View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4137_low_4 (Length: 372)

Name: NF4137_low_4
Description: NF4137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4137_low_4
NF4137_low_4
[»] chr1 (11 HSPs)
chr1 (18-261)||(40905872-40906115)
chr1 (289-367)||(40905779-40905857)
chr1 (289-323)||(9922206-9922240)
chr1 (292-323)||(15873802-15873833)
chr1 (292-325)||(38327140-38327173)
chr1 (290-323)||(41081254-41081287)
chr1 (293-325)||(19612231-19612263)
chr1 (289-325)||(24876377-24876413)
chr1 (293-325)||(33090165-33090197)
chr1 (289-325)||(40158573-40158609)
chr1 (289-325)||(52736633-52736669)
[»] chr8 (7 HSPs)
chr8 (289-322)||(26413399-26413432)
chr8 (293-325)||(39162255-39162287)
chr8 (21-83)||(35514547-35514609)
chr8 (289-322)||(32535494-32535527)
chr8 (293-325)||(5135250-5135282)
chr8 (289-325)||(6568578-6568614)
chr8 (293-325)||(6802061-6802093)
[»] chr3 (10 HSPs)
chr3 (23-96)||(2315457-2315529)
chr3 (294-325)||(35418065-35418096)
chr3 (289-323)||(20494022-20494056)
chr3 (289-323)||(53506230-53506264)
chr3 (293-323)||(54258452-54258482)
chr3 (296-325)||(26599634-26599663)
chr3 (292-325)||(46612917-46612950)
chr3 (289-321)||(1707277-1707309)
chr3 (289-325)||(23558761-23558797)
chr3 (289-325)||(42139562-42139598)
[»] chr6 (2 HSPs)
chr6 (289-325)||(19745337-19745373)
chr6 (289-329)||(23666329-23666369)
[»] chr5 (2 HSPs)
chr5 (291-323)||(37993622-37993654)
chr5 (289-321)||(10293518-10293550)
[»] chr4 (11 HSPs)
chr4 (289-321)||(23149867-23149899)
chr4 (289-321)||(28485799-28485831)
chr4 (289-325)||(56446886-56446922)
chr4 (290-325)||(41136525-41136560)
chr4 (294-325)||(47774069-47774100)
chr4 (289-323)||(29728745-29728779)
chr4 (289-323)||(50744801-50744835)
chr4 (294-323)||(20863764-20863793)
chr4 (289-325)||(24166627-24166663)
chr4 (293-325)||(25209821-25209853)
chr4 (293-325)||(49437750-49437782)
[»] chr7 (2 HSPs)
chr7 (293-323)||(32002086-32002116)
chr7 (289-323)||(46896129-46896163)
[»] chr2 (2 HSPs)
chr2 (289-322)||(15997486-15997519)
chr2 (294-322)||(33582411-33582439)
[»] scaffold0450 (1 HSPs)
scaffold0450 (289-329)||(11411-11451)


Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 40906115 - 40905872
Alignment:
Q  18 caaaaattgtacaagaaaacagtgggaaaaatactggctctatattctcttatgtttattagttgatagtgcaaatgaattgaaagaagcaataccggct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40906115 caaaaattgtacaagaaaacagtgggaaaaatactggctctatattctcttatgtttattagttgatagtgcaaatgaattgaaagaagcaataccggct 40906016  T
Q  118 gatgtgctatgttttagcctaagtttgatataggagtgataagttgataaattgttttcattacaattttactagcaaaactgatacatcattttttgct 217  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  40906015 aatgtgctatgttttagcctaagtttgatataggagtgataagttgataaattgtttacattacaattttactagcaaaactgatacatcattttttgct 40905916  T
Q  218 aaacgtattcacaaataagacattttgtatgtgtgtatgttggc 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  40905915 aaacgtattcacaaataagacattttgtatgtgtgtatgttggc 40905872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 289 - 367
Target Start/End: Complemental strand, 40905857 - 40905779
Alignment:
Q  289 atgacaaatgttagtatgttaattgttatgttagtatctttgaaccctggacatttaactcctcaactcctttgcttct 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40905857 atgacaaatgttagtatgttaattgttatgttagtatctttgaaccctggacatttaactcctcaactcctttgattct 40905779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 323
Target Start/End: Complemental strand, 9922240 - 9922206
Alignment:
Q  289 atgacaaatgttagtatgttaattgttatgttagt 323  Q
    |||||||||||||||||||||||||||||||||||    
T  9922240 atgacaaatgttagtatgttaattgttatgttagt 9922206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 323
Target Start/End: Complemental strand, 15873833 - 15873802
Alignment:
Q  292 acaaatgttagtatgttaattgttatgttagt 323  Q
    ||||||||||||||||||||||||||||||||    
T  15873833 acaaatgttagtatgttaattgttatgttagt 15873802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 325
Target Start/End: Complemental strand, 38327173 - 38327140
Alignment:
Q  292 acaaatgttagtatgttaattgttatgttagtat 325  Q
    |||||| |||||||||||||||||||||||||||    
T  38327173 acaaatattagtatgttaattgttatgttagtat 38327140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 323
Target Start/End: Complemental strand, 41081287 - 41081254
Alignment:
Q  290 tgacaaatgttagtatgttaattgttatgttagt 323  Q
    |||||||||||||||| |||||||||||||||||    
T  41081287 tgacaaatgttagtattttaattgttatgttagt 41081254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Complemental strand, 19612263 - 19612231
Alignment:
Q  293 caaatgttagtatgttaattgttatgttagtat 325  Q
    ||||||| |||||||||||||||||||||||||    
T  19612263 caaatgtcagtatgttaattgttatgttagtat 19612231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 24876377 - 24876413
Alignment:
Q  289 atgacaaatgttagtatgttaattgttatgttagtat 325  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  24876377 atgacaaatgttagtaagttaattgttacgttagtat 24876413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Original strand, 33090165 - 33090197
Alignment:
Q  293 caaatgttagtatgttaattgttatgttagtat 325  Q
    |||||||||||||||||| ||||||||||||||    
T  33090165 caaatgttagtatgttaactgttatgttagtat 33090197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 40158609 - 40158573
Alignment:
Q  289 atgacaaatgttagtatgttaattgttatgttagtat 325  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  40158609 atgacaaatgttaatatgttaactgttatgttagtat 40158573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 52736633 - 52736669
Alignment:
Q  289 atgacaaatgttagtatgttaattgttatgttagtat 325  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  52736633 atgacaaatgttactatgttaattgttatgtgagtat 52736669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 289 - 322
Target Start/End: Original strand, 26413399 - 26413432
Alignment:
Q  289 atgacaaatgttagtatgttaattgttatgttag 322  Q
    ||||||||||||||||||||||||||||||||||    
T  26413399 atgacaaatgttagtatgttaattgttatgttag 26413432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 325
Target Start/End: Complemental strand, 39162287 - 39162255
Alignment:
Q  293 caaatgttagtatgttaattgttatgttagtat 325  Q
    |||||||||||||||||||||||||||||||||    
T  39162287 caaatgttagtatgttaattgttatgttagtat 39162255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 35514547 - 35514609
Alignment:
Q  21 aaattgtacaagaaaacagtgggaaaaatactggctctatattctcttatgtttattagttga 83  Q
    |||||||| |||||||  ||| |||||||  |||  |||||||||||||||||||||||||||    
T  35514547 aaattgtaaaagaaaatggtgtgaaaaatgttggacctatattctcttatgtttattagttga 35514609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 322
Target Start/End: Complemental strand, 32535527 - 32535494
Alignment:
Q  289 atgacaaatgttagtatgttaattgttatgttag 322  Q
    ||||||||||||| ||||||||||||||||||||    
T  32535527 atgacaaatgttaatatgttaattgttatgttag 32535494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Complemental strand, 5135282 - 5135250
Alignment:
Q  293 caaatgttagtatgttaattgttatgttagtat 325  Q
    |||||||||||||||||||||| ||||||||||    
T  5135282 caaatgttagtatgttaattgtaatgttagtat 5135250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 6568614 - 6568578
Alignment:
Q  289 atgacaaatgttagtatgttaattgttatgttagtat 325  Q
    ||||||||||||||||| | |||||||||||||||||    
T  6568614 atgacaaatgttagtatttaaattgttatgttagtat 6568578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Complemental strand, 6802093 - 6802061
Alignment:
Q  293 caaatgttagtatgttaattgttatgttagtat 325  Q
    |||| ||||||||||||||||||||||||||||    
T  6802093 caaacgttagtatgttaattgttatgttagtat 6802061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 2315457 - 2315529
Alignment:
Q  23 attgtacaagaaaacagtgggaaaaatactggctctatattctcttatgtttattagttgatagtgcaaatgaa 96  Q
    |||||| |||||||| |||||  ||||| ||| |||||||||||||||||||||||| ||| |||| |||||||    
T  2315457 attgtaaaagaaaacggtgggggaaatattggatctatattctcttatgtttattagatga-agtgaaaatgaa 2315529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 325
Target Start/End: Original strand, 35418065 - 35418096
Alignment:
Q  294 aaatgttagtatgttaattgttatgttagtat 325  Q
    ||||||||||||||||||||||||||||||||    
T  35418065 aaatgttagtatgttaattgttatgttagtat 35418096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 323
Target Start/End: Complemental strand, 20494056 - 20494022
Alignment:
Q  289 atgacaaatgttagtatgttaattgttatgttagt 323  Q
    |||||||||||||||||||||||| ||||||||||    
T  20494056 atgacaaatgttagtatgttaattattatgttagt 20494022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 323
Target Start/End: Complemental strand, 53506264 - 53506230
Alignment:
Q  289 atgacaaatgttagtatgttaattgttatgttagt 323  Q
    |||| ||||||||||||||||||||||||||||||    
T  53506264 atgataaatgttagtatgttaattgttatgttagt 53506230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 323
Target Start/End: Complemental strand, 54258482 - 54258452
Alignment:
Q  293 caaatgttagtatgttaattgttatgttagt 323  Q
    |||||||||||||||||||||||||||||||    
T  54258482 caaatgttagtatgttaattgttatgttagt 54258452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 325
Target Start/End: Complemental strand, 26599663 - 26599634
Alignment:
Q  296 atgttagtatgttaattgttatgttagtat 325  Q
    ||||||||||||||||||||||||||||||    
T  26599663 atgttagtatgttaattgttatgttagtat 26599634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 325
Target Start/End: Original strand, 46612917 - 46612950
Alignment:
Q  292 acaaatgttagtatgttaattgttatgttagtat 325  Q
    |||||||||| |||||||||||||||||||||||    
T  46612917 acaaatgttaatatgttaattgttatgttagtat 46612950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 321
Target Start/End: Original strand, 1707277 - 1707309
Alignment:
Q  289 atgacaaatgttagtatgttaattgttatgtta 321  Q
    ||||||||||||| |||||||||||||||||||    
T  1707277 atgacaaatgttattatgttaattgttatgtta 1707309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 23558761 - 23558797
Alignment:
Q  289 atgacaaatgttagtatgttaattgttatgttagtat 325  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  23558761 atgacaaatgttaatatgttaattgtaatgttagtat 23558797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 42139562 - 42139598
Alignment:
Q  289 atgacaaatgttagtatgttaattgttatgttagtat 325  Q
    |||||||||||||||||||| || |||||||||||||    
T  42139562 atgacaaatgttagtatgttgatagttatgttagtat 42139598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 19745373 - 19745337
Alignment:
Q  289 atgacaaatgttagtatgttaattgttatgttagtat 325  Q
    ||||||| |||||||||||||||||||||||||||||    
T  19745373 atgacaattgttagtatgttaattgttatgttagtat 19745337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 329
Target Start/End: Complemental strand, 23666369 - 23666329
Alignment:
Q  289 atgacaaatgttagtatgttaattgttatgttagtatcttt 329  Q
    ||||||||| |||||||||||||| |||||||||| |||||    
T  23666369 atgacaaattttagtatgttaattattatgttagtttcttt 23666329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 323
Target Start/End: Complemental strand, 37993654 - 37993622
Alignment:
Q  291 gacaaatgttagtatgttaattgttatgttagt 323  Q
    |||||||||||||||||||||||||||||||||    
T  37993654 gacaaatgttagtatgttaattgttatgttagt 37993622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 321
Target Start/End: Original strand, 10293518 - 10293550
Alignment:
Q  289 atgacaaatgttagtatgttaattgttatgtta 321  Q
    |||||||||||||||||||||||| ||||||||    
T  10293518 atgacaaatgttagtatgttaattattatgtta 10293550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 321
Target Start/End: Original strand, 23149867 - 23149899
Alignment:
Q  289 atgacaaatgttagtatgttaattgttatgtta 321  Q
    |||||||||||||||||||||||||||||||||    
T  23149867 atgacaaatgttagtatgttaattgttatgtta 23149899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 321
Target Start/End: Complemental strand, 28485831 - 28485799
Alignment:
Q  289 atgacaaatgttagtatgttaattgttatgtta 321  Q
    |||||||||||||||||||||||||||||||||    
T  28485831 atgacaaatgttagtatgttaattgttatgtta 28485799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 56446886 - 56446922
Alignment:
Q  289 atgacaaatgttagtatgttaattgttatgttagtat 325  Q
    ||||||||||||||||||||||||| |||||||||||    
T  56446886 atgacaaatgttagtatgttaattgatatgttagtat 56446922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 290 - 325
Target Start/End: Original strand, 41136525 - 41136560
Alignment:
Q  290 tgacaaatgttagtatgttaattgttatgttagtat 325  Q
    ||||| ||||||||||||||||||||||||||||||    
T  41136525 tgacagatgttagtatgttaattgttatgttagtat 41136560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 325
Target Start/End: Original strand, 47774069 - 47774100
Alignment:
Q  294 aaatgttagtatgttaattgttatgttagtat 325  Q
    ||||||||||||||||||||||||||||||||    
T  47774069 aaatgttagtatgttaattgttatgttagtat 47774100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 323
Target Start/End: Original strand, 29728745 - 29728779
Alignment:
Q  289 atgacaaatgttagtatgttaattgttatgttagt 323  Q
    ||||||| |||||||||||||||||||||||||||    
T  29728745 atgacaagtgttagtatgttaattgttatgttagt 29728779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 323
Target Start/End: Complemental strand, 50744835 - 50744801
Alignment:
Q  289 atgacaaatgttagtatgttaattgttatgttagt 323  Q
    |||||||||||||| ||||||||||||||||||||    
T  50744835 atgacaaatgttagcatgttaattgttatgttagt 50744801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 323
Target Start/End: Complemental strand, 20863793 - 20863764
Alignment:
Q  294 aaatgttagtatgttaattgttatgttagt 323  Q
    ||||||||||||||||||||||||||||||    
T  20863793 aaatgttagtatgttaattgttatgttagt 20863764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 24166627 - 24166663
Alignment:
Q  289 atgacaaatgttagtatgttaattgttatgttagtat 325  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  24166627 atgacaaatgatagtatgttgattgttatgttagtat 24166663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Complemental strand, 25209853 - 25209821
Alignment:
Q  293 caaatgttagtatgttaattgttatgttagtat 325  Q
    |||||||||||||||||||| ||||||||||||    
T  25209853 caaatgttagtatgttaattattatgttagtat 25209821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Complemental strand, 49437782 - 49437750
Alignment:
Q  293 caaatgttagtatgttaattgttatgttagtat 325  Q
    ||||||||||||||||||||||| |||||||||    
T  49437782 caaatgttagtatgttaattgttgtgttagtat 49437750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 323
Target Start/End: Original strand, 32002086 - 32002116
Alignment:
Q  293 caaatgttagtatgttaattgttatgttagt 323  Q
    |||||||||||||||||||||||||||||||    
T  32002086 caaatgttagtatgttaattgttatgttagt 32002116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 323
Target Start/End: Original strand, 46896129 - 46896163
Alignment:
Q  289 atgacaaatgttagtatgttaattgttatgttagt 323  Q
    ||||||||||||||||||||||||||||| |||||    
T  46896129 atgacaaatgttagtatgttaattgttattttagt 46896163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 322
Target Start/End: Complemental strand, 15997519 - 15997486
Alignment:
Q  289 atgacaaatgttagtatgttaattgttatgttag 322  Q
    |||| |||||||||||||||||||||||||||||    
T  15997519 atgaaaaatgttagtatgttaattgttatgttag 15997486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 322
Target Start/End: Complemental strand, 33582439 - 33582411
Alignment:
Q  294 aaatgttagtatgttaattgttatgttag 322  Q
    |||||||||||||||||||||||||||||    
T  33582439 aaatgttagtatgttaattgttatgttag 33582411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 329
Target Start/End: Original strand, 11411 - 11451
Alignment:
Q  289 atgacaaatgttagtatgttaattgttatgttagtatcttt 329  Q
    ||||||||| |||||||||||||| |||||||||| |||||    
T  11411 atgacaaattttagtatgttaattattatgttagtttcttt 11451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University