View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4136_low_19 (Length: 238)
Name: NF4136_low_19
Description: NF4136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4136_low_19 |
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| [»] chr2 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 12924850 - 12924631
Alignment:
| Q |
19 |
caagcacttggaattattaggcatttcgtaacatttgaatttccagatataattaagtgattaagtttaacagttgaggtttcaacagattgaaattatt |
118 |
Q |
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| T |
12924850 |
caagcacttggaattattaggcatttcctaccatttgaatttccagatataattaagtgattaagtttaacagttgaggtttcaacagattggaattatt |
12924751 |
T |
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| Q |
119 |
gttaatctctctgtttcagactttcttgttggaagaaccttcttctgtcactttgcttcagcctgaaaagaaaaccgacacaggggagaatagctccagc |
218 |
Q |
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| T |
12924750 |
gttaatctctctgtttcagactttcttgttggaagaaccttcttctgtcactttgcttcagcctgaaaagaaaaccgacacaggggagaatagttccagc |
12924651 |
T |
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| Q |
219 |
aattgctttgatgtgtgtga |
238 |
Q |
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| T |
12924650 |
aattgctttgatgtgtgtga |
12924631 |
T |
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Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 22382861 - 22382753
Alignment:
| Q |
130 |
tgtttcagactttcttgttggaagaaccttcttctgtcactttgcttcagcctgaaaagaaaaccgacacaggggagaatagctccagcaattgctttga |
229 |
Q |
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| T |
22382861 |
tgtttcagactttcgtgttggaagaaccttcttctgtaacttcgcttcagcctgaaaagaaaaccgagacaaggaaaaatagttccagtaattgctttga |
22382762 |
T |
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| Q |
230 |
tgtgtgtga |
238 |
Q |
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| T |
22382761 |
tgtgtgtga |
22382753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 22382942 - 22382897
Alignment:
| Q |
18 |
ccaagcacttggaattattaggcatttcgtaacatttgaatttcca |
63 |
Q |
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| T |
22382942 |
ccaagcacttggaattattaggcattttgtaccgtttgaatttcca |
22382897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 130 - 238
Target Start/End: Original strand, 30790949 - 30791057
Alignment:
| Q |
130 |
tgtttcagactttcttgttggaagaaccttcttctgtcactttgcttcagcctgaaaagaaaaccgacacaggggagaatagctccagcaattgctttga |
229 |
Q |
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| T |
30790949 |
tgtttcagactatcttgttggaagaaccttcttctataactttgcttcagccggaaaagaaaacagacacatgggaaaatagttcgagtaattgctttga |
30791048 |
T |
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| Q |
230 |
tgtgtgtga |
238 |
Q |
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| T |
30791049 |
tgcgtgtga |
30791057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 30790156 - 30790213
Alignment:
| Q |
18 |
ccaagcacttggaattattaggcatttcgtaacatttgaatttccagatataattaag |
75 |
Q |
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| T |
30790156 |
ccaagcacttggaattattaggcatttcgtgcgatttgaatttccagaaataattaag |
30790213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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