View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4136_high_16 (Length: 241)
Name: NF4136_high_16
Description: NF4136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4136_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 34960155 - 34960377
Alignment:
| Q |
1 |
tgttaaaaacttctatctctccgtnnnnnnntaatgtcacaagtgcattctctcatgctcagatacaccgttatttattaaatttgagtccttccagtga |
100 |
Q |
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| T |
34960155 |
tgttaaaaacttctatctatccgtaaaaaaataatgtcacaagtgcattctc--atgctcagatacaccgttatttattaaatttgagtccttccgttga |
34960252 |
T |
|
| Q |
101 |
gtgacttaatgcatatttggtatcacagtaggattgtcaaaatcactgccagacaccgtgattctgtcaaactcaccgtgaatccaaacattttaccatt |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34960253 |
gtgacttaatgcatatttggtatcacggtaggattgtcaaaatcactgtcagacaccgtgattctgtcaaactcaccgtgaatccaaacattttaccatt |
34960352 |
T |
|
| Q |
201 |
ttcccccaagaatgagatatatcat |
225 |
Q |
| |
|
|||||||||||||||| |||||||| |
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| T |
34960353 |
ttcccccaagaatgaggtatatcat |
34960377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 191
Target Start/End: Original strand, 29670656 - 29670686
Alignment:
| Q |
161 |
attctgtcaaactcaccgtgaatccaaacat |
191 |
Q |
| |
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| T |
29670656 |
attctgtcaaactcaccgtgaatccaaacat |
29670686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 1895810 - 1895774
Alignment:
| Q |
157 |
cgtgattctgtcaaactcaccgtgaatccaaacattt |
193 |
Q |
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| T |
1895810 |
cgtgattctgtcaaactcaccgtcaattcaaacattt |
1895774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 191
Target Start/End: Original strand, 7985157 - 7985194
Alignment:
| Q |
154 |
caccgtgattctgtcaaactcaccgtgaatccaaacat |
191 |
Q |
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| T |
7985157 |
caccgtgattctgccaaactcaccgtcaatccaaacat |
7985194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 191
Target Start/End: Original strand, 47443544 - 47443576
Alignment:
| Q |
159 |
tgattctgtcaaactcaccgtgaatccaaacat |
191 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
47443544 |
tgattctgccaaactcaccgtgaatccaaacat |
47443576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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