View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4136_low_1 (Length: 583)
Name: NF4136_low_1
Description: NF4136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4136_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 16 - 568
Target Start/End: Complemental strand, 20842228 - 20841676
Alignment:
| Q |
16 |
ttttcaagtagctagtgatggttggaagagttatggtaatagtagtagtaattataataataataggagtttgtatggtttgtgttgtggtggagagagt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20842228 |
ttttcaagtagctagtgatggttggaagagttatggtaatagtagtagtaattttaataataataggagtttgtatggtttgtgttgtggtggtgagagt |
20842129 |
T |
|
| Q |
116 |
ttggttaagtttatggtgaatctaccaaatgggagtagtgtttttgaaaaggcggtgtttaccggcggaggagttgtgaattcgaagtatgctgaggagg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20842128 |
ttggttaagtttatggtgaatctaccaaatgggagtagtgtttttgaaaaggcggtgtttaccggcggaggagttgtgaattcgaagtatgctgaggagg |
20842029 |
T |
|
| Q |
216 |
ttttgtgggagactgtgactggtgttagtggtagggttgttcaaagatgtgtaggaattgttgctgataagtttaaggctaaggcattgaggaatttgga |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20842028 |
ttttgtgggagactgtgactggtgttagtggtagtgttgttcaaagatgtgtaggaattgttgctgataagtttaaggctaaggcattgaggaatttgga |
20841929 |
T |
|
| Q |
316 |
gaatcaaaaccattggatggtaaatacttcttgtcagcttcaagggtttgttagtttaatcaaggattttaacaacgagctcgaacttttcggtattgtt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20841928 |
gaatcaaaaccattggatggtaaatacttcttgtcagcttcaagggtttgttagtttaatcaaggattttaacaacgagctcgaacttttcggtattgtt |
20841829 |
T |
|
| Q |
416 |
actaagaattgtcttaaagttgcaaattttatagacaatgaatctcaggtgaggaatgtttttgttaattatagaatgcaggagatggagtatggcgggt |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20841828 |
actaagaattgtcttaaagttgcaaattttatagacaatgaatctcaggtgaggaatgtttttgttaattatagaatgcaggagatggagtatggcgggt |
20841729 |
T |
|
| Q |
516 |
tgattcgtgtgccatcgccgaaatgtgaccctttgaagaactttgcgtctgtg |
568 |
Q |
| |
|
||||||||||||| |||||||||||||| || |||||||||||||| |||||| |
|
|
| T |
20841728 |
tgattcgtgtgccttcgccgaaatgtgatccgttgaagaactttgcatctgtg |
20841676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 275 - 386
Target Start/End: Original strand, 42254851 - 42254962
Alignment:
| Q |
275 |
gttgctgataagtttaaggctaaggcattgaggaatttggagaatcaaaaccattggatggtaaatacttcttgtcagcttcaagggtttgttagtttaa |
374 |
Q |
| |
|
|||||||| ||||| || ||||||||||||| || |||||||||| || ||||||||||| ||| ||||||||| |||||| ||| |||||||| |
|
|
| T |
42254851 |
gttgctgacaagttcaaatctaaggcattgagaaacttggagaatcggaatcattggatggtgaatctctcttgtcagtatcaaggttttaatagtttaa |
42254950 |
T |
|
| Q |
375 |
tcaaggatttta |
386 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
42254951 |
tcaaagatttta |
42254962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University