View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4136_low_11 (Length: 349)
Name: NF4136_low_11
Description: NF4136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4136_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 38 - 338
Target Start/End: Original strand, 35865422 - 35865721
Alignment:
| Q |
38 |
cttttaacttttgaaataatatcaatctcataagaaccaacattaatggaacaatatattcannnnnnnaccaaaacaaaactattacattttcaaatca |
137 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
35865422 |
cttttaacttttgaaataatatcaatctcataagaaccaacattaatggaacaatatattaatttttttaccaaaacaaaactattacattttcaaatca |
35865521 |
T |
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| Q |
138 |
accaaatgagcaatacaatggaacataatcaaggataaatgaagcaacattagtcacaatcgtccttgtcaacaagaaccacgatattttcatgtcccta |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35865522 |
accaaatgagcaatacaatggaacataatcaaggataaatgaagcaacattagtcacaatcgtccttgtcaacaagaaccacgatattttcatgtcccta |
35865621 |
T |
|
| Q |
238 |
cagttgaaagattatgaagnnnnnnnngccacaaactctctctgcaccaatgcaagataataccaaattcagaatagtcaacatgacaatgattgatgat |
337 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35865622 |
cagttgaaagattatgaag-aaaaaaagccacaaactctctctgcaccaatgcaagataacaccaaattcagaatagtcaacatgacaatgattgatgat |
35865720 |
T |
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