View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4136_high_6 (Length: 427)
Name: NF4136_high_6
Description: NF4136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4136_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 12924597 - 12924177
Alignment:
| Q |
1 |
cactgtgaattttctcaaaaattttaaacctgatgaaatcctccctttggacaatgctgatcctctgtataagaagcttagggatgagataattgagtat |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12924597 |
cactgtgaattttctcaaaaattttaaaccagatgaaatcctccctttggacaatgctgatcctccgtataagaagcttagggatgagataattgagtat |
12924498 |
T |
|
| Q |
101 |
gttttgcaagatctcaaacgcgatgcactgccaaaggaggaaattcagatgcagtcgcgacctcaagtggtttcgcggaagaagaaaccatttctgtttc |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12924497 |
gttttgcaagatctcagacgcgatgcactgccaaaggaggaaattcagatgcaatcgcaacctcaagtggtttcgcggaagaagaaaccatttctgtttc |
12924398 |
T |
|
| Q |
201 |
tatttgtcatttggttcattgcactattagctattcttttcttcactcctgatgatgattgtagactggtgccaacatgagccatttcactgaggttgat |
300 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12924397 |
tatttgtcattttgttcattgcactattagctattcttttcttcactcctgatgatgattgtagactggtgccaacatgagccatttcactgaggttgat |
12924298 |
T |
|
| Q |
301 |
tttctattcattgatgtgcaagtgatacaatatccattcttagacttgaggtgattttgtttgttcttaatttgtattagtcttttgatggaaggtttat |
400 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12924297 |
tttctattcattgatgtgcaagtgatacaatatccgttcttagacttgaggtgattttgtttgttcttaatttgtattagtcttttgatggaaggtttat |
12924198 |
T |
|
| Q |
401 |
aattgcattcatattcttgga |
421 |
Q |
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|||||||||||||| |||||| |
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| T |
12924197 |
aattgcattcatatacttgga |
12924177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 30791091 - 30791463
Alignment:
| Q |
1 |
cactgtgaattttctcaaaaattttaaacctgatgaaatcctccctttggacaatgctgatcctctgtataagaagcttagggatgagataattgagtat |
100 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| | ||||||||||||||||||||||| |||| ||| |
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| T |
30791091 |
cactgttaattttctcaaaaattttaaacctgatgaaatcctcaatttggactatgctgatcctcgg-ataagaagcttagggatgagatagttgaatat |
30791189 |
T |
|
| Q |
101 |
gttttgcaagatctcaaacgcgatgcactgccaaaggaggaaattcagatgcagtcgcgacctcaagtggtttcgcggaagaagaaaccatttctgtttc |
200 |
Q |
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||||||||||||||||||| | ||||||||||| |||||| |||||||| || |||| |||||||||| ||| | ||||||||||||||| |||||| |
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| T |
30791190 |
gttttgcaagatctcaaacacaatgcactgccagaggagggaattcagacgcgatcgcaacctcaagtgcttttggataagaagaaaccatttttgtttc |
30791289 |
T |
|
| Q |
201 |
tatttgtcatttggttcattgcactattagctattcttttcttcactcctgatgatgattgtagactggtgccaacatgagccatttcactgaggttgat |
300 |
Q |
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| ||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
30791290 |
--tgtgtcatttggttcattgcagcatta--tatgcttttcttcactcctgatgatgattgtagacttgtgccaacatg--------------------t |
30791365 |
T |
|
| Q |
301 |
tttctattcattgatgtgcaagtgatacaatatccattcttagacttgaggtgattttgtttgttcttaatttgtattagtcttttgatggaaggttt |
398 |
Q |
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||| || ||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
30791366 |
tttttactcattgatgtgcaagtgatacaatatctgttcttagacttcaggtgatttggtttgttctcaatttgtattagtcttttgatggaaggttt |
30791463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 34 - 367
Target Start/End: Complemental strand, 22382716 - 22382395
Alignment:
| Q |
34 |
tgaaatcctccctttggacaatgctgatcctctgtataagaagcttagggatgagataattgagtatgttttgcaagatctcaaacgcgatgcactgcca |
133 |
Q |
| |
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||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||| | ||||||| |||||||||||| |||| |||||| |
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| T |
22382716 |
tgaaatcctgactttggacaatgctgatcctcggtataagaagcttagggatgagatggttgaggacattttgcacgatctcaaacgcaatgctctgcca |
22382617 |
T |
|
| Q |
134 |
aaggaggaaattcagatgcagtcgcgacctcaa------gtggtttcgcggaagaagaaaccatttctgtttctatttgtcatttggttcattgcactat |
227 |
Q |
| |
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||||||| |||||||| || | | ||||||| ||| ||| | ||||||| ||| ||||| ||||||| | || |||| |||||||||| ||| |
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| T |
22382616 |
aaggagggaattcagacgcgattacaacctcaagtgcttgtgcttttggggaagaaaaaagcatttttgtttctctgtgcaattttgttcattgcagtat |
22382517 |
T |
|
| Q |
228 |
tagctattcttttcttcactcctgatgatgattgtagactggtgccaacatgagccatttcactgaggttgattttctattcattgatgtgcaagtgata |
327 |
Q |
| |
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||||||| ||||||| |||| | |||||||||||| | || |||||||||| || ||||||| ||||||||||||||||||| |
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| T |
22382516 |
tagctatgcttttctacacttccgatgatgattgtcgcctagtgccaacataag------------------gtttctatacattgatgtgcaagtgata |
22382435 |
T |
|
| Q |
328 |
caatatccattcttagacttgaggtgattttgtttgttct |
367 |
Q |
| |
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||||||| ||||||||||||||||||||| ||||||||| |
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|
| T |
22382434 |
caatatctgttcttagacttgaggtgatttggtttgttct |
22382395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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