View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4136_low_7 (Length: 403)
Name: NF4136_low_7
Description: NF4136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4136_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 13 - 385
Target Start/End: Complemental strand, 5366507 - 5366135
Alignment:
| Q |
13 |
catcaccattaaaaacactttacatgcaatattgcaatacctttgtgcaacaacaactagagtgaatcaaattagattattgatgtgggtctcatacaac |
112 |
Q |
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| T |
5366507 |
catcaccattaaaaacactttacatgcaatattgcaatacctttgtgcaacaacaactagagtgaatcaaattagattattgatgtgggtctcatacaac |
5366408 |
T |
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| Q |
113 |
ttaaatggatacattgtttagacttgtcagttttcaaccacaccaacaacaagaagatcaatctctcaactccaccaccagcagaacaacaacatcaagt |
212 |
Q |
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| T |
5366407 |
ttaaatggatacattgtttagacttgtcagttttcaaccacaccaacaacaagaagatcaatctctcaactccaccaccagcagaacaacaacatcaagt |
5366308 |
T |
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| Q |
213 |
agctctcgatcctcaaaacaaaactatcaccaatattacaatccacaagaagttgaagaagaatgcttcaactttttcatggatgaagaagacctttcct |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5366307 |
agctctcgatcctcaaaacaaaactatcaccaatattacaatccacaagaagttgaagaagaatgcttcaactttttcatggatgaagaagacctttcct |
5366208 |
T |
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| Q |
313 |
catcttcttccaaacactactatccttataatcaacctcaaacctcaaatactattactacaaacacccccac |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5366207 |
catcttcttccaaacactactatccttataatcaacctcaaacctcaaatactattactacaaacacccccac |
5366135 |
T |
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