View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4136_high_15 (Length: 250)
Name: NF4136_high_15
Description: NF4136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4136_high_15 |
 | |
|
| [»] scaffold1243 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 1660704 - 1660946
Alignment:
| Q |
1 |
cacatatcagagcacacaacatgaccaaatcaaagcacttaattaccaaaataaatctttctttcaactaccagtggaccaaaactctagttctagatta |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1660704 |
cacatatcagatcacacaacatgaccaaatcaaagcgcttaattaccaaaacaaatctttcttttaactaccagtggaccaaaactctagttctagatta |
1660803 |
T |
|
| Q |
101 |
ttaaaagatacaaaatatagggcgccaaatatataagacaact-aatcatagcaagaaactttgatatgtaaataaatcaaaattagatctagaaacatc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1660804 |
ttaaaagatacaaaatatagggcgccaaatatataagacaactaaatcatagcaagaaactttgatatgtaaataaatcaaaattagatctagaaacatc |
1660903 |
T |
|
| Q |
200 |
cggtgtgttgacatcaaaataatggaaaccttgtagaattatc |
242 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1660904 |
cagtgtgttgacatcaaaataatggaaaccttgtagaattatc |
1660946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 32226594 - 32226658
Alignment:
| Q |
6 |
atcagagcacacaacatgaccaaatcaaagcacttaattaccaaaataaatctttctttcaacta |
70 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||||| ||||| |
|
|
| T |
32226594 |
atcaaagcacacaacatgaccaaatcaaagcgcttaattagcaaaacaaatctttcttttaacta |
32226658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 36892494 - 36892435
Alignment:
| Q |
1 |
cacatatcagagcacacaacatgaccaaatcaaagcacttaattaccaaaataaatctttc |
61 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||| |||||||| ||||| ||||||||| |
|
|
| T |
36892494 |
cacatatcatagcacacagcatgaccaaatcaaagcgcttaatta-caaaacaaatctttc |
36892435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 1660258 - 1660308
Alignment:
| Q |
20 |
catgaccaaatcaaagcacttaattaccaaaataaatctttctttcaacta |
70 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| |||||||||||| ||||| |
|
|
| T |
1660258 |
catgaccaaatcaaagcgcttaattagcaaaacaaatctttcttttaacta |
1660308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 26449951 - 26449892
Alignment:
| Q |
1 |
cacatatcagagcacacaacatgaccaaatcaaagcacttaattaccaaaataaatctttc |
61 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
26449951 |
cacatatcagagcacacaacatgaccaaatcaaagcacttaatta-caaaacaaatctttc |
26449892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 5564579 - 5564639
Alignment:
| Q |
1 |
cacatatcagagcacacaacatgaccaaatcaaagcacttaattaccaaaataaatctttc |
61 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| || |||||||||||||| ||||||||| |
|
|
| T |
5564579 |
cacatatcagaacacacaacatgaccaaatcaatgcgcttaattaccaaaacaaatctttc |
5564639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 36607264 - 36607207
Alignment:
| Q |
78 |
accaaaactctagttctagattattaaaagatacaaaatatagggcgccaaatatata |
135 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||| |||| ||||||| |
|
|
| T |
36607264 |
accaaaactctagttttagattattaaaagaaacaaaatatagggtgccatatatata |
36607207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 7851515 - 7851455
Alignment:
| Q |
1 |
cacatatcagagcacacaacatgaccaaatcaaagcacttaattaccaaaataaatctttc |
61 |
Q |
| |
|
||||||||||| || | |||||||||||||||| || |||||||||||||| ||||||||| |
|
|
| T |
7851515 |
cacatatcagaacatataacatgaccaaatcaatgcgcttaattaccaaaacaaatctttc |
7851455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1243 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1243
Description:
Target: scaffold1243; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 61 - 125
Alignment:
| Q |
6 |
atcagagcacacaacatgaccaaatcaaagcacttaattaccaaaataaatctttctttcaacta |
70 |
Q |
| |
|
|||| ||||||||||||||| |||||||||| |||||||| ||||| |||||||||||| ||||| |
|
|
| T |
61 |
atcaaagcacacaacatgactaaatcaaagcgcttaattagcaaaacaaatctttcttttaacta |
125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University