View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4137_high_3 (Length: 375)

Name: NF4137_high_3
Description: NF4137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4137_high_3
NF4137_high_3
[»] chr6 (2 HSPs)
chr6 (111-354)||(12187643-12187900)
chr6 (1-116)||(12187482-12187597)
[»] chr1 (6 HSPs)
chr1 (192-354)||(9443575-9443741)
chr1 (192-301)||(10303926-10304036)
chr1 (187-295)||(42267301-42267410)
chr1 (56-116)||(3973989-3974048)
chr1 (221-301)||(42267515-42267595)
chr1 (198-295)||(10304176-10304274)
[»] chr2 (4 HSPs)
chr2 (192-295)||(16105555-16105659)
chr2 (191-327)||(11721376-11721516)
chr2 (186-300)||(11689538-11689653)
chr2 (192-295)||(17266651-17266757)
[»] scaffold0027 (1 HSPs)
scaffold0027 (226-354)||(14050-14180)
[»] chr5 (9 HSPs)
chr5 (192-297)||(15644727-15644833)
chr5 (219-354)||(5326283-5326416)
chr5 (186-342)||(14848978-14849138)
chr5 (192-301)||(14848742-14848852)
chr5 (186-301)||(12904751-12904867)
chr5 (192-298)||(5326060-5326167)
chr5 (192-301)||(15645027-15645137)
chr5 (13-47)||(22564362-22564396)
chr5 (219-295)||(4700433-4700509)
[»] chr8 (9 HSPs)
chr8 (223-338)||(9499642-9499758)
chr8 (257-354)||(9499857-9499956)
chr8 (191-301)||(22890100-22890210)
chr8 (268-354)||(2693776-2693865)
chr8 (223-292)||(10794210-10794279)
chr8 (230-295)||(11754845-11754910)
chr8 (192-295)||(31873220-31873324)
chr8 (219-301)||(20050114-20050196)
chr8 (220-327)||(24085806-24085916)
[»] chr7 (3 HSPs)
chr7 (192-295)||(15714613-15714717)
chr7 (260-338)||(41075553-41075631)
chr7 (195-298)||(41075787-41075891)
[»] chr4 (4 HSPs)
chr4 (186-327)||(11857889-11858034)
chr4 (56-116)||(45680261-45680321)
chr4 (192-298)||(7280212-7280319)
chr4 (278-354)||(16605692-16605770)
[»] chr3 (5 HSPs)
chr3 (189-301)||(26479240-26479353)
chr3 (192-294)||(20704433-20704536)
chr3 (191-301)||(30381059-30381170)
chr3 (192-301)||(44654620-44654729)
chr3 (226-299)||(14633890-14633963)
[»] scaffold0291 (1 HSPs)
scaffold0291 (197-298)||(6746-6848)
[»] scaffold0181 (1 HSPs)
scaffold0181 (223-301)||(9418-9496)


Alignment Details
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 111 - 354
Target Start/End: Original strand, 12187643 - 12187900
Alignment:
Q  111 accttacatagtatgaacaaactttttaaatatggttaaataggatgaatgtcacgtatttacggtacatatatctttggtttttatatgtgtttagtct 210  Q
    |||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12187643 accttaaagagtatgaacaaactttttaaatatggttaaacaggatgaatgtcacgtatttacagtacatatatctttggtttttatatgtgtttagtct 12187742  T
Q  211 ctgtatatggggtcatttaa--------------aaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatcatttaaaatttg 296  Q
    ||||||||||||||||||||              |||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||    
T  12187743 ctgtatatggggtcatttaaaaaattaatcatttaaaatggtctctacattccttcattatgacattttgccctcccaaaaattaatcattaaaaatttg 12187842  T
Q  297 gtcccctctactcaatcactgtcacgtcactggattagctgacgtgacacattgactc 354  Q
    |||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  12187843 gtcccccctactcaatcactgtcacgtcactggattagctgacgtggtacattgactc 12187900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 12187482 - 12187597
Alignment:
Q  1 gcatgaaacagaactaagtagtgcccaaaataactaatggactaagcaacaaactatgaaaattaaatgaaagagagacaagtttcgccttcaaccacgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  12187482 gcatgaaacagaactaagtagtgcccaaaataactaatggactaagcaacaaaccatgaaaattaaacgaaagagagacaagtttcgccttcaaccacgt 12187581  T
Q  101 aaaggaaagaacctta 116  Q
    ||||||||||||||||    
T  12187582 aaaggaaagaacctta 12187597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 192 - 354
Target Start/End: Original strand, 9443575 - 9443741
Alignment:
Q  192 ttttatatgtgtttagtctctgtatat-ggggtcatttaaaaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatcatttaa 290  Q
    ||||||||||||||||||  || | || |||||||||||||||||| |||||  ||||||||||  || |||||||||||||||||| ||||||||||||    
T  9443575 ttttatatgtgtttagtccttgcaaataggggtcatttaaaaaatggtctctgtattccttaatcctggcattttgtcctcccaaaatttaatcatttaa 9443674  T
Q  291 aatttggtc---ccctctactcaatcactgtcacgtcactggattagctgacgtgacacattgactc 354  Q
    |||||||||   ||| | ||| ||||| ||||| |||||| |||||||||||||| |||||||||||    
T  9443675 aatttggtccctccccccacttaatcattgtcaagtcactagattagctgacgtggcacattgactc 9443741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 192 - 301
Target Start/End: Original strand, 10303926 - 10304036
Alignment:
Q  192 ttttatatgtgtttagtctctgtatatggg-gtcatttaaaaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatcatttaa 290  Q
    |||||||||||||| ||||||| | || || ||||||||||||||||||| |  |||| |||||  || || |||| ||| |||||| ||||||||||||    
T  10303926 ttttatatgtgtttggtctctgcaaataggagtcatttaaaaaatgatctatgtattcgttaatcctggcaatttgcccttccaaaatttaatcatttaa 10304025  T
Q  291 aatttggtccc 301  Q
    ||||| |||||    
T  10304026 aatttcgtccc 10304036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 295
Target Start/End: Original strand, 42267301 - 42267410
Alignment:
Q  187 ttggtttttatatgtgtttagtctctgtatat-ggggtcatttaaaaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatca 285  Q
    |||| ||||||||||||||| || ||| | || ||||||||||||||| || || ||  |||| |||||  ||||| |||||||| |||||| |||||||    
T  42267301 ttggcttttatatgtgtttattccctgcaaataggggtcatttaaaaattggtccctgtattctttaatcctgacaatttgtcctgccaaaatttaatca 42267400  T
Q  286 tttaaaattt 295  Q
    ||||| ||||    
T  42267401 tttaatattt 42267410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 3973989 - 3974048
Alignment:
Q  56 atgaaaattaaatgaaagagagacaagtttcgccttcaaccacgtaaaggaaagaacctta 116  Q
    ||||||||| |||||||||||||||| ||||||||||||||||  | |||||||| |||||    
T  3973989 atgaaaatttaatgaaagagagacaa-tttcgccttcaaccacacataggaaagagcctta 3974048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 301
Target Start/End: Complemental strand, 42267595 - 42267515
Alignment:
Q  221 ggtcatttaaaaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatcatttaaaatttggtccc 301  Q
    |||||||||||||||| |||||  ||||||||||  || ||||||| ||| |||||| ||||||| || ||| ||||||||    
T  42267595 ggtcatttaaaaaatggtctctgtattccttaatcctggcattttgccctaccaaaatttaatcacttcaaaattggtccc 42267515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 295
Target Start/End: Complemental strand, 10304274 - 10304176
Alignment:
Q  198 atgtgtttagtctctgtatat-ggggtcatttaaaaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatcatttaaaattt 295  Q
    |||||||||||| ||| | || |||||||||||||||||| ||  |  |||| |||||| || || |||| | |||||||| |||||||||||||||||    
T  10304274 atgtgtttagtccctgcaaataggggtcatttaaaaaatggtcaatgtattcgttaattctggcaatttgccttcccaaaatttaatcatttaaaattt 10304176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 192 - 295
Target Start/End: Original strand, 16105555 - 16105659
Alignment:
Q  192 ttttatatgtgtttagtctctgtatat-ggggtcatttaaaaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatcatttaa 290  Q
    |||||||||||||||||| ||||| || |||| ||||||||||||| || || |||||||||||  |||||||||| |||||||||| ||||||||||||    
T  16105555 ttttatatgtgtttagtccctgtaaataggggccatttaaaaaatggtccctgcattccttaatcctgacattttgccctcccaaaatttaatcatttaa 16105654  T
Q  291 aattt 295  Q
    |||||    
T  16105655 aattt 16105659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 327
Target Start/End: Complemental strand, 11721516 - 11721376
Alignment:
Q  191 tttttatatgtgtttagtctctgtatat-ggggtcatttaaaaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatcattta 289  Q
    |||||||||||||||||||| || | || ||||||||||||||| ||||| ||  |||| |||||  ||||||||| |||| |||||| ||||||| |||    
T  11721516 tttttatatgtgtttagtctttggaaataggggtcatttaaaaattgatccctgtattctttaatcctgacattttatcctgccaaaatttaatcactta 11721417  T
Q  290 aaatttggtc---ccctctactcaatcactgtcacgtcact 327  Q
    |||||| |||   | | | ||| ||||||||||||||||||    
T  11721416 aaatttcgtctctctccccacttaatcactgtcacgtcact 11721376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 300
Target Start/End: Original strand, 11689538 - 11689653
Alignment:
Q  186 tttggtttttatatgtgtttagtctctgtatat-ggggtcatttaaaaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatc 284  Q
    ||||| ||||||||||||||||||  || | || ||||||||||||||| ||||| ||  |||| |||||   | ||||||||||| |||||| ||||||    
T  11689538 tttgggttttatatgtgtttagtccttggaaataggggtcatttaaaaattgatccctgtattctttaatcccggcattttgtcctgccaaaatttaatc 11689637  T
Q  285 atttaaaatttggtcc 300  Q
    | ||||||||| ||||    
T  11689638 acttaaaatttcgtcc 11689653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 295
Target Start/End: Complemental strand, 17266757 - 17266651
Alignment:
Q  192 ttttatatgtgtttagtctctgtatat--ggggtcatttaaaaaa-tgatctctacattccttaattatgacattttgtcctcccaaaaattaatcattt 288  Q
    |||||||||||||||||  ||| | ||  |||||||||||||||| || |||||  |||| |||||  ||||| |||| |||||||||| ||||||||||    
T  17266757 ttttatatgtgtttagttcctgcaaatagggggtcatttaaaaaaatggtctctgtattcgttaatcttgacaatttgccctcccaaaatttaatcattt 17266658  T
Q  289 aaaattt 295  Q
    |||||||    
T  17266657 aaaattt 17266651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 226 - 354
Target Start/End: Complemental strand, 14180 - 14050
Alignment:
Q  226 tttaaaaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatcatttaaaatttggtcc--cctctactcaatcactgtcacgt 323  Q
    ||||||||||  |||||  ||||||||||  ||| |||||| |||||||||| ||||||||||||||||||||||  || | ||| ||||| ||||||||    
T  14180 tttaaaaaatagtctctctattccttaatcctgatattttgccctcccaaaatttaatcatttaaaatttggtccctcccccacttaatcattgtcacgt 14081  T
Q  324 cactggattagctgacgtgacacattgactc 354  Q
    |||| |||||||||||||| |||||| ||||    
T  14080 cactagattagctgacgtggcacattaactc 14050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 192 - 297
Target Start/End: Original strand, 15644727 - 15644833
Alignment:
Q  192 ttttatatgtgtttagtctctgtatatgg-ggtcatttaaaaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatcatttaa 290  Q
    |||||||||||||||||| ||||| || | ||||||||||||||||||| |   ||||||||||  ||||||||| ||||||||||| ||||||||| ||    
T  15644727 ttttatatgtgtttagtccctgtaaatagaggtcatttaaaaaatgatccccgtattccttaatcctgacattttttcctcccaaaatttaatcattcaa 15644826  T
Q  291 aatttgg 297  Q
    |||||||    
T  15644827 aatttgg 15644833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 219 - 354
Target Start/End: Complemental strand, 5326416 - 5326283
Alignment:
Q  219 ggggtcatttaaaaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatcatttaaaatttggtc---ccctctactcaatcac 315  Q
    |||||||||||||||||| ||  | ||||||||||| ||| |||||||||||||||||| ||||| |||||||||| ||||   ||| | ||| ||||||    
T  5326416 ggggtcatttaaaaaatggtccatgcattccttaatcatggcattttgtcctcccaaaatttaataatttaaaattcggtcgctccccccacttaatcac 5326317  T
Q  316 tgtcacgtcactggattagctgacgtgacacattgactc 354  Q
    |     |||||| |||||||||||||| |||||||||||    
T  5326316 t-----gtcactagattagctgacgtggcacattgactc 5326283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 186 - 342
Target Start/End: Complemental strand, 14849138 - 14848978
Alignment:
Q  186 tttggtttttatatgtgtttagtctctgtatatgggg-tcatttaaaaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatc 284  Q
    ||||| ||||||||||||||||||  | || || ||| |||||||||||||| ||  |  ||||||||||  || ||||||| ||| |||||| ||||||    
T  14849138 tttggcttttatatgtgtttagtccttctaaatagggatcatttaaaaaatggtccatgtattccttaatcgtggcattttgccctaccaaaatttaatc 14849039  T
Q  285 atttaaaatttggtccc---ctctactcaatcactgtcacgtcactggattagctgacgtg 342  Q
    |||||||||||||||||   | | ||| |||||||| ||| ||||| ||||||||||||||    
T  14849038 atttaaaatttggtccctcaccccacttaatcactgccacatcactagattagctgacgtg 14848978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 301
Target Start/End: Original strand, 14848742 - 14848852
Alignment:
Q  192 ttttatatgtgtttagtctctgtatatgggg-tcatttaaaaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatcatttaa 290  Q
    |||||||||||||||||| ||| | || ||| |||||||||||||| | | | |||||||||||  |  ||||||  |||||||||| ||||||||||||    
T  14848742 ttttatatgtgtttagtccctgcaaatagggatcatttaaaaaatggtttgtgcattccttaatccttgcatttttccctcccaaaatttaatcatttaa 14848841  T
Q  291 aatttggtccc 301  Q
    |||||||||||    
T  14848842 aatttggtccc 14848852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 186 - 301
Target Start/End: Original strand, 12904751 - 12904867
Alignment:
Q  186 tttggtttttatatgtgtttagtctctgtatatgggg-tcatttaaaaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatc 284  Q
    ||||| |||||||| ||||||||| || || || ||| |||||||||||||| || ||  |||| |||||  ||||| ||||||||||||||| |||||     
T  12904751 tttggcttttatatctgtttagtccctctaaatagggatcatttaaaaaatggtccctgtattcgttaatcctgacaatttgtcctcccaaaatttaata 12904850  T
Q  285 atttaaaatttggtccc 301  Q
    ||||||||||| |||||    
T  12904851 atttaaaatttcgtccc 12904867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 298
Target Start/End: Original strand, 5326060 - 5326167
Alignment:
Q  192 ttttatatgtgtttagtctctgtatat-ggggtcatttaaaaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatcatttaa 290  Q
    ||||||||||||||| || ||| | || |||||||||||||||||| || || |||||||||||  || ||||||| |||  ||||| |||||| |||||    
T  5326060 ttttatatgtgtttaatccctgcaaataggggtcatttaaaaaatggtccctgcattccttaatcctggcattttgccctttcaaaatttaatcttttaa 5326159  T
Q  291 aatttggt 298  Q
    ||||||||    
T  5326160 aatttggt 5326167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 192 - 301
Target Start/End: Complemental strand, 15645137 - 15645027
Alignment:
Q  192 ttttatatgtgtttagtctctgtatatg-gggtcatttaaaaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatcatttaa 290  Q
    |||||||||||||||||  ||| | ||| |||||||||||||| || | | |  |||| |||||  |||||||||| |||||||||| ||||||||||||    
T  15645137 ttttatatgtgtttagttcctgcaaatgtgggtcatttaaaaattggtttatgtattcgttaatcctgacattttgccctcccaaaatttaatcatttaa 15645038  T
Q  291 aatttggtccc 301  Q
    ||||| |||||    
T  15645037 aatttcgtccc 15645027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 22564396 - 22564362
Alignment:
Q  13 actaagtagtgcccaaaataactaatggactaagc 47  Q
    |||||||||||||||||||| ||||||||||||||    
T  22564396 actaagtagtgcccaaaatagctaatggactaagc 22564362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 295
Target Start/End: Complemental strand, 4700509 - 4700433
Alignment:
Q  219 ggggtcatttaaaaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatcatttaaaattt 295  Q
    ||||||||||||||||||||   |  |||| |||||||||||| |||  ||| |||||| || ||||||||||||||    
T  4700509 ggggtcatttaaaaaatgattcttgtattcattaattatgacaattttcccttccaaaattttatcatttaaaattt 4700433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 223 - 338
Target Start/End: Original strand, 9499642 - 9499758
Alignment:
Q  223 tcatttaaaaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatcatttaaaatttggt-cccctctactcaatcactgtcac 321  Q
    |||||||||||||| ||  |  ||||||||||| || ||||||||| || ||||  |||||||||||||||||||| |||| | ||| |||||||| |||    
T  9499642 tcatttaaaaaatggtccatgtattccttaattctggcattttgtcatcgcaaagtttaatcatttaaaatttggtccccccccactgaatcactgccac 9499741  T
Q  322 gtcactggattagctga 338  Q
    |||||| ||||||||||    
T  9499742 gtcactagattagctga 9499758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 257 - 354
Target Start/End: Complemental strand, 9499956 - 9499857
Alignment:
Q  257 tgacattttgtcctcccaaaaattaatcatttaaaatttggtccc--ctctactcaatcactgtcacgtcactggattagctgacgtgacacattgactc 354  Q
    |||||||||  |||||||||| |||||||||||||||||| ||||  | | ||| |||||||||||||||||| ||||||| |||||  |||||||||||    
T  9499956 tgacattttaccctcccaaaatttaatcatttaaaatttgatccctcccccacttaatcactgtcacgtcactagattagccgacgtcccacattgactc 9499857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 191 - 301
Target Start/End: Original strand, 22890100 - 22890210
Alignment:
Q  191 tttttatatgtgtttagtctctgtatat-ggggtcatttaaaaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatcattta 289  Q
    ||||||||||||||||||| | ||| || |||||||||||||||||| ||| |  |||||||||| ||||||||||||||   ||||| ||||||| |||    
T  22890100 tttttatatgtgtttagtcccggtaaataggggtcatttaaaaaatggtct-tgtattccttaatcatgacattttgtcccgtcaaaatttaatcactta 22890198  T
Q  290 aaatttggtccc 301  Q
    ||| ||||||||    
T  22890199 aaaattggtccc 22890210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 268 - 354
Target Start/End: Complemental strand, 2693865 - 2693776
Alignment:
Q  268 cctcccaaaaattaatcatttaaaatttggtc---ccctctactcaatcactgtcacgtcactggattagctgacgtgacacattgactc 354  Q
    |||||||||| ||||||||||||||||||||    ||| | ||| |||||||||||||||||| |||||| |||||||  ||||||||||    
T  2693865 cctcccaaaatttaatcatttaaaatttggttactccccccacttaatcactgtcacgtcactagattagatgacgtggtacattgactc 2693776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 292
Target Start/End: Original strand, 10794210 - 10794279
Alignment:
Q  223 tcatttaaaaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatcatttaaaa 292  Q
    |||||||||||||||||  || ||||||||||||||||||||| |||| |||||  ||||||| ||||||    
T  10794210 tcatttaaaaaatgatcattatattccttaattatgacattttatcctgccaaagtttaatcacttaaaa 10794279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 295
Target Start/End: Complemental strand, 11754910 - 11754845
Alignment:
Q  230 aaaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatcatttaaaattt 295  Q
    |||||||||| ||| ||| ||||||| |||||||||  |||||||||| |||||||||||||||||    
T  11754910 aaaaatgatccctaaatttcttaattctgacattttaccctcccaaaatttaatcatttaaaattt 11754845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 295
Target Start/End: Complemental strand, 31873324 - 31873220
Alignment:
Q  192 ttttatatgtgtttagtctctgtatatg-gggtcatttaaaaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatcatttaa 290  Q
    |||||||||||||||||| ||| | ||  ||||||||||||||||| ||  |  |||| |||||  || || |||| |||||||||| ||||||||||||    
T  31873324 ttttatatgtgtttagtccctgcaaatatgggtcatttaaaaaatggtccttttattcgttaatcttggcaatttgccctcccaaaatttaatcatttaa 31873225  T
Q  291 aattt 295  Q
    |||||    
T  31873224 aattt 31873220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 301
Target Start/End: Original strand, 20050114 - 20050196
Alignment:
Q  219 ggggtcatttaaaaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatcatttaaaatttggtccc 301  Q
    ||||||||||||||| || ||  |  ||||||||||| || ||||||| ||| |||||| ||||||| ||||||||| |||||    
T  20050114 ggggtcatttaaaaattggtccatgtattccttaattctggcattttgccctgccaaaatttaatcacttaaaatttcgtccc 20050196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 327
Target Start/End: Original strand, 24085806 - 24085916
Alignment:
Q  220 gggtcatttaaaaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatcatttaaaatttggtccc---ctctactcaatcact 316  Q
    ||||||| ||||||||| ||  |  ||| ||||||  |||||||||||||| |||||| ||||||  ||||||||| |||||   | | ||| |||||||    
T  24085806 gggtcatataaaaaatggtccttgtatttcttaatcctgacattttgtcctgccaaaatttaatcgcttaaaattttgtccctctccccacttaatcact 24085905  T
Q  317 gtcacgtcact 327  Q
    |||||||||||    
T  24085906 gtcacgtcact 24085916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 192 - 295
Target Start/End: Complemental strand, 15714717 - 15714613
Alignment:
Q  192 ttttatatgtgtttagtctctgtatat-ggggtcatttaaaaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatcatttaa 290  Q
    |||||||||||||||||| ||| | || ||||||||||||||| || ||||| |||||||||||  |||||||||| ||| |||| | ||||||| ||||    
T  15714717 ttttatatgtgtttagtccctgcaaataggggtcatttaaaaattggtctctgcattccttaatcctgacattttgccctgccaagatttaatcacttaa 15714618  T
Q  291 aattt 295  Q
     ||||    
T  15714617 cattt 15714613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 338
Target Start/End: Original strand, 41075553 - 41075631
Alignment:
Q  260 cattttgtcctcccaaaaattaatcatttaaaatttggtcccctctactcaatcactgtcacgtcactggattagctga 338  Q
    ||||| |||||||||||| | |||||||||||||||||||||  | ||| |||||||| ||||| |||  |||||||||    
T  41075553 catttggtcctcccaaaattaaatcatttaaaatttggtccctcccacttaatcactgccacgttactatattagctga 41075631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 298
Target Start/End: Complemental strand, 41075891 - 41075787
Alignment:
Q  195 tatatgtgtttagtctctgtatat-ggggtcatttaaaaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatcatttaaaat 293  Q
    ||||||||||||| || || | || |||||||||||||||||| ||  |||||| ||| ||  |  ||||||  ||||||||||  ||||||||||||||    
T  41075891 tatatgtgtttagcctatgcaaataggggtcatttaaaaaatggtccttacatttcttgatcttagcatttttccctcccaaaatataatcatttaaaat 41075792  T
Q  294 ttggt 298  Q
    |||||    
T  41075791 ttggt 41075787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 327
Target Start/End: Original strand, 11857889 - 11858034
Alignment:
Q  186 tttggtttttatatgtgtttagtctctgtatatgg-ggtcatttaaaaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatc 284  Q
    ||||| |||||||||||||||||| ||| | || | |||||||||||||||| || ||  ||||||||||  || |||||||  || |||||| ||||||    
T  11857889 tttggcttttatatgtgtttagtccctgcaaatagaggtcatttaaaaaatggtccctgtattccttaatcctggcattttgctctgccaaaatttaatc 11857988  T
Q  285 atttaaaatttggtccc---ctctactcaatcactgtcacgtcact 327  Q
    | |||||| ||||||||    || ||| ||||||||||||||||||    
T  11857989 acttaaaaattggtccctcattccacttaatcactgtcacgtcact 11858034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 45680261 - 45680321
Alignment:
Q  56 atgaaaattaaatgaaagagagacaagtttcgccttcaaccacgtaaaggaaagaacctta 116  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||  | |||||||| |||||    
T  45680261 atgaaaatttaatggaagagagacaattttcgccttcaaccacacataggaaagagcctta 45680321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 298
Target Start/End: Original strand, 7280212 - 7280319
Alignment:
Q  192 ttttatatgtgtttagtctctgtatat-ggggtcatttaaaaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatcatttaa 290  Q
    |||||||| |||||||||  |||| || |||||||||||||||||| |||||  |||| |||||  || ||||||| |||  ||||| ||||||| ||||    
T  7280212 ttttatatatgtttagtccttgtaaataggggtcatttaaaaaatggtctctgtattctttaatcctgtcattttgccctgtcaaaatttaatcacttaa 7280311  T
Q  291 aatttggt 298  Q
    || |||||    
T  7280312 aaattggt 7280319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 354
Target Start/End: Original strand, 16605692 - 16605770
Alignment:
Q  278 attaatcatttaaaatttggtccc---ctctactcaatcactgtcacgtcactggattagctgacgtgacacattgactc 354  Q
    |||||||||||||||||| |||||   | | ||| |||||||| |||||||||  ||||||||||||| |||||||||||    
T  16605692 attaatcatttaaaatttcgtccctccccccacttaatcactgccacgtcacta-attagctgacgtggcacattgactc 16605770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 301
Target Start/End: Complemental strand, 26479353 - 26479240
Alignment:
Q  189 ggtttttatatgtgtttagtctctgtatat-ggggtcatttaaaaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatcatt 287  Q
    ||||||||||||||||||||| ||||| || |||||||||||||||||| |||||  | ||||||||  || ||   || |||||||||  ||||||| |    
T  26479353 ggtttttatatgtgtttagtccctgtaaataggggtcatttaaaaaatggtctctgtaatccttaatcgtggcaacctgccctcccaaagtttaatcact 26479254  T
Q  288 taaaatttggtccc 301  Q
    |||||||| |||||    
T  26479253 taaaattttgtccc 26479240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 294
Target Start/End: Original strand, 20704433 - 20704536
Alignment:
Q  192 ttttatatgtgtttagtctctgtatatggg-gtcatttaaaaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatcatttaa 290  Q
    |||||||||||||||||| ||| | ||  | ||||||||||||||| |  ||| ||||||||||  |||||||||| ||| |||||| ||||||| ||||    
T  20704433 ttttatatgtgtttagtccctgcaaataagagtcatttaaaaaatggttcctatattccttaatcttgacattttgccctgccaaaatttaatcacttaa 20704532  T
Q  291 aatt 294  Q
    ||||    
T  20704533 aatt 20704536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 301
Target Start/End: Complemental strand, 30381170 - 30381059
Alignment:
Q  191 tttttatatgtgtttagtctctgtatatggg-gtcatttaaaaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatcattta 289  Q
    |||||| ||||||||||||  |||| || || ||||||||||||||| ||  |  |||| |||||| || ||||||| ||| |||||| |||||||||||    
T  30381170 tttttacatgtgtttagtccttgtaaataggagtcatttaaaaaatggtccatgtattctttaattctggcattttgccctgccaaaatttaatcattta 30381071  T
Q  290 aaatttggtccc 301  Q
    ||| ||| ||||    
T  30381070 aaaattgatccc 30381059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 301
Target Start/End: Original strand, 44654620 - 44654729
Alignment:
Q  192 ttttatatgtgtttagtctctgtatat-ggggtcatttaaaaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatcatttaa 290  Q
    |||||||||||||||||| ||||| || |||||||||||||||||| ||  |  ||| |||||||  | |||||| ||||  ||||| ||||||| ||||    
T  44654620 ttttatatgtgtttagtccctgtaaataggggtcatttaaaaaatggtccatgtatttcttaattcaggcattttttcct-gcaaaatttaatcacttaa 44654718  T
Q  291 aatttggtccc 301  Q
    || ||||||||    
T  44654719 aaattggtccc 44654729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 299
Target Start/End: Original strand, 14633890 - 14633963
Alignment:
Q  226 tttaaaaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatcatttaaaatttggtc 299  Q
    ||||||||||| ||| |  |||| |||||  |||||||||||||| |||||| ||||||| |||||| ||||||    
T  14633890 tttaaaaaatggtctatgtattctttaatcctgacattttgtcctaccaaaatttaatcacttaaaaattggtc 14633963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 298
Target Start/End: Complemental strand, 6848 - 6746
Alignment:
Q  197 tatgtgtttagtctctgtatatggg-gtcatttaaaaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatcatttaaaattt 295  Q
    |||||||||||||| |||| ||  | || |||||||||||| |||||  |||  ||| || |||||||||  |||||||||| |||||||||||||||||    
T  6848 tatgtgtttagtctttgtaaataagagttatttaaaaaatggtctctgtatttattatttctgacattttaccctcccaaaatttaatcatttaaaattt 6749  T
Q  296 ggt 298  Q
    |||    
T  6748 ggt 6746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 301
Target Start/End: Complemental strand, 9496 - 9418
Alignment:
Q  223 tcatttaaaaaatgatctctacattccttaattatgacattttgtcctcccaaaaattaatcatttaaaatttggtccc 301  Q
    |||||||||||||| || ||| ||||||||||  ||  ||||||||||  ||||| ||||||| |||||| ||||||||    
T  9496 tcatttaaaaaatggtccctatattccttaatcctggtattttgtcctgtcaaaatttaatcacttaaaaattggtccc 9418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University