View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4137_low_2 (Length: 439)

Name: NF4137_low_2
Description: NF4137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4137_low_2
NF4137_low_2
[»] chr1 (20 HSPs)
chr1 (201-430)||(30528823-30529051)
chr1 (17-189)||(30529336-30529503)
chr1 (26-197)||(44920186-44920358)
chr1 (56-198)||(14758526-14758669)
chr1 (51-194)||(35508361-35508506)
chr1 (28-176)||(51681629-51681775)
chr1 (69-198)||(41649853-41649983)
chr1 (27-133)||(46729205-46729311)
chr1 (56-197)||(19547045-19547187)
chr1 (67-166)||(13792004-13792103)
chr1 (107-198)||(8462857-8462949)
chr1 (79-153)||(18032202-18032276)
chr1 (75-167)||(26533731-26533823)
chr1 (56-153)||(46895945-46896042)
chr1 (56-127)||(36564489-36564560)
chr1 (127-196)||(25670838-25670908)
chr1 (110-192)||(11411017-11411100)
chr1 (129-198)||(43492198-43492268)
chr1 (69-153)||(5250910-5250994)
chr1 (57-153)||(18038906-18039002)
[»] chr5 (13 HSPs)
chr5 (56-198)||(248457-248601)
chr5 (28-197)||(20125622-20125790)
chr5 (56-196)||(42877213-42877354)
chr5 (27-153)||(40944234-40944360)
chr5 (56-162)||(16980741-16980848)
chr5 (27-153)||(11010257-11010383)
chr5 (24-86)||(29558281-29558343)
chr5 (110-198)||(591274-591363)
chr5 (107-160)||(4857266-4857319)
chr5 (110-197)||(13978682-13978770)
chr5 (75-150)||(22528746-22528821)
chr5 (70-153)||(25437884-25437968)
chr5 (126-197)||(27146840-27146912)
[»] chr8 (15 HSPs)
chr8 (28-198)||(20142407-20142578)
chr8 (26-192)||(14237099-14237268)
chr8 (56-166)||(43238137-43238247)
chr8 (57-166)||(33285922-33286031)
chr8 (56-167)||(14855580-14855691)
chr8 (58-166)||(23984254-23984362)
chr8 (57-199)||(44042503-44042646)
chr8 (57-153)||(10565358-10565454)
chr8 (58-154)||(40464406-40464502)
chr8 (57-202)||(4166458-4166604)
chr8 (56-142)||(6904192-6904278)
chr8 (106-149)||(39312202-39312245)
chr8 (92-153)||(37564364-37564425)
chr8 (110-198)||(44254177-44254266)
chr8 (69-153)||(31265010-31265094)
[»] chr7 (10 HSPs)
chr7 (28-198)||(44319823-44319994)
chr7 (27-166)||(26202-26340)
chr7 (56-166)||(6771837-6771947)
chr7 (56-166)||(5495969-5496076)
chr7 (66-198)||(6775198-6775331)
chr7 (71-166)||(41898254-41898349)
chr7 (56-200)||(3298184-3298328)
chr7 (110-198)||(5248683-5248772)
chr7 (56-96)||(31902745-31902785)
chr7 (110-206)||(6388003-6388100)
[»] chr2 (9 HSPs)
chr2 (27-166)||(32438049-32438188)
chr2 (56-166)||(33962939-33963049)
chr2 (64-192)||(37597460-37597590)
chr2 (59-164)||(18734354-18734459)
chr2 (55-126)||(7933334-7933405)
chr2 (70-153)||(18684375-18684458)
chr2 (92-166)||(9153506-9153580)
chr2 (79-153)||(32859798-32859872)
chr2 (56-153)||(32770766-32770863)
[»] scaffold0027 (1 HSPs)
scaffold0027 (27-176)||(122432-122582)
[»] chr4 (16 HSPs)
chr4 (27-166)||(38380458-38380597)
chr4 (89-195)||(31655473-31655580)
chr4 (27-166)||(38949026-38949165)
chr4 (60-199)||(32892977-32893117)
chr4 (64-166)||(39804890-39804993)
chr4 (80-154)||(23133068-23133142)
chr4 (115-197)||(50131028-50131113)
chr4 (64-125)||(34469571-34469632)
chr4 (57-155)||(7388786-7388884)
chr4 (100-197)||(28695734-28695832)
chr4 (57-142)||(49011880-49011965)
chr4 (56-139)||(55855175-55855255)
chr4 (92-192)||(40071282-40071383)
chr4 (70-153)||(2063488-2063571)
chr4 (178-206)||(36702758-36702786)
chr4 (93-153)||(48097965-48098025)
[»] chr3 (15 HSPs)
chr3 (57-195)||(3973783-3973922)
chr3 (57-195)||(3995955-3996094)
chr3 (27-167)||(49682166-49682306)
chr3 (57-195)||(4009483-4009622)
chr3 (28-197)||(21813124-21813290)
chr3 (89-166)||(31294370-31294447)
chr3 (63-164)||(32606385-32606486)
chr3 (56-153)||(39144981-39145077)
chr3 (56-153)||(29212713-29212810)
chr3 (79-167)||(29484855-29484943)
chr3 (64-174)||(34285341-34285448)
chr3 (79-166)||(36494175-36494263)
chr3 (69-153)||(54290786-54290870)
chr3 (128-192)||(32734654-32734719)
chr3 (70-143)||(43803992-43804065)
[»] scaffold0633 (1 HSPs)
scaffold0633 (69-198)||(5013-5143)
[»] chr6 (4 HSPs)
chr6 (56-166)||(29988325-29988433)
chr6 (127-201)||(29407967-29408042)
chr6 (25-153)||(10570907-10571035)
chr6 (27-118)||(34530349-34530440)
[»] scaffold0172 (1 HSPs)
scaffold0172 (79-194)||(13436-13552)
[»] scaffold0036 (1 HSPs)
scaffold0036 (138-166)||(21301-21329)


Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 201 - 430
Target Start/End: Complemental strand, 30529051 - 30528823
Alignment:
Q  201 taataactatcaccaatacatggataagaatgtcttagaaagagatacatcagcagagaaacaaaatcattacacatcaactttgtgctttagtgttaaa 300  Q
    |||||||||| || |||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30529051 taataactatgactaatacaaggataagaatgtcctagaaa-agatacatcagcagagaaacaaaatcattacacatcaactttatgctttagtgttaaa 30528953  T
Q  301 tcattaaaccctaatccaatccaaatgcagtcttcattcaatactagtatctcataacggttcattattgactaaattaaattttgcaactaaacacagc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30528952 tcattaaaccctaatccaatccaaatgcagtcttcattcaatactagtatctcataacggttcattattgactaaattaaattttgcaactaaacacagc 30528853  T
Q  401 aaatttgcaaccatatgtatatagaattat 430  Q
    |||||||||||||||||||||||| |||||    
T  30528852 aaatttgcaaccatatgtatatagcattat 30528823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 30529503 - 30529336
Alignment:
Q  17 aataataaaagaaatgttaacgaatgtccttaaggcatactttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaatt 116  Q
    |||||||| | |||||||||||| ||   ||||| ||| |||||||||||||||||| ||||||||||||| |||||||||||||||| |||| ||||||    
T  30529503 aataataagataaatgttaacgagtgcttttaagacattctttaaggactttaaatagtaaatttttatggaaaattgtgcatttaatgcatcagaaatt 30529404  T
Q  117 gaagtgttaaactttttcaaagaataatttcttaattggaaaaccttaaaagtgcccttaaagcactcgttaa 189  Q
    ||||||||||| |||||||||||||||||||||||||| |||||      |||||||||| ||||||||||||    
T  30529403 gaagtgttaaattttttcaaagaataatttcttaattgaaaaac-----gagtgcccttagagcactcgttaa 30529336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 26 - 197
Target Start/End: Complemental strand, 44920358 - 44920186
Alignment:
Q  26 agaaatgttaacgaatgtccttaaggcatactttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgtta 125  Q
    |||||||||||||| || ||| | ||||   ||||||||||| ||||| ||||||||||||| |||||||||||| ||| ||||  ||||||||||||||    
T  44920358 agaaatgttaacgagtgccctaagggcactttttaaggacttgaaatagtaaatttttatggaaaattgtgcattcaatgcatcataaattgaagtgtta 44920259  T
Q  126 aactttttcaaagaataatttcttaattggaaaaccttaaa-agtgcccttaaagcactcgttaacaagaccc 197  Q
    |||||||| || |||||||||||||||||  |||||||||| | |||||||||| ||||||||||||||||||    
T  44920258 aacttttttaatgaataatttcttaattgagaaaccttaaagaatgcccttaaaacactcgttaacaagaccc 44920186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 56 - 198
Target Start/End: Complemental strand, 14758669 - 14758526
Alignment:
Q  56 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattgg 155  Q
    |||||||||||||||||| ||||||||||||  |||||||||||| ||| ||||| |||||||| ||||||||||||| || ||||||||||||||||||    
T  14758669 ctttaaggactttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgg 14758570  T
Q  156 aaaaccttaaa-agtgcccttaaagcactcgttaacaagaccct 198  Q
    ||||| ||||| ||||||||||   |||||||||||||||||||    
T  14758569 aaaactttaaagagtgcccttaggacactcgttaacaagaccct 14758526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 51 - 194
Target Start/End: Complemental strand, 35508506 - 35508361
Alignment:
Q  51 gcatactttaaggactttaaataataaatttttatgggaaattgtgcatttaa-tacatcggaaattgaagtgttaaactttttcaaagaataatttctt 149  Q
    |||| |||||| |||||||||||||||||||||||| |||||||| ||||||| | ||| |||||||||||||||||| |||||||||||||||||||||    
T  35508506 gcattctttaaagactttaaataataaatttttatgagaaattgtacatttaaatgcattggaaattgaagtgttaaattttttcaaagaataatttctt 35508407  T
Q  150 aattggaaaaccttaaa-agtgcccttaaagcactcgttaacaaga 194  Q
    |||||  ||||| |||| |||| | | |  ||||||||||||||||    
T  35508406 aattgagaaaccataaagagtgtcatcagggcactcgttaacaaga 35508361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 51681775 - 51681629
Alignment:
Q  28 aaatgttaacgaatgtccttaaggcatactttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaa 127  Q
    |||||||||||| ||| || ||||||   |||||| ||| ||||||||||||||  |||| ||||||| |||| ||| || |||||||| ||||||||||    
T  51681775 aaatgttaacgagtgttct-aaggcactttttaagaactctaaataataaattt--atggaaaattgtacattcaatgcaccggaaattaaagtgttaaa 51681679  T
Q  128 ctttttcaaagaataatttcttaattggaaaaccttaaa-agtgccctta 176  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  51681678 ctttttcaaagaataatttcttaattgggaaaccttaaagagtgccctta 51681629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 69 - 198
Target Start/End: Complemental strand, 41649983 - 41649853
Alignment:
Q  69 aaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattggaaaacctt-aaaa 167  Q
    ||||| ||||||||||||| ||||| |||||| ||| ||| |||||||||| ||||||||||||| || ||||||||| |||||||| ||||||| ||||    
T  41649983 aaatagtaaatttttatggaaaattatgcattcaatgcatgggaaattgaaatgttaaacttttttaaggaataattttttaattgggaaaccttaaaaa 41649884  T
Q  168 gtgcccttaaagcactcgttaacaagaccct 198  Q
    |||  ||||| ||||| ||||||||||||||    
T  41649883 gtgttcttaaggcacttgttaacaagaccct 41649853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 46729311 - 46729205
Alignment:
Q  27 gaaatgttaacgaatgtccttaaggcatactttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaa 126  Q
    ||||| ||||||| || ||| ||||||  |||||||||||||||||| ||||||||||||| |||||||||||| ||| |||||||| ||||||||||||    
T  46729311 gaaatattaacgagtgccctaaaggcactctttaaggactttaaatagtaaatttttatggaaaattgtgcattcaatgcatcggaatttgaagtgttaa 46729212  T
Q  127 acttttt 133  Q
     ||||||    
T  46729211 tcttttt 46729205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 56 - 197
Target Start/End: Original strand, 19547045 - 19547187
Alignment:
Q  56 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattgg 155  Q
    |||||||||||||| ||| ||| ||||||| | || ||||||||| ||| |||||| ||||||||| ||  || ||||||| ||||||||||||| ||||    
T  19547045 ctttaaggactttatatagtaagtttttatagaaacttgtgcattcaatgcatcgggaattgaagtattggacattttcaatgaataatttcttacttgg 19547144  T
Q  156 aaaaccttaaa-agtgcccttaaagcactcgttaacaagaccc 197  Q
     || ||||||| | ||||||||  |||||||||| ||||||||    
T  19547145 gaatccttaaagaatgcccttagggcactcgttagcaagaccc 19547187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 67 - 166
Target Start/End: Original strand, 13792004 - 13792103
Alignment:
Q  67 ttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattggaaaaccttaaa 166  Q
    ||||||| |||||||||||  ||||||||||||| ||| ||||   ||||||||||||||||||||| ||| |||||||| ||||||  |||||||||||    
T  13792004 ttaaatagtaaatttttataagaaattgtgcattaaatgcatcaataattgaagtgttaaactttttaaaaaaataattttttaattaaaaaaccttaaa 13792103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 107 - 198
Target Start/End: Complemental strand, 8462949 - 8462857
Alignment:
Q  107 atcggaaattgaagtgttaaactttttcaaagaataatttcttaattggaaaaccttaaa-agtgcccttaaagcactcgttaacaagaccct 198  Q
    ||||||||||||||||||||||||||||||| |||||||| ||| ||| |||| |||||| ||||| || ||  ||||||||||| |||||||    
T  8462949 atcggaaattgaagtgttaaactttttcaaataataattttttagttgaaaaatcttaaagagtgctctaaagacactcgttaacgagaccct 8462857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 79 - 153
Target Start/End: Complemental strand, 18032276 - 18032202
Alignment:
Q  79 tttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaatt 153  Q
    ||||||||| || || |||||||||| |||||||||||||||  ||||||||||||||  |||||||||||||||    
T  18032276 tttttatggaaacttatgcatttaatgcatcggaaattgaagcattaaactttttcaataaataatttcttaatt 18032202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 75 - 167
Target Start/End: Original strand, 26533731 - 26533823
Alignment:
Q  75 taaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattggaaaaccttaaaa 167  Q
    ||||||||||||| || |||||||||||| ||| |||||||||||  |||| ||||||||||   |||||||||||||||  || ||||||||    
T  26533731 taaatttttatggaaacttgtgcatttaaaacagcggaaattgaaacgttagactttttcaattgataatttcttaattgagaatccttaaaa 26533823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 46896042 - 46895945
Alignment:
Q  56 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaatt 153  Q
    ||||| |||||||| ||| ||| ||||||| | || || |||||| ||| |||||||||||||| | ||| ||||||||||  |||||||||||||||    
T  46896042 ctttacggactttagatagtaagtttttatagaaatttatgcattcaatgcatcggaaattgaaatattagactttttcaataaataatttcttaatt 46895945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 127
Target Start/End: Original strand, 36564489 - 36564560
Alignment:
Q  56 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaa 127  Q
    |||||||||||||||||| |||| |||||||  |||||||||||| ||| | |  |||||||||||||||||    
T  36564489 ctttaaggactttaaatagtaaaattttatgaaaaattgtgcattcaatgctttagaaattgaagtgttaaa 36564560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 25670838 - 25670908
Alignment:
Q  127 actttttcaaagaataatttcttaattggaaaaccttaaaa-gtgcccttaaagcactcgttaacaagacc 196  Q
    ||||||| ||||||||||||||| ||| |||| |||||||| |||| ||||  ||||||||||||||||||    
T  25670838 acttttttaaagaataatttctttattagaaatccttaaaaggtgctcttagggcactcgttaacaagacc 25670908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 11411017 - 11411100
Alignment:
Q  110 ggaaattgaagtgttaaactttttcaaagaataatttcttaattggaaaaccttaaa-agtgcccttaaagcactcgttaacaa 192  Q
    ||||||| |||| || ||||||||||| |||||||||||||||  |||| ||||||| |||| |||||   |||||||||||||    
T  11411017 ggaaattaaagtattgaactttttcaatgaataatttcttaatgagaaatccttaaagagtgtccttaggacactcgttaacaa 11411100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 43492198 - 43492268
Alignment:
Q  129 tttttcaaagaataatttcttaattggaaaaccttaaa-agtgcccttaaagcactcgttaacaagaccct 198  Q
    ||||| ||| ||||||||||| ||| | || ||||||| ||||||||||  ||||||||||||||||||||    
T  43492198 ttttttaaaaaataatttctttattaggaatccttaaagagtgcccttagggcactcgttaacaagaccct 43492268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 153
Target Start/End: Original strand, 5250910 - 5250994
Alignment:
Q  69 aaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaatt 153  Q
    ||||||||| ||||||||  || ||||| ||||||||||| | ||||| || ||||  ||||||| ||||||||| ||| |||||    
T  5250910 aaataataattttttatgaaaatttgtgtatttaatacattgaaaattaaactgtttgacttttttaaagaataacttcctaatt 5250994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 153
Target Start/End: Complemental strand, 18039002 - 18038906
Alignment:
Q  57 tttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaatt 153  Q
    ||||| ||||||| ||||||| ||||||||  || ||||| ||| ||| |||||||||||||||  ||| | |||||||| | ||  ||||||||||    
T  18039002 tttaaagactttagataataattttttatgaaaatttgtgtattcaatgcatcggaaattgaagcattagattttttcaatgcattgtttcttaatt 18038906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 56 - 198
Target Start/End: Original strand, 248457 - 248601
Alignment:
Q  56 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaag-aataatttcttaattg 154  Q
    |||||||||||| ||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  248457 ctttaaggacttgaaatagtaaatttttatggaaaattgtgcattcaatacatcggaaattgaagtgttaaacttttttaaagaaataatttcttaattg 248556  T
Q  155 gaaaaccttaaa-agtgcccttaaagcactcgttaacaagaccct 198  Q
      |||||||||| |||||||||||  |||||||||||||||||||    
T  248557 agaaaccttaaagagtgcccttaagacactcgttaacaagaccct 248601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 28 - 197
Target Start/End: Original strand, 20125622 - 20125790
Alignment:
Q  28 aaatgttaacgaatgtccttaaggcatactttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaa 127  Q
    |||||| ||||| || |||||||| ||  ||||||||||||||||| ||||||||||||  |||||||||||||| | ||||| ||||||||||||||||    
T  20125622 aaatgtcaacgagtgaccttaaggaattttttaaggactttaaatagtaaatttttatgaaaaattgtgcatttagtgcatcgaaaattgaagtgttaaa 20125721  T
Q  128 ctttttcaaagaataatttcttaattggaaaaccttaaaagtgcccttaaagcactcgttaacaagaccc 197  Q
    |||||| ||||||||| |||||||||| ||||| ||||||||||| ||||  ||||||||||||||||||    
T  20125722 cttttttaaagaataa-ttcttaattgaaaaactttaaaagtgcctttaagacactcgttaacaagaccc 20125790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 56 - 196
Target Start/End: Complemental strand, 42877354 - 42877213
Alignment:
Q  56 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattgg 155  Q
    |||||| ||||||||||| ||||||||||||| |||||||| ||| ||||||| | |||||||| | |||||||||||  | ||||||||||| |||||     
T  42877354 ctttaaagactttaaatagtaaatttttatggaaaattgtgtattcaatacattgaaaattgaaattttaaacttttttcatgaataatttctcaattga 42877255  T
Q  156 aaaaccttaaa-agtgcccttaaagcactcgttaacaagacc 196  Q
     |||| ||||| |||| ||||| | ||||||||| |||||||    
T  42877254 gaaactttaaagagtgtccttagaacactcgttagcaagacc 42877213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 27 - 153
Target Start/End: Original strand, 40944234 - 40944360
Alignment:
Q  27 gaaatgttaacgaatgtccttaaggcatactttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaa 126  Q
    ||||||||||||| ||| |||| | || |||||||  |||||| ||| ||||||||||||| || |||| |||| ||| ||||| |||||||||  |||     
T  40944234 gaaatgttaacgagtgttcttatgacacactttaaatactttagatagtaaatttttatggaaatttgtacattcaatgcatcgaaaattgaagcattat 40944333  T
Q  127 actttttcaaagaataatttcttaatt 153  Q
    |||||||||| ||||||||||||||||    
T  40944334 actttttcaatgaataatttcttaatt 40944360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 56 - 162
Target Start/End: Complemental strand, 16980848 - 16980741
Alignment:
Q  56 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttc-aaagaataatttcttaattg 154  Q
    |||||| ||||||||||| || |||||||||  ||||| | |||| |||  ||||||||||||||||||||||||| || ||||||||||||||||| ||    
T  16980848 ctttaaagactttaaatagtacatttttatgaaaaattatacattcaatgtatcggaaattgaagtgttaaactttctcaaaagaataatttcttaaatg 16980749  T
Q  155 gaaaacct 162  Q
     |||||||    
T  16980748 taaaacct 16980741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 27 - 153
Target Start/End: Complemental strand, 11010383 - 11010257
Alignment:
Q  27 gaaatgttaacgaatgtccttaaggcatactttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaa 126  Q
    |||||| |||||| || ||| | |||||  ||||||||||| | ||| ||  ||||||||| || ||||| ||| ||| |||| ||||||||||| |||     
T  11010383 gaaatgctaacgagtggcctaagggcattttttaaggacttcagatagtatgtttttatggaaagttgtgtattcaatgcatcagaaattgaagtattag 11010284  T
Q  127 actttttcaaagaataatttcttaatt 153  Q
    |||||||||| ||||| ||||||||||    
T  11010283 actttttcaatgaatagtttcttaatt 11010257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 29558343 - 29558281
Alignment:
Q  24 aaagaaatgttaacgaatgtccttaaggcatactttaaggactttaaataataaatttttatg 86  Q
    |||||||||||||||||||  || ||| ||| ||||||||||||| |||||||||||||||||    
T  29558343 aaagaaatgttaacgaatgctctaaagacattctttaaggacttttaataataaatttttatg 29558281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 591274 - 591363
Alignment:
Q  110 ggaaattgaagtgttaaactttttcaaagaataatttcttaattggaaaaccttaaa-agtgcccttaaagcactcgttaacaagaccct 198  Q
    |||||||||||| ||  ||||||| ||||||||||||||| ||| |||| ||||||| |||| | |||  ||||||||||||||||||||    
T  591274 ggaaattgaagttttcgacttttttaaagaataatttctttattagaaatccttaaagagtgtctttagggcactcgttaacaagaccct 591363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 4857319 - 4857266
Alignment:
Q  107 atcggaaattgaagtgttaaactttttcaaagaataatttcttaattggaaaac 160  Q
    |||| ||||| || |||||||||||||||||||||||||||||||||| |||||    
T  4857319 atcgaaaattaaaatgttaaactttttcaaagaataatttcttaattgaaaaac 4857266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 197
Target Start/End: Original strand, 13978682 - 13978770
Alignment:
Q  110 ggaaattgaagtgttaaactttttcaaagaataatttcttaattggaaaacctt-aaaagtgcccttaaagcactcgttaacaagaccc 197  Q
    |||||||||||| || |||||||| ||  ||||||||||| |||||||| |||| ||||||||| |||   ||||||||||||||||||    
T  13978682 ggaaattgaagtttttaacttttttaagaaataatttctttattggaaatccttaaaaagtgcctttaggacactcgttaacaagaccc 13978770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 150
Target Start/End: Original strand, 22528746 - 22528821
Alignment:
Q  75 taaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttctta 150  Q
    ||||||||||||  || || || |||||||  ||||||||||||||  | |||||||||||| |||||||||||||    
T  22528746 taaatttttatgaaaatttatgtatttaatgtatcggaaattgaagcatcaaactttttcaatgaataatttctta 22528821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 153
Target Start/End: Original strand, 25437884 - 25437968
Alignment:
Q  70 aataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaac-tttttcaaagaataatttcttaatt 153  Q
    |||| ||| ||||||||  || ||||| ||||||||||| |||||||||| ||||  || ||||| ||||||||| |||||||||    
T  25437884 aatagtaactttttatgaaaacttgtgtatttaatacattggaaattgaactgtttcactttttttaaagaataacttcttaatt 25437968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 27146912 - 27146840
Alignment:
Q  126 aactttttcaaagaataatttcttaattggaaaaccttaaa-agtgcccttaaagcactcgttaacaagaccc 197  Q
    |||||||| ||||||||||||||| ||| |||| ||||||| |||||| |||  | |||||||||||| ||||    
T  27146912 aacttttttaaagaataatttctttattagaaatccttaaagagtgcctttaggggactcgttaacaaaaccc 27146840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 28 - 198
Target Start/End: Original strand, 20142407 - 20142578
Alignment:
Q  28 aaatgttaacgaatgtccttaaggcatactttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaa 127  Q
    |||||||||||| | | ||||  ||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||    
T  20142407 aaatgttaacgagtattcttagagcattatttaaggactttaaataataaatttttatgggaaattgtgcatttaatgcatcgaaaattaaagtgttaaa 20142506  T
Q  128 ctttttcaaagaataatttcttaattggaaaaccttaaa-agtgcccttaaagcactcgttaacaagaccct 198  Q
    |||||| ||| |||||||||||||||| || |||||||| |||| |||||   |||||||||||||||||||    
T  20142507 ctttttaaaaaaataatttcttaattgaaataccttaaagagtgtccttaggacactcgttaacaagaccct 20142578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 26 - 192
Target Start/End: Complemental strand, 14237268 - 14237099
Alignment:
Q  26 agaaatgttaacgaatgtccttaaggcatactttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgtta 125  Q
    |||||| ||||||| || |||||  |||| |||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  14237268 agaaatattaacgagtgcccttagagcattctttaaggactttaaatagtaaatttttatggaaaattgtgcatttaatgcatcggaaattgaagtgtta 14237169  T
Q  126 aactttttcaaagaataatttcttaattggaaaaccttaaa---agtgcccttaaagcactcgttaacaa 192  Q
    |||||||  |  ||||||||| ||||||| |||| ||||||   |||||||| |  ||||||||||||||    
T  14237168 aacttttatatggaataattttttaattgaaaaatcttaaagagagtgccctaagggcactcgttaacaa 14237099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 56 - 166
Target Start/End: Original strand, 43238137 - 43238247
Alignment:
Q  56 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattgg 155  Q
    ||||||| |||||||||| ||||||||||||| ||||| | |||||||| ||||| |||||||||||||||||||||| || |||||||||||||||||     
T  43238137 ctttaagaactttaaatagtaaatttttatggaaaattctacatttaatgcatcgaaaattgaagtgttaaacttttttaaggaataatttcttaattga 43238236  T
Q  156 aaaaccttaaa 166  Q
    |||||||||||    
T  43238237 aaaaccttaaa 43238247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 57 - 166
Target Start/End: Original strand, 33285922 - 33286031
Alignment:
Q  57 tttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattgga 156  Q
    ||||||||||||||||| ||||||||||||  |||||||| ||||||||||||| |||||||| ||||||| ||||||||| ||||||||||||||||      
T  33285922 tttaaggactttaaatagtaaatttttatgaaaaattgtgtatttaatacatcgaaaattgaaatgttaaattttttcaaaaaataatttcttaattgat 33286021  T
Q  157 aaaccttaaa 166  Q
    ||||||||||    
T  33286022 aaaccttaaa 33286031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 56 - 167
Target Start/End: Original strand, 14855580 - 14855691
Alignment:
Q  56 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattgg 155  Q
    |||||| ||||||||||||||||||||||||  ||| ||| ||||| || ||||| ||||||||||||||||||||||||||||||||||| ||||| ||    
T  14855580 ctttaaagactttaaataataaatttttatgaaaaagtgtccatttgatgcatcgtaaattgaagtgttaaactttttcaaagaataattttttaatagg 14855679  T
Q  156 aaaaccttaaaa 167  Q
     |||||||||||    
T  14855680 gaaaccttaaaa 14855691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 58 - 166
Target Start/End: Complemental strand, 23984362 - 23984254
Alignment:
Q  58 ttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattggaa 157  Q
    ||||||| |||||||| ||||||||||||  ||||||||| || | |  |||  ||||||| |||||||||||||| |||||||||||||||||||| ||    
T  23984362 ttaaggattttaaatagtaaatttttatgaaaaattgtgctttcagtgtatcaaaaattgaggtgttaaacttttttaaagaataatttcttaattgaaa 23984263  T
Q  158 aaccttaaa 166  Q
    ||| |||||    
T  23984262 aactttaaa 23984254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 57 - 199
Target Start/End: Complemental strand, 44042646 - 44042503
Alignment:
Q  57 tttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattgga 156  Q
    ||||| || |||||||| ||| ||||||| | || ||||||||| ||| ||| |||||||||||| || ||||||||||| ||||| ||||||||||       
T  44042646 tttaaagattttaaatagtaagtttttatagaaatttgtgcattcaatgcattggaaattgaagtattgaactttttcaatgaatagtttcttaattatg 44042547  T
Q  157 aaaccttaaa-agtgcccttaaagcactcgttaacaagacccta 199  Q
    || ||||||| |||| |||||  |||||||||||||| ||||||    
T  44042546 aatccttaaagagtgtccttagggcactcgttaacaaaacccta 44042503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 57 - 153
Target Start/End: Complemental strand, 10565454 - 10565358
Alignment:
Q  57 tttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaatt 153  Q
    ||||| ||||||| ||| ||||||||||||| || ||||||||| ||||||||  ||||| |||| ||| |||||||||| ||||| ||||||||||    
T  10565454 tttaaagactttagatagtaaatttttatggaaatttgtgcattcaatacatcaaaaattaaagtattagactttttcaatgaatagtttcttaatt 10565358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 40464406 - 40464502
Alignment:
Q  58 ttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattg 154  Q
    ||||||||||| |||| ||||||||||||| || ||||||||| || |||||| |||||||| | |||||| ||||||| ||||| ||| |||||||    
T  40464406 ttaaggactttgaatagtaaatttttatggtaacttgtgcattcaaaacatcgaaaattgaaatattaaacattttcaatgaatagttttttaattg 40464502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 57 - 202
Target Start/End: Complemental strand, 4166604 - 4166458
Alignment:
Q  57 tttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattgga 156  Q
    ||||| ||||||| |||  || ||||||||| || ||||||||| |||  || |||||||||| | || ||||||||||| |||||||||||| |||       
T  4166604 tttaaagactttagatataaagtttttatggaaacttgtgcattcaatgtattggaaattgaaatattgaactttttcaatgaataatttcttgattatg 4166505  T
Q  157 aaaccttaaa-agtgcccttaaagcactcgttaacaagaccctaata 202  Q
    || ||||||| ||||||||||    |||||||||||| |||||||||    
T  4166504 aatccttaaagagtgcccttaggaaactcgttaacaaaaccctaata 4166458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 56 - 142
Target Start/End: Complemental strand, 6904278 - 6904192
Alignment:
Q  56 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaata 142  Q
    |||||| ||||||| ||| ||| ||||||||| || |||||| || ||| |||||||||||||||  |||||||||||||| |||||    
T  6904278 ctttaaagactttagatagtaattttttatggaaacttgtgcgttcaatgcatcggaaattgaagcattaaactttttcaatgaata 6904192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 149
Target Start/End: Original strand, 39312202 - 39312245
Alignment:
Q  106 catcggaaattgaagtgttaaactttttcaaagaataatttctt 149  Q
    |||||||||||||||| |||||||||||||| ||||||||||||    
T  39312202 catcggaaattgaagtattaaactttttcaatgaataatttctt 39312245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 153
Target Start/End: Original strand, 37564364 - 37564425
Alignment:
Q  92 ttgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaatt 153  Q
    ||||| ||||||||||| |||||||||| | ||  ||||||| |||||||||||||||||||    
T  37564364 ttgtgtatttaatacattggaaattgaactatttgacttttttaaagaataatttcttaatt 37564425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 44254177 - 44254266
Alignment:
Q  110 ggaaattgaagtgttaaactttttcaaagaataatttcttaattggaaaaccttaaa-agtgcccttaaagcactcgttaacaagaccct 198  Q
    |||||||||||| ||  ||||||| || ||| |||||||| ||| |||| ||||||| ||||||||||   |||||||||||||||||||    
T  44254177 ggaaattgaagtttttgacttttttaaggaagaatttctttattagaaatccttaaagagtgcccttaggacactcgttaacaagaccct 44254266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 153
Target Start/End: Complemental strand, 31265094 - 31265010
Alignment:
Q  69 aaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaatt 153  Q
    ||||| ||| ||||||||  || ||||| ||||||||||| |||||||||| ||||  ||||||| ||||||||| ||| |||||    
T  31265094 aaatagtaactttttatgaaaacttgtgtatttaatacattggaaattgaattgtttgacttttttaaagaataacttcctaatt 31265010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 28 - 198
Target Start/End: Original strand, 44319823 - 44319994
Alignment:
Q  28 aaatgttaacgaatgtccttaaggcatactttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaa 127  Q
    |||||||||||| | | ||||  ||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||    
T  44319823 aaatgttaacgagtattcttagagcattatttaaggactttaaataataaatttttatgggaaattgtgcatttaatgcatcgaaaattaaagtgttaaa 44319922  T
Q  128 ctttttcaaagaataatttcttaattggaaaaccttaaa-agtgcccttaaagcactcgttaacaagaccct 198  Q
    |||||| ||| |||||||||||||||| || |||||||| |||| |||||   |||||||||||||||||||    
T  44319923 ctttttaaaaaaataatttcttaattgaaataccttaaagagtgtccttaggacactcgttaacaagaccct 44319994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 27 - 166
Target Start/End: Complemental strand, 26340 - 26202
Alignment:
Q  27 gaaatgttaacgaatgtccttaaggcatactttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaa 126  Q
    ||||| ||||||| |||||||| | ||| ||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||    
T  26340 gaaatattaacgagtgtccttaggacattctttaagaactttaaataataaatttttatgggaaattgtacatttaatgcatcgaaaattaaagtgttaa 26241  T
Q  127 actttttcaaagaataatttcttaattggaaaaccttaaa 166  Q
    |||||| |||||||||||||||||||| ||||||||||||    
T  26240 acttttgcaaagaataatttcttaatt-gaaaaccttaaa 26202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 56 - 166
Target Start/End: Complemental strand, 6771947 - 6771837
Alignment:
Q  56 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattgg 155  Q
    |||||||||||||||||| ||||||||||||| |||||||||||| |||| ||||||||||||| || | |  ||||||||||||||||||||||||||     
T  6771947 ctttaaggactttaaatagtaaatttttatggaaaattgtgcattcaatatatcggaaattgaaatggtgagttttttcaaagaataatttcttaattga 6771848  T
Q  156 aaaaccttaaa 166  Q
     ||||||||||    
T  6771847 gaaaccttaaa 6771837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 56 - 166
Target Start/End: Original strand, 5495969 - 5496076
Alignment:
Q  56 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattgg 155  Q
    ||||||||||||| |||| |||   ||||||| || ||||||||| ||| ||||| ||||| ||||||||||| ||||||| |||||||||||||||||     
T  5495969 ctttaaggactttgaatagtaa---tttatggaaagttgtgcattcaatgcatcgaaaattaaagtgttaaacattttcaaggaataatttcttaattga 5496065  T
Q  156 aaaaccttaaa 166  Q
     ||||||||||    
T  5496066 gaaaccttaaa 5496076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 66 - 198
Target Start/End: Complemental strand, 6775331 - 6775198
Alignment:
Q  66 tttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattggaaaaccttaa 165  Q
    |||||||| ||||| ||||||| |||||||||||| ||| ||||||||||| || |  | |  |||||||||||||||||| |||||||  |||||||||    
T  6775331 tttaaatagtaaatatttatggaaaattgtgcattcaatgcatcggaaattcaaatagtgagatttttcaaagaataatttattaattgagaaaccttaa 6775232  T
Q  166 a-agtgcccttaaagcactcgttaacaagaccct 198  Q
    | |||||||| |   ||||| |||||||||||||    
T  6775231 agagtgccctaaggacactccttaacaagaccct 6775198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 41898349 - 41898254
Alignment:
Q  71 ataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattggaaaaccttaaa 166  Q
    |||||||||| |||||| || |||| |||||||| |||||||||||||| | || ||||||||||| ||| | ||||||||||| ||| |||||||    
T  41898349 ataataaattgttatggaaacttgtacatttaatgcatcggaaattgaattattgaactttttcaatgaaaagtttcttaattgaaaatccttaaa 41898254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 56 - 200
Target Start/End: Complemental strand, 3298328 - 3298184
Alignment:
Q  56 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattgg 155  Q
    ||||||| |||||| ||  ||||||||||||| || ||  ||||| ||| |||| ||||||||| | | || ||||||||| ||||| |||||||||| |    
T  3298328 ctttaagaactttagatgttaaatttttatggaaacttaagcattcaatgcatcagaaattgaaatatgaagctttttcaatgaatagtttcttaatt-g 3298230  T
Q  156 aaaaccttaaa-agtgcccttaaagcactcgttaacaagaccctaa 200  Q
    |  | |||||| ||||||||||| | |||||||| |||||||||||    
T  3298229 agtatcttaaagagtgcccttaaggtactcgttagcaagaccctaa 3298184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 5248683 - 5248772
Alignment:
Q  110 ggaaattgaagtgttaaactttttcaaagaataatttcttaattggaaaaccttaaa-agtgcccttaaagcactcgttaacaagaccct 198  Q
    |||||||| ||| || ||| |||| ||||||||||||||| ||| | || ||||||| ||||||||||| |  |||||||||||||||||    
T  5248683 ggaaattggagtttttaacatttttaaagaataatttctttattaggaatccttaaagagtgcccttaaggggctcgttaacaagaccct 5248772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 31902745 - 31902785
Alignment:
Q  56 ctttaaggactttaaataataaatttttatgggaaattgtg 96  Q
    |||||||||||||||||| ||||||||||||| ||||||||    
T  31902745 ctttaaggactttaaatagtaaatttttatggaaaattgtg 31902785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 206
Target Start/End: Original strand, 6388003 - 6388100
Alignment:
Q  110 ggaaattgaagtgttaaactttttcaaagaataatttcttaattggaaaaccttaaa-agtgcccttaaagcactcgttaacaagaccctaataataa 206  Q
    |||||||||||| ||  ||||||| ||||||||||||||| |||   || ||||||| |||| | | || ||||| |||||||||||||||| |||||    
T  6388003 ggaaattgaagtttttgacttttttaaagaataatttctttattatgaatccttaaagagtgtcttaaaggcacttgttaacaagaccctaaaaataa 6388100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 27 - 166
Target Start/End: Original strand, 32438049 - 32438188
Alignment:
Q  27 gaaatgttaacgaatgtccttaaggcatactttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaa 126  Q
    ||||| ||||||| ||  ||||| |||| |||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  32438049 gaaatattaacgagtgctcttaatgcattctttaaggactttaaatagtaaatttttatggaaaattgtgcatttaatgcatcggaaattgaagtgttaa 32438148  T
Q  127 actttttcaaagaataatttcttaattggaaaaccttaaa 166  Q
    || |||||||| |||||||| |||||||||||||||||||    
T  32438149 accttttcaaataataattttttaattggaaaaccttaaa 32438188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 56 - 166
Target Start/End: Original strand, 33962939 - 33963049
Alignment:
Q  56 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattgg 155  Q
    |||||||||||||||||||||||||||||||  |||||||||||| ||| ||| | |||||||||||||||||||||| |||||||||||||||||||||    
T  33962939 ctttaaggactttaaataataaatttttatgaaaaattgtgcattcaatgcattgaaaattgaagtgttaaacttttttaaagaataatttcttaattgg 33963038  T
Q  156 aaaaccttaaa 166  Q
    ||||| |||||    
T  33963039 aaaactttaaa 33963049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 64 - 192
Target Start/End: Complemental strand, 37597590 - 37597460
Alignment:
Q  64 actttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgt-taaactttttcaaagaataatttcttaattggaaaacct 162  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||  |    |||||||||||| |||||||||||||| ||||||    
T  37597590 actttaaataataaaattttatgggaaattgtgcatttaatgcattggaaattgaagtgaattttttttttcaaagaacaatttcttaattgggaaacct 37597491  T
Q  163 taaa-agtgcccttaaagcactcgttaacaa 192  Q
    |||| ||||||||||||||||||||||||||    
T  37597490 taaagagtgcccttaaagcactcgttaacaa 37597460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 59 - 164
Target Start/End: Complemental strand, 18734459 - 18734354
Alignment:
Q  59 taaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattggaaa 158  Q
    ||||||||| ||||| ||||||||||||  |||||||||||| |||  ||||||||||||||||||||||||||| || |||||||||||||||||  ||    
T  18734459 taaggacttgaaatagtaaatttttatgaaaaattgtgcattcaatgtatcggaaattgaagtgttaaacttttttaaggaataatttcttaattgagaa 18734360  T
Q  159 acctta 164  Q
    ||||||    
T  18734359 acctta 18734354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 7933405 - 7933334
Alignment:
Q  55 actttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaa 126  Q
    |||||||| |||||||||| ||||||||||||  ||||| |||||| ||| |||||||||||||||||||||    
T  7933405 actttaagtactttaaatagtaaatttttatgaaaaattatgcattcaatgcatcggaaattgaagtgttaa 7933334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 153
Target Start/End: Complemental strand, 18684458 - 18684375
Alignment:
Q  70 aataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaatt 153  Q
    |||||||| ||||||||  || ||||| ||||||||||| |||||||||| |||   ||||||| ||||||||| ||| |||||    
T  18684458 aataataactttttatgaaaatttgtgtatttaatacattggaaattgaattgtatgacttttttaaagaataacttcctaatt 18684375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 9153506 - 9153580
Alignment:
Q  92 ttgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattggaaaaccttaaa 166  Q
    ||||| ||| ||| ||| |||||||||||||||   |||||| ||||||||||||||||||| | || |||||||    
T  9153506 ttgtgtattcaatgcattggaaattgaagtgtttgccttttttaaagaataatttcttaatttggaatccttaaa 9153580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 153
Target Start/End: Complemental strand, 32859872 - 32859798
Alignment:
Q  79 tttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaatt 153  Q
    ||||||||  || ||||| ||||||||||| |||||||||| ||||  ||||||| ||||||||| ||| |||||    
T  32859872 tttttatgaaaacttgtgtatttaatacattggaaattgaactgtttgacttttttaaagaataacttcctaatt 32859798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 153
Target Start/End: Original strand, 32770766 - 32770863
Alignment:
Q  56 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaatt 153  Q
    |||||||||||||| ||| |||| |||||||| || || |||  | ||| |||  ||||||||||| ||||  ||||||||  |||||||||||||||    
T  32770766 ctttaaggactttagatagtaaaattttatggaaatttatgcggtcaatgcattcgaaattgaagtattaagttttttcaataaataatttcttaatt 32770863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 27 - 176
Target Start/End: Original strand, 122432 - 122582
Alignment:
Q  27 gaaatgttaacgaatgtccttaaggcatactttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaa 126  Q
    ||||||||||||| || | ||| ||||| ||||||||| ||||| || ||| ||||||||| |||||||||||||||| ||||||||||| |||||||||    
T  122432 gaaatgttaacgagtgcctttagggcattctttaaggattttaagtagtaattttttatggaaaattgtgcatttaatgcatcggaaattaaagtgttaa 122531  T
Q  127 actttttcaaagaataatttcttaattggaaaaccttaaa-agtgccctta 176  Q
    ||||||||||||||||||||||||||||  ||| |||||| ||||||||||    
T  122532 actttttcaaagaataatttcttaattgagaaatcttaaagagtgccctta 122582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 27 - 166
Target Start/End: Complemental strand, 38380597 - 38380458
Alignment:
Q  27 gaaatgttaacgaatgtccttaaggcatactttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaa 126  Q
    |||||||||||||| |  |||  ||||| |||||||||||||||||| ||||||||||||| ||||| |||||||||| | |||||||||||||||||||    
T  38380597 gaaatgttaacgaacgctcttggggcattctttaaggactttaaatagtaaatttttatggaaaattatgcatttaatgcttcggaaattgaagtgttaa 38380498  T
Q  127 actttttcaaagaataatttcttaattggaaaaccttaaa 166  Q
    |||||||||||||| ||||| |||||||| |||| |||||    
T  38380497 actttttcaaagaaaaatttattaattgggaaactttaaa 38380458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 89 - 195
Target Start/End: Complemental strand, 31655580 - 31655473
Alignment:
Q  89 aaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattggaaaacctt-aaaagtgcccttaaagcactcgtt 187  Q
    |||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||| |||||||| ||||||| ||||||||||| |  |||||||||    
T  31655580 aaattgtgcattcaatacatcggatattgaagtgttaaacttttttaaagaataattttttaattgggaaaccttaaaaagtgccctaagggcactcgtt 31655481  T
Q  188 aacaagac 195  Q
    ||||||||    
T  31655480 aacaagac 31655473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 27 - 166
Target Start/End: Original strand, 38949026 - 38949165
Alignment:
Q  27 gaaatgttaacgaatgtccttaaggcatactttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaa 126  Q
    ||||||||||||| |||  | | ||||  |||||||||||| ||||| ||||||||||||  |||||||||||| ||| |||||||||||||||||||||    
T  38949026 gaaatgttaacgagtgttttaagggcactctttaaggacttgaaatagtaaatttttatgaaaaattgtgcattcaatgcatcggaaattgaagtgttaa 38949125  T
Q  127 actttttcaaagaataatttcttaattggaaaaccttaaa 166  Q
    | ||||| ||  |||||||| |||||||||||| ||||||    
T  38949126 atttttttaagaaataattttttaattggaaaatcttaaa 38949165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 60 - 199
Target Start/End: Complemental strand, 32893117 - 32892977
Alignment:
Q  60 aaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattggaaaa 159  Q
    |||||||||||||| |||| |||||| | |||||||||||| ||| ||||| |||||||| |||||||||||||  || ||||| |||||||||| ||||    
T  32893117 aaggactttaaatagtaaacttttatagaaaattgtgcattcaatgcatcgaaaattgaaatgttaaactttttttaaaaataaattcttaattgaaaaa 32893018  T
Q  160 ccttaaa--agtgcccttaaagcactcgttaacaagacccta 199  Q
    |||||||  |||| ||||||| |||||||||| |||||||||    
T  32893017 ccttaaaagagtgtccttaaaacactcgttaa-aagacccta 32892977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 64 - 166
Target Start/End: Original strand, 39804890 - 39804993
Alignment:
Q  64 actttaaataataaattttt-atgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattggaaaacct 162  Q
    |||||||||| ||||||||| |||  ||||||||||||||||  |||  |||||||||||||||| ||||||||| |||||||| |||||||||||||||    
T  39804890 actttaaatagtaaattttttatgaaaaattgtgcatttaatgtatcaaaaattgaagtgttaaattttttcaaataataattttttaattggaaaacct 39804989  T
Q  163 taaa 166  Q
    ||||    
T  39804990 taaa 39804993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 80 - 154
Target Start/End: Original strand, 23133068 - 23133142
Alignment:
Q  80 ttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattg 154  Q
    |||||| | |||||||| ||| ||| |||||||||||||||||||||||||||| || |||||||||||||||||    
T  23133068 ttttatagaaaattgtgtattcaatgcatcggaaattgaagtgttaaacttttttaaggaataatttcttaattg 23133142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 115 - 197
Target Start/End: Complemental strand, 50131113 - 50131028
Alignment:
Q  115 ttgaagtgttaaa--ctttttcaaagaataatttcttaattggaaaaccttaaa-agtgcccttaaagcactcgttaacaagaccc 197  Q
    |||||||||||||  |||||||||||||||||||||||||||| |||||||||| | |||||| |  |||||||||||||||||||    
T  50131113 ttgaagtgttaaaaactttttcaaagaataatttcttaattgggaaaccttaaagaatgccctcagggcactcgttaacaagaccc 50131028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 34469571 - 34469632
Alignment:
Q  64 actttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgtta 125  Q
    |||||||||||||||||||||||  |||||||||||||||| |||||||||||||| |||||    
T  34469571 actttaaataataaatttttatgaaaaattgtgcatttaatgcatcggaaattgaaatgtta 34469632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 57 - 155
Target Start/End: Complemental strand, 7388884 - 7388786
Alignment:
Q  57 tttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattgg 155  Q
    |||||| |||||| ||| ||||||||||||| || ||||||||||||| |||||||||||| |   ||| |||||||||| | ||| ||||||||||||    
T  7388884 tttaagaactttagatagtaaatttttatggaaacttgtgcatttaatgcatcggaaattggaacattagactttttcaatggatattttcttaattgg 7388786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 100 - 197
Target Start/End: Complemental strand, 28695832 - 28695734
Alignment:
Q  100 ttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattggaaaaccttaaa-agtgcccttaaagcactcgttaacaagaccc 197  Q
    ||||||||| |||||||||||| ||  ||||||| ||| ||||||||||| ||| | || ||||||| ||||||||||  |||||||||||||||||||    
T  28695832 ttaatacattggaaattgaagtttttgacttttttaaaaaataatttctttattagtaatccttaaagagtgcccttagggcactcgttaacaagaccc 28695734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 142
Target Start/End: Original strand, 49011880 - 49011965
Alignment:
Q  57 tttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaata 142  Q
    ||||||||||||||||| ||| ||||| ||  || ||||||||||||| ||||| |||||||||| ||||||||||| || |||||    
T  49011880 tttaaggactttaaatagtaagtttttgtgaaaacttgtgcatttaatgcatcgaaaattgaagtattaaacttttttaatgaata 49011965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 55855255 - 55855175
Alignment:
Q  56 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaaga 139  Q
    |||||||||||||||||||||||||||||||  |||| ||| |||||||   ||| |||||||||||||||||||||| |||||    
T  55855255 ctttaaggactttaaataataaatttttatgaaaaatcgtg-atttaat--gtcgaaaattgaagtgttaaacttttttaaaga 55855175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 192
Target Start/End: Complemental strand, 40071383 - 40071282
Alignment:
Q  92 ttgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattggaaaaccttaaa-agtgcccttaaagcactcgttaac 190  Q
    ||||||||| ||| | | |||||||||||| ||  |||||||||| | |||||||||||||| |||| ||||||| |||| | ||| ||||||| |||||    
T  40071383 ttgtgcattcaatgcgttggaaattgaagtattggactttttcaatgcataatttcttaattagaaatccttaaagagtgtcattagagcactcattaac 40071284  T
Q  191 aa 192  Q
    ||    
T  40071283 aa 40071282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 153
Target Start/End: Complemental strand, 2063571 - 2063488
Alignment:
Q  70 aataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaatt 153  Q
    |||| ||| ||||||||  || ||||| ||||||||||| |||||||||| ||||  ||||||| ||||||||| ||| |||||    
T  2063571 aatagtaactttttatgaaaatttgtgtatttaatacattggaaattgaactgtttgacttttttaaagaataacttcctaatt 2063488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 206
Target Start/End: Complemental strand, 36702786 - 36702758
Alignment:
Q  178 agcactcgttaacaagaccctaataataa 206  Q
    |||||||||||||||||||||||||||||    
T  36702786 agcactcgttaacaagaccctaataataa 36702758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 153
Target Start/End: Complemental strand, 48098025 - 48097965
Alignment:
Q  93 tgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaatt 153  Q
    |||| |||||||  || |||||||||| | || |||||||| |||||||||||||||||||    
T  48098025 tgtgtatttaatgtattggaaattgaactatttaacttttttaaagaataatttcttaatt 48097965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 57 - 195
Target Start/End: Complemental strand, 3973922 - 3973783
Alignment:
Q  57 tttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattgga 156  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||||||| ||||||||||||||| ||| |||||||| || ||||||||||||||||||     
T  3973922 tttaaggacttgaaatagtaaatttttatggaaaattgtgcatttaatgcatcggaaattgaagcgttgaacttttttaaggaataatttcttaattggg 3973823  T
Q  157 aaaccttaaa-agtgcccttaaagcactcgttaacaagac 195  Q
    |||||||||| ||||| ||||  ||||| |||||||||||    
T  3973822 aaaccttaaagagtgctcttagggcacttgttaacaagac 3973783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 57 - 195
Target Start/End: Original strand, 3995955 - 3996094
Alignment:
Q  57 tttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattgga 156  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||||||| ||||||||||||||| ||| |||||||| || |||||||| |||||||||     
T  3995955 tttaaggacttgaaatagtaaatttttatggaaaattgtgcatttaatgcatcggaaattgaagcgttgaacttttttaaggaataattgcttaattggg 3996054  T
Q  157 aaaccttaaa-agtgcccttaaagcactcgttaacaagac 195  Q
    |||||||||| ||||| ||||  ||||| |||||||||||    
T  3996055 aaaccttaaagagtgctcttagggcacttgttaacaagac 3996094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 27 - 167
Target Start/End: Complemental strand, 49682306 - 49682166
Alignment:
Q  27 gaaatgttaacgaatgtccttaaggcatactttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaa 126  Q
    |||||||||||||||||||| |  | ||  ||||||||||||||||| ||||||||||| | |||||||||||| ||| | |||||||||||| ||||||    
T  49682306 gaaatgttaacgaatgtcctaagagtattttttaaggactttaaatagtaaatttttatagaaaattgtgcattcaatgcttcggaaattgaaatgttaa 49682207  T
Q  127 actttttcaaagaataatttcttaattggaaaaccttaaaa 167  Q
    ||||||| || ||||||||| ||||||| ||||||||||||    
T  49682206 acttttttaaggaataattttttaattgaaaaaccttaaaa 49682166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 57 - 195
Target Start/End: Original strand, 4009483 - 4009622
Alignment:
Q  57 tttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattgga 156  Q
    ||||||||| | ||||| ||||||||| ||| |||||||||||||||| ||||||||||||||| ||| |||||||| || ||||||||||||||||||     
T  4009483 tttaaggacatgaaatagtaaatttttgtggaaaattgtgcatttaatgcatcggaaattgaagcgttgaacttttttaaggaataatttcttaattggg 4009582  T
Q  157 aaaccttaaa-agtgcccttaaagcactcgttaacaagac 195  Q
    |||||||||| ||||| ||||  ||||| |||||||||||    
T  4009583 aaaccttaaagagtgctcttagggcacttgttaacaagac 4009622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 28 - 197
Target Start/End: Original strand, 21813124 - 21813290
Alignment:
Q  28 aaatgttaacgaatgtccttaaggcatactttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaa 127  Q
    ||||||||| || |||||| | ||||  ||||||||| |||||||| ||||||||||||| ||||| |||||| ||| |||||||| || ||||||||||    
T  21813124 aaatgttaatgagtgtcctaagggcactctttaaggattttaaatagtaaatttttatggaaaattatgcattcaatgcatcggaatttaaagtgttaaa 21813223  T
Q  128 ctttttcaaagaataatttcttaattggaaaaccttaaaagtgcccttaaagcactcgttaacaagaccc 197  Q
    ||||||||| |||||||||||||||||  ||||   ||||||||||| ||   |||||||||||| ||||    
T  21813224 ctttttcaatgaataatttcttaattgagaaac---aaaagtgccctgaagagactcgttaacaaaaccc 21813290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 89 - 166
Target Start/End: Complemental strand, 31294447 - 31294370
Alignment:
Q  89 aaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattggaaaaccttaaa 166  Q
    |||| ||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31294447 aaatggtgcattcaatgcatcggaaattaaagtgttaaactttttcaaagaataatttcttaattagaaaaccttaaa 31294370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 32606385 - 32606486
Alignment:
Q  63 gactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattggaaaacct 162  Q
    ||||||||||||||||||||||||  ||||| |||||| ||| |||||||||||||| ||||||  |||||||||  ||||||| ||||||| |||||||    
T  32606385 gactttaaataataaatttttatgaaaaattatgcattcaatgcatcggaaattgaaatgttaacttttttcaaaatataattttttaattgaaaaacct 32606484  T
Q  163 ta 164  Q
    ||    
T  32606485 ta 32606486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 39145077 - 39144981
Alignment:
Q  56 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaatt 153  Q
    |||||| |||||||||||||||||||| || | ||||| |||||| ||| |||||||||||||||||||||| ||||| ||| || ||||||||||||    
T  39145077 ctttaaagactttaaataataaatttt-atagaaaattatgcattcaatgcatcggaaattgaagtgttaaaattttttaaaaaacaatttcttaatt 39144981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 29212810 - 29212713
Alignment:
Q  56 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaatt 153  Q
    |||||| ||||||| ||| ||||||||||| | || ||||||||| ||||||||  |||||||||  ||| |||||||||| ||||| ||||||||||    
T  29212810 ctttaaagactttagatattaaatttttatagaaacttgtgcattcaatacatcataaattgaagcattagactttttcaatgaatagtttcttaatt 29212713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 167
Target Start/End: Original strand, 29484855 - 29484943
Alignment:
Q  79 tttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattggaaaaccttaaaa 167  Q
    ||||||| | |||||||| ||| |||  || | |||||||||||||| | ||||| ||||||||||||||||||| ||||| |||||||    
T  29484855 tttttatagaaaattgtgtattcaatttattgaaaattgaagtgttagatttttttaaagaataatttcttaattagaaaatcttaaaa 29484943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 174
Target Start/End: Complemental strand, 34285448 - 34285341
Alignment:
Q  64 actttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaata-atttcttaattggaaaacct 162  Q
    |||||||||| |||||||||||   || |||||||||||||     |||| ||||||||||||||||||| |||||||| |||| |||||||| || |||    
T  34285448 actttaaatagtaaatttttataaaaatttgtgcatttaat-----ggaagttgaagtgttaaacttttttaaagaatatattttttaattgggaagcct 34285354  T
Q  163 taaa-agtgccct 174  Q
    |||| ||||||||    
T  34285353 taaagagtgccct 34285341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 166
Target Start/End: Complemental strand, 36494263 - 36494175
Alignment:
Q  79 tttttatgggaaattgtgcatttaatacatcggaaattgaagtgtta-aactttttcaaagaataatttcttaattggaaaaccttaaa 166  Q
    ||||||||| || ||||||||| ||||||| |||||||||||| ||| |  |||||||| ||||| |||||||||||| || |||||||    
T  36494263 tttttatggaaacttgtgcattcaatacattggaaattgaagtattagatttttttcaatgaatagtttcttaattgggaatccttaaa 36494175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 153
Target Start/End: Original strand, 54290786 - 54290870
Alignment:
Q  69 aaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaatt 153  Q
    ||||||||  ||||||||  || ||||| ||||||||||| |||||||||| ||||  ||||||| ||||||||| ||| |||||    
T  54290786 aaataatatctttttatgaaaacttgtgtatttaatacattggaaattgaactgtttgacttttttaaagaataacttcctaatt 54290870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 32734719 - 32734654
Alignment:
Q  128 ctttttcaaagaataatttcttaattggaaaaccttaaa-agtgcccttaaagcactcgttaacaa 192  Q
    |||||| ||||||||||||||| ||| | || ||||||| ||||||||||  ||||||||||||||    
T  32734719 cttttttaaagaataatttctttattaggaatccttaaagagtgcccttagggcactcgttaacaa 32734654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 143
Target Start/End: Complemental strand, 43804065 - 43803992
Alignment:
Q  70 aataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataa 143  Q
    |||| ||| ||||||||  || ||||| ||||||||||| |||||||||| ||||  ||||||| |||||||||    
T  43804065 aatagtaactttttatgaaaacttgtgtatttaatacattggaaattgaattgtttgacttttttaaagaataa 43803992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 69 - 198
Target Start/End: Original strand, 5013 - 5143
Alignment:
Q  69 aaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattggaaaacctt-aaaa 167  Q
    ||||| ||||||||||||| ||||| |||||| ||| ||| |||||||||| ||||||||||||| || ||||||||| |||||||| ||||||| ||||    
T  5013 aaatagtaaatttttatggaaaattatgcattcaatgcatgggaaattgaaatgttaaacttttttaaggaataattttttaattgggaaaccttaaaaa 5112  T
Q  168 gtgcccttaaagcactcgttaacaagaccct 198  Q
    |||  ||||| ||||| ||||||||||||||    
T  5113 gtgttcttaaggcacttgttaacaagaccct 5143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 56 - 166
Target Start/End: Original strand, 29988325 - 29988433
Alignment:
Q  56 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattgg 155  Q
    |||||||||||||||||| ||||||||||||| ||||||  |||| ||||||||  ||||||||   ||| ||||||| ||||||||||||||||||||     
T  29988325 ctttaaggactttaaatagtaaatttttatggaaaattgaacattcaatacatcaaaaattgaa--attatacttttttaaagaataatttcttaattga 29988422  T
Q  156 aaaaccttaaa 166  Q
     ||||||||||    
T  29988423 gaaaccttaaa 29988433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 29408042 - 29407967
Alignment:
Q  127 actttttcaaagaataatttcttaattggaaaaccttaaa-agtgcccttaaagcactcgttaacaagaccctaat 201  Q
    ||||||| ||||||||||||||| ||| | || ||||||| ||||||||||| |||||||||||||||||||||||    
T  29408042 acttttttaaagaataatttctttattaggaatccttaaagagtgcccttaaggcactcgttaacaagaccctaat 29407967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 153
Target Start/End: Original strand, 10570907 - 10571035
Alignment:
Q  25 aagaaatgttaacgaatgtccttaaggcatactttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagtgtt 124  Q
    |||||||| ||||||||||| | | | ||  |||||| |||||||  || ||||||||||| | || |||| |||| ||| ||||  |||||||||| ||    
T  10570907 aagaaatgctaacgaatgtcataaggacactctttaaagactttatttagtaaatttttatagaaatttgttcattcaatgcatcaaaaattgaagtatt 10571006  T
Q  125 aaactttttcaaagaataatttcttaatt 153  Q
     ||| ||||||| ||||| ||||||||||    
T  10571007 gaacattttcaatgaatagtttcttaatt 10571035  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 118
Target Start/End: Original strand, 34530349 - 34530440
Alignment:
Q  27 gaaatgttaacgaatgtccttaaggcatactttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattga 118  Q
    ||||||||||||| || ||| |  |||| ||||||| |||||||||| ||  ||||||||| ||||||| |||| ||||||| | |||||||    
T  34530349 gaaatgttaacgagtgccctaagagcattctttaagcactttaaatagtatgtttttatggaaaattgtacattcaatacattgaaaattga 34530440  T

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Target: scaffold0172 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 79 - 194
Target Start/End: Complemental strand, 13552 - 13436
Alignment:
Q  79 tttttatgggaaattgtgcatttaatacatcggaaattgaagtgttaaactttttcaaagaataatttcttaattggaaaaccttaaa-agtgcccttaa 177  Q
    ||||||||| || ||||||||| ||  |||||||||||||||| ||| |||||||||| ||||| |||||||||| | || | ||||| ||||||||||     
T  13552 tttttatggaaacttgtgcattcaaagcatcggaaattgaagtattagactttttcaatgaatagtttcttaattaggaatctttaaagagtgcccttag 13453  T
Q  178 agcactcgttaacaaga 194  Q
     |||||| ||| |||||    
T  13452 ggcactcattagcaaga 13436  T

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Target: scaffold0036 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 166
Target Start/End: Complemental strand, 21329 - 21301
Alignment:
Q  138 gaataatttcttaattggaaaaccttaaa 166  Q
    |||||||||||||||||||||||||||||    
T  21329 gaataatttcttaattggaaaaccttaaa 21301  T

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