View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4136_low_18 (Length: 240)
Name: NF4136_low_18
Description: NF4136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4136_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 1660479 - 1660671
Alignment:
| Q |
19 |
ggaatctctctcatactcactttcactgcagtcaaacaacaccataaaacaataaaatttgatatcatataatttcacaatgtcaaaatcaaag-aaaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1660479 |
ggaatctctctcatactcactttcactgcagtcaaacaacaccataaagcaataaaatttgatatcatataatttcacaatgtcaaaatcaaagaaaaat |
1660578 |
T |
|
| Q |
118 |
aaactatttagttgttcttaaattcacagagaatgatttgatcccatatgataagcacaacaatgcaatgaaaggcgtagaaacaataatgaa |
210 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
1660579 |
aaactatttagttgttctcaaattcacagagaatgatttgatcccatatgataagcacaacaatgcaatgaaaggcatagaaacaatcatgaa |
1660671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 19 - 176
Target Start/End: Original strand, 55821220 - 55821377
Alignment:
| Q |
19 |
ggaatctctctcatactcactttcactgcagtcaaacaacaccataaaacaataaaatttgatatcatataatttcacaa-tgtcaaaatcaaag-aaaa |
116 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||| |||||| |||||||||| |||||||||||||| |||| |
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| T |
55821220 |
ggaatctctctcattctcactttcactgcagtcaaacaacaccataaagcaatcaaatttgacatcatacaatttcacaattgtcaaaatcaaagaaaaa |
55821319 |
T |
|
| Q |
117 |
taaactatttagttgttcttaaattcacagagaatgatttgatcccatatgataagcaca |
176 |
Q |
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||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
55821320 |
taaactatttagttgttctcaaatt--cagagaatgatttgatcccatatgataagcaca |
55821377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 176
Target Start/End: Original strand, 46230957 - 46231111
Alignment:
| Q |
23 |
tctctctcatactcactttcactgcagtcaaacaacaccataaaacaataaaatttgatatcatataatttcacaatgtcaaaatcaaag-aaaataaac |
121 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||| |||||||||||||||| |||| |||||| || |
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| T |
46230957 |
tctctctcatactcactttcactgcaggtaaacaacaccataaagcaatcaaatttgatatcatataaattcacaatgtcaaaatgaaagaaaaatatac |
46231056 |
T |
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| Q |
122 |
tatttagttgttcttaaattcacagagaatgatttgatcccatatgataagcaca |
176 |
Q |
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|||||| || | | |||||||| |||||||| |||| |||||||||||||||| |
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|
| T |
46231057 |
tatttactttctttcgaattcacaaagaatgatctgataccatatgataagcaca |
46231111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 32226829 - 32226895
Alignment:
| Q |
19 |
ggaatctctctcatactcactttcactgcagtcaaacaacaccataaaacaataaaatttgatatca |
85 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32226829 |
ggaatctctctcatactcactttcactgcagtcaaacaacaccataaagcaataaaatttgatatca |
32226895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 202
Target Start/End: Original strand, 1660227 - 1660255
Alignment:
| Q |
174 |
acaacaatgcaatgaaaggcgtagaaaca |
202 |
Q |
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||||||||||||||||||||||||||||| |
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|
| T |
1660227 |
acaacaatgcaatgaaaggcgtagaaaca |
1660255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 19 - 176
Target Start/End: Original strand, 19001172 - 19001329
Alignment:
| Q |
19 |
ggaatctctctcatactcactttcactgcagtcaaacaacaccataaaacaataaaatttgatatcatataatttcacaa-tgtcaaaatcaaag-aaaa |
116 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||| |||||||||| |||||||||||||| |||| |
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| T |
19001172 |
ggaatctctctcatactcactttcagtgcagtcaaacaacaccataaagcaatcaaatttgatatcatacaatttcacaattgtcaaaatcaaagaaaaa |
19001271 |
T |
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| Q |
117 |
taaactatttagttgttcttaaattcacagagaatgatttgatcccatatgataagcaca |
176 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| |
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|
| T |
19001272 |
taaactatttagttgttctcaaatt--cagagaatgattttatcccatatgataagcaca |
19001329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 176
Target Start/End: Complemental strand, 14702247 - 14702093
Alignment:
| Q |
23 |
tctctctcatactcactttcactgcagtcaaacaacaccataaaacaataaaatttgatatcatataatttcacaatgtcaaaatcaaag-aaaataaac |
121 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||| |||||||||||||||| |||| |||||| || |
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| T |
14702247 |
tctctctcatactcactttcactgcaggtaaacaacaccataaagcaatcaaatttgatatcatataaattcacaatgtcaaaatgaaagaaaaatatac |
14702148 |
T |
|
| Q |
122 |
tatttagttgttcttaaattcacagagaatgatttgatcccatatgataagcaca |
176 |
Q |
| |
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|||||| || | | |||||||| |||||||| |||| |||||||||||||||| |
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| T |
14702147 |
tatttactttctttcgaattcacaaagaatgatctgataccatatgataagcaca |
14702093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 86 - 176
Target Start/End: Original strand, 35241459 - 35241550
Alignment:
| Q |
86 |
tataatttcacaatgtcaaaatcaaagaaaa-taaactatttagttgttcttaaattcacagagaatgatttgatcccatatgataagcaca |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||| |||| |||||||| |||| ||||| |||||||||| |
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| T |
35241459 |
tataatttcacaatgtcaaaatcaaagaaaaataaactatttagttgctctcaaatgcacacagaatgatatgataccatacgataagcaca |
35241550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 26957302 - 26957206
Alignment:
| Q |
27 |
tctcatactcactttcactgcagtcaaacaacaccataaaacaataaaatttgatatcatataatttcacaatgtc-aaaatcaaag-aaaataaactat |
124 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||| |||||| || |||||||||||||||| |||||||||| ||||| |||||| |
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| T |
26957302 |
tctcataatcactttcactggagtcaaacaacaccataaagcaataa----------caaataatttcacaatgtcaaaaatcaaagaaaaattaactat |
26957213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 40948573 - 40948477
Alignment:
| Q |
27 |
tctcatactcactttcactgcagtcaaacaacaccataaaacaataaaatttgatatcatataatttcacaatgtc-aaaatcaaag-aaaataaactat |
124 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||| |||||| || |||||||||||||||| |||||||||| ||||| |||||| |
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|
| T |
40948573 |
tctcataatcactttcactggagtcaaacaacaccataaagcaataa----------caaataatttcacaatgtcaaaaatcaaagaaaaattaactat |
40948484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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