View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4136_low_3 (Length: 474)
Name: NF4136_low_3
Description: NF4136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4136_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 18 - 463
Target Start/End: Complemental strand, 41010967 - 41010522
Alignment:
| Q |
18 |
caagctcgagaagaatatgatttcattgcagattctaaactttgcattccatgtaatgaacatcttttccttagtgttcttagttttgctagctccacac |
117 |
Q |
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| T |
41010967 |
caagctcgagaagaatatgatttcattgcagattctaaactttgtattccatgtaatgaacatcttttccttagtgttcttagttttgctagctccacac |
41010868 |
T |
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| Q |
118 |
ataatgaaaaggtgtttgtttgtgtctgacatgagaaatttatcatcctttaattttacttgagacattagttcatatattatactagcttttaagttct |
217 |
Q |
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| T |
41010867 |
ataatgaaaaggtgtttgtttgtgtctgacatgagaaatttatcatcctttaattttacttgagacattagttcatatattatactagcttttaagttct |
41010768 |
T |
|
| Q |
218 |
aacagctatgctgatatatatagttgattgatgtgttgattaagtgtcatgtatgtagagtgccaatttgaatcaattaattcaggaacatgaggttcct |
317 |
Q |
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| T |
41010767 |
aacagctatgctgatatatatagttgattcatgtgttgattaagtgtcatgtatgtagagtgccaatttgaatcaattaattcaggaacatgaggctcct |
41010668 |
T |
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| Q |
318 |
gttctgttttctttgttctaaataaggaaagagttttgttttttattggcattttaatgtaggaaaatgagattttgacacacaaatgacgtcaaagttc |
417 |
Q |
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| T |
41010667 |
gttctgttttctttgttctaaataaggaaagagttttgttttttattggcattttaatgtaggaaaatgagattttgacacacaaatgacgtcaaagttc |
41010568 |
T |
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| Q |
418 |
gacaacaatttaaatagttaacacgttgtctatgtgagtgagtata |
463 |
Q |
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| T |
41010567 |
gacaacaatttaaatagttaacacgttgtctatgtaagtgactata |
41010522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 28118900 - 28118978
Alignment:
| Q |
16 |
atcaagctcgagaagaatatgatttcattgcagattctaaactttgcattccatgtaatgaacatcttttccttagtgt |
94 |
Q |
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||||||||| |||||| ||||||||||| || ||||| ||||| || ||||| ||| |||||||||||||||| ||||| |
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| T |
28118900 |
atcaagctcaagaagagtatgatttcatggctgattcaaaactatgtattccttgtcatgaacatcttttcctaagtgt |
28118978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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