View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4136_low_5 (Length: 457)
Name: NF4136_low_5
Description: NF4136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4136_low_5 |
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| [»] scaffold0012 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 11 - 443
Target Start/End: Complemental strand, 44989833 - 44989406
Alignment:
| Q |
11 |
catcatcaaagttatgttatctcctttaagaaggatcctccctaatcaacaataacatcattcagaaaatgcatatgttgcaaagacaaaaaggataaac |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44989833 |
catcatcaaagttatgttatctcctttaagaaggatcctccctaatcaacaataacatcattcagaaaatgcatatgttgcaaagacaaaaaggataaac |
44989734 |
T |
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| Q |
111 |
tttgagaaatttatcttacctagtgtctttttgctcttcttcttgacgtttacttcttcagcatcatccaaaaccaaattcatgtattcatcaaaaccct |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44989733 |
tttgagaaatttatcttacctagtgtctttttgctcttcttcttgacgtttacttcttcagcatcatccaaaaccaaattcatgtattcatcaaaaccct |
44989634 |
T |
|
| Q |
211 |
atttataacaaaaataaaatcacaagatccttaagtcttaaccatccactcaaatatccaatttgaaatgagatgtaccatgtacactctataccaaaaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44989633 |
atttataacaaaaataaaatcacaagatccttaagtcttaaccatccactcaaatatccaatttgaaatgagatgtaccatgtacactctataccaaaaa |
44989534 |
T |
|
| Q |
311 |
caataagaaaacattttcccccaagaaatgagctcatgaatcaaaaagtttacaaactcctaaactgttgaaagagaggaatgagattcaaattcaaagt |
410 |
Q |
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| T |
44989533 |
caataagcaaacattttcccccaagaaatgagctcatgaatcaaaaagtttacaaactcctaaactgttgaaagagaggaatgagattca-----aaagt |
44989439 |
T |
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| Q |
411 |
tttgtataacaaggagttggccaagataaatgt |
443 |
Q |
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| T |
44989438 |
tttgtataacaaggagttggccaagataaatgt |
44989406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 178; Significance: 8e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 11 - 441
Target Start/End: Complemental strand, 30884790 - 30884365
Alignment:
| Q |
11 |
catcatcaaagttatgttatctcctttaagaaggatcctccctaatcaa--caataacatcattcagaaaatgcatatgttgcaaagacaaaaaggat-a |
107 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| | |||||||||||||| || ||||||||||| | || | |
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| T |
30884790 |
catcatcaaagttatgttgtctcctttaagaaggatcctccctaatcaaaacaataacacccttcagaaaatgcatgagtggcaaagacaaatataatca |
30884691 |
T |
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| Q |
108 |
aactttgagaaatttatcttacctagtgtctttttgctcttcttcttgacgtttacttcttcagcatcatccaaaaccaaattcatgtattcatcaaaac |
207 |
Q |
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| T |
30884690 |
aaatataagaaacatgtattacctaatgtttttttgctcttcttcttgacgtttacttcttcagcatcgtccaaaaccaaattcatgtactcgtcaaaac |
30884591 |
T |
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| Q |
208 |
cctatttataacaaaaataaaatcacaagatccttaagtcttaaccatccactcaaatatccaatttgaaatgag-atgtaccatgtacactctatacca |
306 |
Q |
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| T |
30884590 |
cctgtttaaaacaaaaataagatcacaagatcattaaa----aacct---actaaaaaatccaaattttaatgaggatgtactgtctacactctaa--ca |
30884500 |
T |
|
| Q |
307 |
aaaacaataagaaaacattttcccccaagaaatgagctcatgaatcaaaaagtttacaaactcctaaactgttgaaagagaggaatgagattcaaattca |
406 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |
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| T |
30884499 |
aaaacaataaccaagcattttcccccaagaaatgagctcatgaatcaaaaagtttacaaagtcctaaactgttgaaagagacaaatgaaattcaaattca |
30884400 |
T |
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| Q |
407 |
aagttttgtataacaaggagttggccaagataaat |
441 |
Q |
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| T |
30884399 |
aagttttggataccaaggatgtggccaagataaat |
30884365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 163582 - 163510
Alignment:
| Q |
11 |
catcatcaaagttatgttatctcctttaagaaggatcctccctaatc--aacaataacatcattcagaaaatg |
81 |
Q |
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| T |
163582 |
catcattaaagttatgttatctcctttaagaagaatcctctctaatcaaaacaataacatcattaagaaaatg |
163510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 135 - 244
Target Start/End: Complemental strand, 153540 - 153430
Alignment:
| Q |
135 |
gtctttttgctcttcttcttgacgtttacttcttcagcatcatccaaaaccaaattcatgtattcatcaaaaccctatttataacaa-aaataaaatcac |
233 |
Q |
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|||||||||||||| ||||| || |||||||||||| ||||||||||||||||| ||||| || ||||| |||| |||| || || ||| ||||||| |
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| T |
153540 |
gtctttttgctctttttcttcactcgtacttcttcagcgtcatccaaaaccaaattaatgtactcttcaaagccctgtttaaaaaaataaaataaatcac |
153441 |
T |
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| Q |
234 |
aagatccttaa |
244 |
Q |
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| T |
153440 |
aagatccttaa |
153430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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