View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4136_low_2 (Length: 574)

Name: NF4136_low_2
Description: NF4136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4136_low_2
NF4136_low_2
[»] chr2 (13 HSPs)
chr2 (19-558)||(39131451-39131989)
chr2 (102-280)||(39492692-39492870)
chr2 (56-253)||(39469293-39469490)
chr2 (280-541)||(39125827-39126074)
chr2 (56-279)||(39125492-39125728)
chr2 (280-541)||(39470541-39470801)
chr2 (67-244)||(39424947-39425124)
chr2 (70-233)||(39145370-39145532)
chr2 (129-191)||(39395954-39396016)
chr2 (129-210)||(39180008-39180089)
chr2 (129-191)||(39386040-39386102)
chr2 (129-169)||(39225015-39225055)
chr2 (129-169)||(39372498-39372538)
[»] chr5 (1 HSPs)
chr5 (124-245)||(38599532-38599661)
[»] chr3 (1 HSPs)
chr3 (69-169)||(51577114-51577213)
[»] chr6 (1 HSPs)
chr6 (118-190)||(16115538-16115610)


Alignment Details
Target: chr2 (Bit Score: 499; Significance: 0; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 19 - 558
Target Start/End: Original strand, 39131451 - 39131989
Alignment:
Q  19 aactaactccattgaaattaaggttcattannnnnnncttattcaatttttattttatgaaacattccaattttcataacccttcatgatagttataaat 118  Q
    ||||||||||||||||||||||||||||||       ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  39131451 aactaactccattgaaattaaggttcattatttttttcttattcaatttttattttatgaaaaattccaattttcataacccttcatgatagttataaat 39131550  T
Q  119 actttgaatgtgaactcaggacaaggccagagatcaagaagttgcttgtctcctagctgttctacaatgcattatagataacaacctagaattcaaggat 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39131551 actttgaatgtgaactcaggacaaggccagagatcaagaagttgcttgtctcatagctgttctacaatgcattatagataacaacctagaattcaaggat 39131650  T
Q  219 ctacttaacaagattgacaatcgtattcttgagctacagagaggcaaatagtgtttttactgaaagaatgaaaactcatgagcaattaacagggtcatct 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39131651 ctacttaacaagattgacaatcgtattcttgagctacagagaggcaaatagtgtttttactgaaagaatgaaaactcatgagcaattaacagggtcatct 39131750  T
Q  319 ctatctttgggtcactattctttctttcctttctattgtatattgttcatttttaatttctcaaaggcttaaatttgatatgcagaaacgttttcatatg 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39131751 ctatctttgggtcactattctttctttcctttctattgtatattgttcatttttaatttctcaaaggcttaaatttgatatgcagaaacgttttcatatg 39131850  T
Q  419 caaactagttttttagagttcattgccacagttttgttcgcaaagtttatgtaattagcttcatacgcttgatgcagaagttctccaagagttatctctc 518  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39131851 caaactagttttttagagtacattgccacagttttgttcgcaaagtttatgtaattagcttcatacgcttgatgcagaagttctccaagagttatctctc 39131950  T
Q  519 atttgttcggagaaaattgaaatttttggctaatacttgg 558  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  39131951 atttgttcggagaaaattgaaa-ttttggctaatacttgg 39131989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 102 - 280
Target Start/End: Complemental strand, 39492870 - 39492692
Alignment:
Q  102 tcatgatagttataaatactttgaatgtgaactcaggacaaggccagagatcaagaagttgcttgtctcctagctgttctacaatgcattatagataaca 201  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||  |||||||||||| ||||||||||||||||    
T  39492870 tcatgatagttataaataatttgaatatgaactcaggacaaggccagagatcaagaagttgctagtctcaaagctgttctacagtgcattatagataaca 39492771  T
Q  202 acctagaattcaaggatctacttaacaagattgacaatcgtattcttgagctacagagaggcaaatagtgtttttactg 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  39492770 acctagaattcaaggatctacttaacaagattgacaatcgtattcttgagctacagagaggcaaagagtgtttttactg 39492692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 56 - 253
Target Start/End: Original strand, 39469293 - 39469490
Alignment:
Q  56 cttattcaatttttattttatgaaacattccaattttcataacccttcatgatagttataaatactttgaatgtgaactcaggacaaggccagagatcaa 155  Q
    |||||||||||| |||||||||||||||| |||| ||||||  ||||||| |||||||||| |||||||||||||||||||||| ||||| | |||||||    
T  39469293 cttattcaatttctattttatgaaacatttcaatcttcatactccttcataatagttataagtactttgaatgtgaactcaggaaaaggctaaagatcaa 39469392  T
Q  156 gaagttgcttgtctcctagctgttctacaatgcattatagataacaacctagaattcaaggatctacttaacaagattgacaatcgtattcttgagct 253  Q
    ||||||||| ||||| | |||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||| |||||||| |||||||    
T  39469393 gaagttgctagtctcattgctgttctacaatgcattgtagataacaacctagaatcccaggatctacttaacaagattgacgatcgtattattgagct 39469490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 280 - 541
Target Start/End: Original strand, 39125827 - 39126074
Alignment:
Q  280 gaaagaatgaaaactcatgagcaattaacagggtcatctctatctttgggtcactattctttctttcctttctattgtatattgttcatttttaatttct 379  Q
    |||||||| |||| ||| || |||||||||||||||||| ||||||||| | ||| ||||||||||     |||||||||||||||  ||||||||||||    
T  39125827 gaaagaat-aaaattcaagatcaattaacagggtcatctttatctttggcttactgttctttcttt-----ctattgtatattgtttgtttttaatttct 39125920  T
Q  380 caaaggcttaaatttgatatgcagaaacgttttcatatgcaaactagttttttagagttcattgccacagttttgttcgcaaagtttatgtaattagctt 479  Q
    |||||||||||| |||||||||| ||| |||||||||| |||| ||| | |||||||| || ||||||| ||||||| ||||| ||||||||||||        
T  39125921 caaaggcttaaacttgatatgcataaatgttttcatatacaaattagctatttagagtaca-tgccacacttttgtttgcaaattttatgtaatta---- 39126015  T
Q  480 catacgcttgatgca--gaagttctccaagagttatctctcatttgttcggagaaaattgaaat 541  Q
         ||||||||||  | |||| ||||||||||||||||||||||||  ||||||||||||||    
T  39126016 -----gcttgatgcagtgtagttgtccaagagttatctctcatttgttaagagaaaattgaaat 39126074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 56 - 279
Target Start/End: Original strand, 39125492 - 39125728
Alignment:
Q  56 cttattcaatttttattttatgaaacattccaattttcataacccttcatgatagttataa------atactttgaatgtgaactca---ggacaaggcc 146  Q
    |||||||||||| ||||| ||||||||||||| | ||||||  ||||||||||||||||||      |||||||||| ||   ||||   ||||||||||    
T  39125492 cttattcaatttctattt-atgaaacattcca-tcttcatacaccttcatgatagttataattataaatactttgaacgttttctcatcaggacaaggcc 39125589  T
Q  147 agagatcaagaagttgcttgtctcctagctgttctacaatgcattatagataacaacctagaattcaaggatctacttaacaagattgacaatcgtattc 246  Q
    |||| ||| ||||||||| ||||| |||||||| | ||||||| |||||||||||||||| ||||||||||| |||||||||||||| ||  | ||||||    
T  39125590 agaggtcaggaagttgctagtctcgtagctgttatccaatgcaatatagataacaacctaaaattcaaggatttacttaacaagatttacgcttgtattc 39125689  T
Q  247 ttgagct------acagagaggcaaatagtgtttttact 279  Q
    |||||||      ||||||||||||||||||||||||||    
T  39125690 ttgagctgaaaagacagagaggcaaatagtgtttttact 39125728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 280 - 541
Target Start/End: Complemental strand, 39470801 - 39470541
Alignment:
Q  280 gaaagaatgaaaactcatgagcaa--ttaacagggtcatctctatctttgggtcactattctttctttcctttctattgtatattgttcatttttaattt 377  Q
    ||||||||||||||||||||  |   ||||||||||||||||||| ||||| ||  |||||||||| || |  ||  ||   || |||||||||||||||    
T  39470801 gaaagaatgaaaactcatgataatagttaacagggtcatctctatttttggttctgtattctttctatc-taactcatgataatagttcatttttaattt 39470703  T
Q  378 ctcaaaggcttaaatttgatatgcag-aaacgttttcatatgcaaactagttttttagagttcattgccacagttttgttcgcaaagtttatgtaattag 476  Q
    ||||||||||||| ||||||  | || ||| |||||||||  |||||||||| ||| |||| || ||||||  |||||||| ||| |||| |||||||||    
T  39470702 ctcaaaggcttaagtttgatgcgtagaaaatgttttcata-acaaactagttatttggagtaca-tgccacgcttttgttcacaatgtttttgtaattag 39470605  T
Q  477 cttc-atacgcttgatgcagaagttctccaagagttatctctcatttgttcggagaaaattgaaat 541  Q
    |||| |||| ||||||||| ||||||  |||||  | |||||||||||||| |||||| |||||||    
T  39470604 cttcaatacacttgatgcaaaagttcctcaaga--tttctctcatttgttccgagaaagttgaaat 39470541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 67 - 244
Target Start/End: Complemental strand, 39425124 - 39424947
Alignment:
Q  67 tttattttatgaaacattccaattttcataacccttcatgatagttataaatactttgaatgtgaactcaggacaaggccagagatcaagaagttgcttg 166  Q
    ||||||||||||||||||||| | |||| | || ||||| ||||||||||||||||||||  || || ||||| || |||| |||||||||| ||||| |    
T  39425124 tttattttatgaaacattcca-tcttcacaccctttcataatagttataaatactttgaacttgtacacaggaaaaagccatagatcaagaaattgctag 39425026  T
Q  167 tctcctagctgttctacaatgcattatagataacaacctagaat-tcaaggatctacttaacaagattgacaatcgtat 244  Q
    ||||  ||||||  |||| || |||  |||||||||||||||||   | ||||||||||||||| |||||  |||||||    
T  39425025 tctcgaagctgtagtacagtgtattggagataacaacctagaatcagagggatctacttaacaacattgatgatcgtat 39424947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 70 - 233
Target Start/End: Original strand, 39145370 - 39145532
Alignment:
Q  70 attttatgaaacattccaattttcataacccttcatgatagttataaatactttgaatgtgaactcaggacaaggccagagatcaagaagttgcttgtct 169  Q
    |||||||||||||||||| | |||||| |  |||||  |||||||||||||||||||  ||||| ||||| || ||| ||||||||||  ||||| ||||    
T  39145370 attttatgaaacattcca-tcttcataccatttcatcgtagttataaatactttgaacatgaacacaggataaagcctgagatcaagagattgctagtct 39145468  T
Q  170 cctagctgttctacaatgcattatagataacaacctagaattcaaggatctacttaacaagatt 233  Q
    |  ||||||||||||||| ||    |||||||| |||||||   || ||| |||||||||||||    
T  39145469 cggagctgttctacaatgtataggtgataacaagctagaatctgagaatcaacttaacaagatt 39145532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 129 - 191
Target Start/End: Complemental strand, 39396016 - 39395954
Alignment:
Q  129 tgaactcaggacaaggccagagatcaagaagttgcttgtctcctagctgttctacaatgcatt 191  Q
    ||||||||||| |||||||||||||||||| ||||||||||   | |||||||||||||||||    
T  39396016 tgaactcaggataaggccagagatcaagaaattgcttgtctgggaactgttctacaatgcatt 39395954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 39180008 - 39180089
Alignment:
Q  129 tgaactcaggacaaggccagagatcaagaagttgcttgtctcctagctgttctacaatgcattatagataacaacctagaat 210  Q
    ||||||||||| |||||||||||||||||| ||||| ||||     |||||||||||||||||  ||| |||||||| ||||    
T  39180008 tgaactcaggataaggccagagatcaagaaattgctagtcttgggactgttctacaatgcatttcagacaacaaccttgaat 39180089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 191
Target Start/End: Complemental strand, 39386102 - 39386040
Alignment:
Q  129 tgaactcaggacaaggccagagatcaagaagttgcttgtctcctagctgttctacaatgcatt 191  Q
    ||||||||||| |||||||||||||||||| ||||| ||||     |||||||||||||||||    
T  39386102 tgaactcaggataaggccagagatcaagaaattgctagtctggggactgttctacaatgcatt 39386040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 39225015 - 39225055
Alignment:
Q  129 tgaactcaggacaaggccagagatcaagaagttgcttgtct 169  Q
    ||||||||||| |||||||||||||||||| ||||| ||||    
T  39225015 tgaactcaggataaggccagagatcaagaaattgctagtct 39225055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 39372498 - 39372538
Alignment:
Q  129 tgaactcaggacaaggccagagatcaagaagttgcttgtct 169  Q
    ||||||||||| |||||||||||||||||| ||||| ||||    
T  39372498 tgaactcaggataaggccagagatcaagaaattgctagtct 39372538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 124 - 245
Target Start/End: Original strand, 38599532 - 38599661
Alignment:
Q  124 gaatgtgaactcaggacaaggccagagatcaagaagttgcttgtctcctagctgttctacaatgcattataga--------taacaacctagaattcaag 215  Q
    |||| |||||||| |||||||||||| ||||| |||||||| ||||| ||| ||||||||  |||||||||||        |||||||||||||| | ||    
T  38599532 gaatatgaactcatgacaaggccagacatcaaaaagttgctagtctcatagttgttctacggtgcattatagatatcaagttaacaacctagaatcccag 38599631  T
Q  216 gatctacttaacaagattgacaatcgtatt 245  Q
    ||||||||||||||||||||| ||| ||||    
T  38599632 gatctacttaacaagattgacgatcatatt 38599661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 169
Target Start/End: Original strand, 51577114 - 51577213
Alignment:
Q  69 tattttatgaaacattccaattttcataacccttcatgatagttataaatactttgaatgtgaactcaggacaaggccagagatcaagaagttgcttgtc 168  Q
    |||||||||| |||||||| |||||||   ||| || ||||||||||||||  ||||||||||| |||||| || || ||||| |||||| ||||| |||    
T  51577114 tattttatgatacattcca-ttttcatgtacctgcacgatagttataaataagttgaatgtgaattcaggataaagcaagagaccaagaaattgctagtc 51577212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 16115538 - 16115610
Alignment:
Q  118 tactttgaatgtgaactcaggacaaggccagagatcaagaagttgcttgtctcctagctgttctacaatgcat 190  Q
    |||||||||  ||||||||||| ||||| |||||||||||| | ||| ||||   | ||||||||||||||||    
T  16115538 tactttgaacttgaactcaggataaggctagagatcaagaaatcgctagtctgggaactgttctacaatgcat 16115610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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