View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4137_high_13 (Length: 236)
Name: NF4137_high_13
Description: NF4137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4137_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 33433691 - 33433915
Alignment:
| Q |
1 |
ttgcgcctaattttcaatcgaataacccaccaaaagttgatagccaaactaatcccttccctaaatactttcattgaatcctcttctgaatccatctgag |
100 |
Q |
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| T |
33433691 |
ttgcgcctaattttcaatcgaataacccaccaaaagttgatagccaaactaatcccttccctaaatactttcattgaatcctcttctaaatccatctgag |
33433790 |
T |
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| Q |
101 |
aattaacaatagnnnnnnncaca----taaaaagtatattaatattctatgcatcgatatgaaaacaaacttcaacaatagacaagaacgaaagcaaggg |
196 |
Q |
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| T |
33433791 |
aattaacaatagaaaaaaacacataattaaaaagtatattaatattctatgcatcgatatgaaaacaaacttcaacgatagacaagaacgaaagcaaagg |
33433890 |
T |
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| Q |
197 |
gatatattaccttaacttccaaaac |
221 |
Q |
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| T |
33433891 |
ggtatattaccttaacttccaaaac |
33433915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 33970181 - 33970136
Alignment:
| Q |
45 |
caaactaatcccttccctaaatactttcattgaatcctcttctgaa |
90 |
Q |
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| T |
33970181 |
caaactaatccctttcctcaatactttcattgaatcctcttctgaa |
33970136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 175
Target Start/End: Complemental strand, 33965595 - 33965553
Alignment:
| Q |
133 |
tattaatattctatgcatcgatatgaaaacaaacttcaacaat |
175 |
Q |
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| T |
33965595 |
tattattattctatgcatcgatattaaaacaaacttcaacaat |
33965553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 33111659 - 33111609
Alignment:
| Q |
27 |
ccaccaaaagttgatagccaaactaatcccttccctaaatactttcattga |
77 |
Q |
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| T |
33111659 |
ccaccaaaagttgataaccatattaatcccatccctgaatactttcattga |
33111609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 172
Target Start/End: Complemental strand, 33970080 - 33970042
Alignment:
| Q |
134 |
attaatattctatgcatcgatatgaaaacaaacttcaac |
172 |
Q |
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|||| |||||||||||||||||| ||||||||||||||| |
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| T |
33970080 |
attattattctatgcatcgatataaaaacaaacttcaac |
33970042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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