View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4136_low_9 (Length: 384)
Name: NF4136_low_9
Description: NF4136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4136_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 132 - 372
Target Start/End: Complemental strand, 9071189 - 9070949
Alignment:
| Q |
132 |
ctaagtttaatgaatagccatggactctagggccgacccggtgctcctaagtttatttttcgttggcatcaaaaaatatttcgctagcaacagctacgtg |
231 |
Q |
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| T |
9071189 |
ctaagtttaatgaataaccgtggactctagggccgacccggtgctcctaagtttatttttcgttggcataaaaaaatatttcgctagcaacagctacgtg |
9071090 |
T |
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| Q |
232 |
ccgcgacaatgattagtccgtaactgattttggccgtagccctcgattgagtgttgtctttaatgaggttttggatgtacgagatgtatgagttttattt |
331 |
Q |
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| T |
9071089 |
ccgcgacaatgattagtccgtaactgattttggcggtagccctcgattgagtgttgtctttaatgaggttttggatgtacgagatgtatgagttttattt |
9070990 |
T |
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| Q |
332 |
tgagtgttatgcctacatacatcgtcctttatgttgttatt |
372 |
Q |
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| T |
9070989 |
tgagtgttatgcctacatacatcgtcctttatgttgttatt |
9070949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 9071327 - 9071217
Alignment:
| Q |
19 |
ttaaacaataacattatgaatttctcttaaattttatagttatcttacccgaatgaattttcttgtcactgttactggtttaggctatttatcatcatat |
118 |
Q |
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| T |
9071327 |
ttaaacaataccattatgaatttctcttaaattttatagttatcttacccgaatgaattttcttgtcactgttactggtttaggctatttatcatcatat |
9071228 |
T |
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| Q |
119 |
ccattggtttt |
129 |
Q |
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| T |
9071227 |
ccattggtttt |
9071217 |
T |
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