View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4136_low_15 (Length: 252)
Name: NF4136_low_15
Description: NF4136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4136_low_15 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 34959822 - 34960062
Alignment:
| Q |
11 |
cacagacgtagatgtgttgacagataaatattcattaagttcctgcaacaagtttgcatgatatatatcaatatggtacatgaaaaccaatcatatgcnn |
110 |
Q |
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| T |
34959822 |
cacagacgtagatgtgtggacagataaatattcattaagttcctgcaacaagtttgcatgatatatatcaatatgatacttgaaaaccaatcatatgcaa |
34959921 |
T |
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| Q |
111 |
nnnnnnnttgataaaactaaattgaggcataaagagtttatatcaatccatggcacatgtatgcatatttaatgttaaattgtcgaagtgtcacgatcat |
210 |
Q |
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| T |
34959922 |
aaaaaa-ttgataaaactaaattgaggcataaagagtttatatcaatccatggcacatgtatgcatatttaatgttaaattgtcgaagtgtcacgatcat |
34960020 |
T |
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| Q |
211 |
aaaacagaatttgtaaaactactaaccattccaaataaaaac |
252 |
Q |
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| T |
34960021 |
aaaacagaatttgtaaaactactaaccattccaaataaaaac |
34960062 |
T |
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