View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4136_low_12 (Length: 337)

Name: NF4136_low_12
Description: NF4136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4136_low_12
NF4136_low_12
[»] chr8 (4 HSPs)
chr8 (13-319)||(42209283-42209591)
chr8 (127-178)||(40696213-40696264)
chr8 (124-178)||(20271028-20271084)
chr8 (124-178)||(21057656-21057712)
[»] chr1 (2 HSPs)
chr1 (124-178)||(2542765-2542819)
chr1 (124-170)||(34437620-34437666)
[»] chr4 (9 HSPs)
chr4 (121-182)||(993236-993297)
chr4 (124-178)||(16457942-16457996)
chr4 (127-171)||(19382322-19382366)
chr4 (124-171)||(2247649-2247696)
chr4 (128-171)||(21433943-21433986)
chr4 (124-171)||(33414025-33414072)
chr4 (127-178)||(45654074-45654125)
chr4 (125-178)||(3688593-3688646)
chr4 (122-171)||(53127982-53128031)
[»] chr2 (3 HSPs)
chr2 (121-178)||(42094266-42094322)
chr2 (124-159)||(33171681-33171716)
chr2 (124-182)||(3466446-3466504)
[»] chr5 (2 HSPs)
chr5 (124-168)||(35244862-35244906)
chr5 (127-178)||(3907717-3907768)
[»] chr7 (6 HSPs)
chr7 (125-176)||(24516579-24516630)
chr7 (121-178)||(40134449-40134506)
chr7 (124-184)||(26862970-26863030)
chr7 (124-178)||(12275801-12275855)
chr7 (124-196)||(29356939-29357011)
chr7 (125-177)||(47497764-47497816)
[»] chr3 (6 HSPs)
chr3 (124-178)||(36480770-36480824)
chr3 (124-168)||(3901521-3901565)
chr3 (124-168)||(3901566-3901610)
chr3 (124-178)||(11532498-11532552)
chr3 (127-171)||(29955063-29955107)
chr3 (127-171)||(30004217-30004261)
[»] chr6 (3 HSPs)
chr6 (125-182)||(1473638-1473695)
chr6 (125-178)||(6643378-6643431)
chr6 (129-178)||(11650916-11650965)


Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 319
Target Start/End: Complemental strand, 42209591 - 42209283
Alignment:
Q  13 tcatcaggcaaatattaattctttcttagaggattgattgagannnnnnnaaaagtattaaacaaaaagttaagacctattaagtgactttctagaatgg 112  Q
    |||| ||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42209591 tcataaggcaaatattaattctttcttagaggattgattgagatttttttaaaagtattaaacaaaaagttaagacctattaagtgactttctagaatgg 42209492  T
Q  113 tgctagcaacac--tctttgattggttaaatttcacatggttcccaccatatcatgtgggttccatatgaatattgaccaatcaaattgtgtttgaaaat 210  Q
    ||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42209491 tgctagcaacacactctttgattggttaaaattcacatggttcccaccatatcatgtgggttccatatgaatattgaccaatcaaattgtgttggaaaat 42209392  T
Q  211 gtgttgctagcattattctactttctatttcttaannnnnnnaacaagtggccaagagtacaattagtcggattgtaatgataatagtggcagctagaat 310  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42209391 gtgttgctagcattattctactttctatttcttaatttttttaacaagtggccaagagtacaattagtcggattgtaatgataatagtggcagctagaat 42209292  T
Q  311 gcagaatgt 319  Q
    |||||||||    
T  42209291 gcagaatgt 42209283  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 178
Target Start/End: Original strand, 40696213 - 40696264
Alignment:
Q  127 tttgattggttaaatttcacatggttcccaccatatcatgtgggttccatat 178  Q
    ||||||| |||||| ||||||||| |||||||| ||||||||||||| ||||    
T  40696213 tttgattagttaaaattcacatgggtcccaccaaatcatgtgggttctatat 40696264  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 178
Target Start/End: Original strand, 20271028 - 20271084
Alignment:
Q  124 ctctttgattggttaaat--ttcacatggttcccaccatatcatgtgggttccatat 178  Q
    |||||||||||||||||   ||||||||| |||||||| ||||||||||| ||||||    
T  20271028 ctctttgattggttaaaaaattcacatggatcccaccaaatcatgtgggtcccatat 20271084  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 178
Target Start/End: Original strand, 21057656 - 21057712
Alignment:
Q  124 ctctttgattggttaaat--ttcacatggttcccaccatatcatgtgggttccatat 178  Q
    |||||||||||||||||   ||||||||| |||||||| ||||||||||| ||||||    
T  21057656 ctctttgattggttaaaaaattcacatggatcccaccaaatcatgtgggtcccatat 21057712  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 124 - 178
Target Start/End: Complemental strand, 2542819 - 2542765
Alignment:
Q  124 ctctttgattggttaaatttcacatggttcccaccatatcatgtgggttccatat 178  Q
    ||||||||||||||||| ||||||||| | |||||| ||||||||||||||||||    
T  2542819 ctctttgattggttaaaattcacatggcttccaccaaatcatgtgggttccatat 2542765  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 170
Target Start/End: Original strand, 34437620 - 34437666
Alignment:
Q  124 ctctttgattggttaaatttcacatggttcccaccatatcatgtggg 170  Q
    ||||||||||||||||| ||||||||| |||||||| ||||||||||    
T  34437620 ctctttgattggttaaaattcacatgggtcccaccaaatcatgtggg 34437666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 182
Target Start/End: Original strand, 993236 - 993297
Alignment:
Q  121 acactctttgattggttaaatttcacatggttcccaccatatcatgtgggttccatatgaat 182  Q
    |||||||||||||||||||| ||||||||  |||||||| ||||||||||| |||| |||||    
T  993236 acactctttgattggttaaaattcacatgagtcccaccaaatcatgtgggtcccatgtgaat 993297  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 178
Target Start/End: Original strand, 16457942 - 16457996
Alignment:
Q  124 ctctttgattggttaaatttcacatggttcccaccatatcatgtgggttccatat 178  Q
    ||||||||||||||||| ||||||||| ||||| || ||||||||||| ||||||    
T  16457942 ctctttgattggttaaaattcacatggatcccatcaaatcatgtgggtcccatat 16457996  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 19382322 - 19382366
Alignment:
Q  127 tttgattggttaaatttcacatggttcccaccatatcatgtgggt 171  Q
    |||||||||||||| ||||||||| |||||||| |||||||||||    
T  19382322 tttgattggttaaaattcacatggatcccaccaaatcatgtgggt 19382366  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 171
Target Start/End: Complemental strand, 2247696 - 2247649
Alignment:
Q  124 ctctttgattggttaaatttcacatggttcccaccatatcatgtgggt 171  Q
    ||||||||||||||||| || |||||| |||||||| |||||||||||    
T  2247696 ctctttgattggttaaaattaacatggatcccaccaaatcatgtgggt 2247649  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 171
Target Start/End: Complemental strand, 21433986 - 21433943
Alignment:
Q  128 ttgattggttaaatttcacatggttcccaccatatcatgtgggt 171  Q
    ||||||||||||| ||||||||| |||||||| |||||||||||    
T  21433986 ttgattggttaaaattcacatggatcccaccaaatcatgtgggt 21433943  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 171
Target Start/End: Original strand, 33414025 - 33414072
Alignment:
Q  124 ctctttgattggttaaatttcacatggttcccaccatatcatgtgggt 171  Q
    ||||||||||||||||| ||||||||| |||||||| |||| ||||||    
T  33414025 ctctttgattggttaaaattcacatggatcccaccaaatcacgtgggt 33414072  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 178
Target Start/End: Complemental strand, 45654125 - 45654074
Alignment:
Q  127 tttgattggttaaatttcacatggttcccaccatatcatgtgggttccatat 178  Q
    |||||||||||||| ||||||||| ||||| || ||||||||||| ||||||    
T  45654125 tttgattggttaaaattcacatggatcccatcaaatcatgtgggtcccatat 45654074  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 3688593 - 3688646
Alignment:
Q  125 tctttgattggttaaatttcacatggttcccaccatatcatgtgggttccatat 178  Q
    ||||||||| |||||| ||||||||| || ||||| ||||||||||| ||||||    
T  3688593 tctttgattagttaaaattcacatgggtctcaccaaatcatgtgggtcccatat 3688646  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 53127982 - 53128031
Alignment:
Q  122 cactctttgattggttaaatttcacatggttcccaccatatcatgtgggt 171  Q
    |||| ||||||||||||||  |||||||| ||||||||||||| ||||||    
T  53127982 cactatttgattggttaaaactcacatgggtcccaccatatcaagtgggt 53128031  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 178
Target Start/End: Complemental strand, 42094322 - 42094266
Alignment:
Q  121 acactctttgattggttaaatttcacatggttcccaccatatcatgtgggttccatat 178  Q
    |||||||||||||||||||| ||||||||| |||||||| ||||||||||| ||||||    
T  42094322 acactctttgattggttaaaattcacatgg-tcccaccaaatcatgtgggtcccatat 42094266  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 159
Target Start/End: Complemental strand, 33171716 - 33171681
Alignment:
Q  124 ctctttgattggttaaatttcacatggttcccacca 159  Q
    ||||||||||||||||||||||||||| ||||||||    
T  33171716 ctctttgattggttaaatttcacatgggtcccacca 33171681  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 3466504 - 3466446
Alignment:
Q  124 ctctttgattggttaaatttcacatggttcccaccatatcatgtgggttccatatgaat 182  Q
    ||||||||||||||||| ||||||||| | |||| | ||| ||||||| ||||||||||    
T  3466504 ctctttgattggttaaaattcacatgggttccactaaatcgtgtgggtcccatatgaat 3466446  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 35244862 - 35244906
Alignment:
Q  124 ctctttgattggttaaatttcacatggttcccaccatatcatgtg 168  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||    
T  35244862 ctctttgattggttaaaattcacatggatcccaccatatcatgtg 35244906  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 178
Target Start/End: Complemental strand, 3907768 - 3907717
Alignment:
Q  127 tttgattggttaaatttcacatggttcccaccatatcatgtgggttccatat 178  Q
    |||||||||||||| ||||||||| |||||||| ||||||||||| ||||||    
T  3907768 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggtcccatat 3907717  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 176
Target Start/End: Original strand, 24516579 - 24516630
Alignment:
Q  125 tctttgattggttaaatttcacatggttcccaccatatcatgtgggttccat 176  Q
    |||||||||||||||| ||||||||| |||||||| ||||||||| ||||||    
T  24516579 tctttgattggttaaaattcacatgggtcccaccaaatcatgtggattccat 24516630  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 178
Target Start/End: Complemental strand, 40134506 - 40134449
Alignment:
Q  121 acactctttgattggttaaatttcacatggttcccaccatatcatgtgggttccatat 178  Q
    ||||||| |||||||||||| ||||||||| |||||||| || |||||||| ||||||    
T  40134506 acactctctgattggttaaaattcacatgggtcccaccaaattatgtgggtcccatat 40134449  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 26863030 - 26862970
Alignment:
Q  124 ctctttgattggttaaatttcacatggttcccaccatatcatgtgggttccatatgaatat 184  Q
    |||||| |||||||||| ||||||||| |||||||| ||||||||||| | |||| |||||    
T  26863030 ctctttaattggttaaaattcacatgggtcccaccaaatcatgtgggtcctatataaatat 26862970  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 178
Target Start/End: Complemental strand, 12275855 - 12275801
Alignment:
Q  124 ctctttgattggttaaatttcacatggttcccaccatatcatgtgggttccatat 178  Q
    ||||| ||||||||||| |||| |||| |||||||| ||||||||||| ||||||    
T  12275855 ctcttcgattggttaaaattcatatgggtcccaccaaatcatgtgggtcccatat 12275801  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 29356939 - 29357011
Alignment:
Q  124 ctctttgattggttaaatttcacatggttcccaccatatcatgtgggttccatatgaatattgaccaatcaaa 196  Q
    ||||||||||||||||| ||||||||| | ||||||  ||| |||| | |||||||||| || || |||||||    
T  29356939 ctctttgattggttaaaattcacatgggttccaccaattcacgtggatcccatatgaattttaacaaatcaaa 29357011  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 47497816 - 47497764
Alignment:
Q  125 tctttgattggttaaatttcacatggttcccaccatatcatgtgggttccata 177  Q
    |||||||||||||||| ||||||||  |||||||| || |||||||| |||||    
T  47497816 tctttgattggttaaaattcacatgagtcccaccaaattatgtgggtcccata 47497764  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 178
Target Start/End: Complemental strand, 36480824 - 36480770
Alignment:
Q  124 ctctttgattggttaaatttcacatggttcccaccatatcatgtgggttccatat 178  Q
    |||||||||||| |||| ||||||||| |||||||| ||||||||||| ||||||    
T  36480824 ctctttgattggctaaaattcacatgggtcccaccaaatcatgtgggtcccatat 36480770  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 3901521 - 3901565
Alignment:
Q  124 ctctttgattggttaaatttcacatggttcccaccatatcatgtg 168  Q
    ||||||||||||||||| ||||||||| |||||||| ||||||||    
T  3901521 ctctttgattggttaaaattcacatgggtcccaccaaatcatgtg 3901565  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 3901610 - 3901566
Alignment:
Q  124 ctctttgattggttaaatttcacatggttcccaccatatcatgtg 168  Q
    ||||||||||||||||| ||||||||| |||||||| ||||||||    
T  3901610 ctctttgattggttaaaattcacatgggtcccaccaaatcatgtg 3901566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 178
Target Start/End: Complemental strand, 11532552 - 11532498
Alignment:
Q  124 ctctttgattggttaaatttcacatggttcccaccatatcatgtgggttccatat 178  Q
    ||||||||||||||||| ||||||||| | |||||| ||||||||| | ||||||    
T  11532552 ctctttgattggttaaaattcacatgggttccaccaaatcatgtggatcccatat 11532498  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 29955063 - 29955107
Alignment:
Q  127 tttgattggttaaatttcacatggttcccaccatatcatgtgggt 171  Q
    |||||||||||||| ||||||||| ||||| || |||||||||||    
T  29955063 tttgattggttaaaattcacatgggtcccatcaaatcatgtgggt 29955107  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 30004217 - 30004261
Alignment:
Q  127 tttgattggttaaatttcacatggttcccaccatatcatgtgggt 171  Q
    |||||||||||||| ||||||||| ||||| || |||||||||||    
T  30004217 tttgattggttaaaattcacatgggtcccatcaaatcatgtgggt 30004261  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 1473638 - 1473695
Alignment:
Q  125 tctttgattggttaaatttcacatggttcccaccatatcatgtgggttccatatgaat 182  Q
    |||||||||||||||| ||||||||| | |||||| ||||||||||| |||| |||||    
T  1473638 tctttgattggttaaaattcacatgggttccaccaaatcatgtgggtcccatgtgaat 1473695  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 6643431 - 6643378
Alignment:
Q  125 tctttgattggttaaatttcacatggttcccaccatatcatgtgggttccatat 178  Q
    |||||||||||||||| |||| || | |||||||| ||||||||||| ||||||    
T  6643431 tctttgattggttaaaattcatataggtcccaccaaatcatgtgggtcccatat 6643378  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 11650916 - 11650965
Alignment:
Q  129 tgattggttaaatttcacatggttcccaccatatcatgtgggttccatat 178  Q
    |||||||||||| ||||||||| |||||||| || |||||||| ||||||    
T  11650916 tgattggttaaaattcacatggatcccaccaaattatgtgggtcccatat 11650965  T

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