View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4135_low_9 (Length: 305)
Name: NF4135_low_9
Description: NF4135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4135_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 14 - 296
Target Start/End: Original strand, 12997709 - 12997990
Alignment:
| Q |
14 |
agacacgcataatccaaaaaatatatgcaatcatatgtgtcggacgccaaacataatctaatagagacacgcataatccaaaaagtatacgtgcttccta |
113 |
Q |
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| T |
12997709 |
agacacgcataatccaaaaagtatatgtaatgatatgtgtcggacgccaaacata-tctaacagagacacgcataatccaaaaagtatatgtgtttccta |
12997807 |
T |
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| Q |
114 |
ataacaaataaaattgaaagatagagatagaagcatcgaatcaaatattgtccaaagtatgtacttactttccccaccaaagttcattttcagtaacctt |
213 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12997808 |
ataacaaataaaattgaaagacagagatagaagcatcgaatcaaatattgtccaaagtatgtacttactttccccaccaaagttcattttcagtaacctt |
12997907 |
T |
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| Q |
214 |
atccttaaccacacgcttgtctctaggagaacgacctgtcttggcaccagaaagtgttgccattgctccattggaagtgatga |
296 |
Q |
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| T |
12997908 |
atccttaaccacacgcttgtctctaggagaacgacctgtcttggcaccagaaagtgttgccattgctccattggaagtgatga |
12997990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 14 - 296
Target Start/End: Original strand, 13072349 - 13072630
Alignment:
| Q |
14 |
agacacgcataatccaaaaaatatatgcaatcatatgtgtcggacgccaaacataatctaatagagacacgcataatccaaaaagtatacgtgcttccta |
113 |
Q |
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|||||||||||||||||||| |||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||| |||||| |
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| T |
13072349 |
agacacgcataatccaaaaagtatatgtaatgatatgtgtcggacgccaaacata-tctaacagagacacgcataatccaaaaagtatatgtgtttccta |
13072447 |
T |
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| Q |
114 |
ataacaaataaaattgaaagatagagatagaagcatcgaatcaaatattgtccaaagtatgtacttactttccccaccaaagttcattttcagtaacctt |
213 |
Q |
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| T |
13072448 |
ataacaaataaaattgaaagacagagatagaagcatcgaatcaaatattgtccaaagtatgtacttactttccccaccaaagttcattttcagtaacctt |
13072547 |
T |
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| Q |
214 |
atccttaaccacacgcttgtctctaggagaacgacctgtcttggcaccagaaagtgttgccattgctccattggaagtgatga |
296 |
Q |
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| T |
13072548 |
atccttaaccacacgcttgtctctaggagaacgacctgtcttggcaccagaaagtgttgccattgctccattggaagtgatga |
13072630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 282
Target Start/End: Original strand, 28139031 - 28139138
Alignment:
| Q |
175 |
tacttactttccccaccaaagttcattttcagtaaccttatccttaaccacacgcttgtctctaggagaacgacctgtcttggcaccagaaagtgttgcc |
274 |
Q |
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| T |
28139031 |
tacttactttccccaccaaagctcattctcagtgagatcatccttgacgacacgcttatctcttggacaccgtccggtcttggcccccgaaagtgtagcc |
28139130 |
T |
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| Q |
275 |
attgctcc |
282 |
Q |
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| T |
28139131 |
aatgctcc |
28139138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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