View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4137_low_9 (Length: 278)

Name: NF4137_low_9
Description: NF4137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4137_low_9
NF4137_low_9
[»] chr5 (11 HSPs)
chr5 (2-104)||(13957151-13957253)
chr5 (1-116)||(36481200-36481315)
chr5 (5-100)||(4440218-4440313)
chr5 (29-117)||(31803477-31803565)
chr5 (1-100)||(3243921-3244020)
chr5 (54-116)||(4175459-4175521)
chr5 (67-117)||(16124238-16124288)
chr5 (30-116)||(25786061-25786147)
chr5 (67-116)||(9127330-9127379)
chr5 (59-115)||(2673958-2674014)
chr5 (1-117)||(3686815-3686931)
[»] chr4 (25 HSPs)
chr4 (1-115)||(8456895-8457009)
chr4 (5-118)||(38009747-38009860)
chr4 (1-115)||(18091388-18091502)
chr4 (1-115)||(14090386-14090500)
chr4 (1-115)||(34603770-34603884)
chr4 (1-117)||(14949066-14949182)
chr4 (1-116)||(26916070-26916186)
chr4 (1-116)||(1391154-1391269)
chr4 (5-117)||(48087848-48087960)
chr4 (1-109)||(30151540-30151648)
chr4 (1-115)||(48509854-48509967)
chr4 (2-116)||(1180884-1180998)
chr4 (7-100)||(56499611-56499704)
chr4 (1-117)||(38866049-38866163)
chr4 (67-115)||(39309142-39309190)
chr4 (61-116)||(19527203-19527258)
chr4 (61-115)||(354172-354226)
chr4 (59-117)||(22828383-22828441)
chr4 (29-118)||(9220022-9220111)
chr4 (61-110)||(19093142-19093191)
chr4 (59-104)||(35232293-35232338)
chr4 (59-115)||(9834484-9834540)
chr4 (59-115)||(44013897-44013953)
chr4 (59-115)||(44217910-44217966)
chr4 (79-115)||(52677150-52677186)
[»] chr8 (17 HSPs)
chr8 (2-116)||(45317796-45317910)
chr8 (5-115)||(6661100-6661210)
chr8 (5-115)||(6741502-6741612)
chr8 (1-115)||(13132101-13132213)
chr8 (1-100)||(40608181-40608280)
chr8 (1-116)||(30205599-30205713)
chr8 (1-117)||(31760007-31760121)
chr8 (1-104)||(40602751-40602854)
chr8 (1-115)||(18842672-18842786)
chr8 (22-117)||(14061130-14061225)
chr8 (22-117)||(18291627-18291722)
chr8 (27-117)||(2888449-2888539)
chr8 (59-109)||(14263745-14263795)
chr8 (61-110)||(26062910-26062959)
chr8 (59-115)||(14228305-14228361)
chr8 (61-117)||(15596547-15596603)
chr8 (59-115)||(35052254-35052310)
[»] chr1 (24 HSPs)
chr1 (1-115)||(52759171-52759285)
chr1 (1-101)||(52825413-52825513)
chr1 (2-100)||(6931257-6931355)
chr1 (39-100)||(22154632-22154694)
chr1 (22-116)||(40926732-40926826)
chr1 (7-100)||(8973447-8973539)
chr1 (1-110)||(31487764-31487873)
chr1 (59-115)||(12231051-12231107)
chr1 (1-100)||(2572114-2572212)
chr1 (29-100)||(12721611-12721682)
chr1 (17-100)||(45230677-45230759)
chr1 (1-115)||(10630554-10630667)
chr1 (59-117)||(20605602-20605660)
chr1 (59-117)||(29830954-29831012)
chr1 (59-117)||(35531273-35531331)
chr1 (59-109)||(37609290-37609340)
chr1 (59-100)||(8464252-8464293)
chr1 (27-100)||(9127838-9127911)
chr1 (79-115)||(2059792-2059828)
chr1 (59-115)||(13507971-13508027)
chr1 (59-115)||(13515159-13515215)
chr1 (59-115)||(13566880-13566936)
chr1 (27-115)||(36318521-36318609)
chr1 (59-115)||(43500707-43500763)
[»] chr3 (17 HSPs)
chr3 (1-115)||(35077530-35077644)
chr3 (1-115)||(47843832-47843946)
chr3 (1-100)||(35458508-35458607)
chr3 (1-116)||(53290749-53290864)
chr3 (1-117)||(28226568-28226675)
chr3 (1-100)||(24569693-24569795)
chr3 (1-118)||(34750798-34750914)
chr3 (1-100)||(26748496-26748594)
chr3 (27-118)||(24050-24141)
chr3 (1-115)||(33491128-33491242)
chr3 (59-104)||(41168959-41169004)
chr3 (59-100)||(54898090-54898131)
chr3 (27-115)||(41425798-41425886)
chr3 (79-115)||(42671879-42671915)
chr3 (27-115)||(43775379-43775467)
chr3 (59-115)||(45101347-45101403)
chr3 (59-115)||(54106464-54106520)
[»] chr7 (16 HSPs)
chr7 (1-115)||(9601879-9601993)
chr7 (1-115)||(9829450-9829564)
chr7 (1-109)||(35860108-35860216)
chr7 (1-100)||(33072188-33072287)
chr7 (1-99)||(22786023-22786120)
chr7 (27-117)||(47408282-47408372)
chr7 (27-116)||(5732058-5732147)
chr7 (27-115)||(33173976-33174064)
chr7 (59-118)||(6799620-6799679)
chr7 (59-116)||(17896476-17896533)
chr7 (59-116)||(33099820-33099877)
chr7 (8-117)||(33921758-33921867)
chr7 (59-100)||(41675188-41675229)
chr7 (59-100)||(46715313-46715354)
chr7 (59-115)||(8265150-8265206)
chr7 (8-104)||(36298171-36298267)
[»] chr2 (22 HSPs)
chr2 (1-115)||(36173202-36173316)
chr2 (1-118)||(33947412-33947529)
chr2 (1-117)||(42263338-42263454)
chr2 (5-100)||(838071-838166)
chr2 (5-99)||(37354136-37354230)
chr2 (25-99)||(42089054-42089128)
chr2 (59-117)||(25787528-25787586)
chr2 (27-116)||(11222301-11222390)
chr2 (34-98)||(29056188-29056252)
chr2 (1-109)||(36404833-36404941)
chr2 (34-114)||(45065248-45065328)
chr2 (59-110)||(30264593-30264644)
chr2 (2-115)||(37077314-37077427)
chr2 (67-104)||(928031-928068)
chr2 (67-108)||(4883812-4883853)
chr2 (59-116)||(10812400-10812457)
chr2 (29-118)||(13215564-13215653)
chr2 (59-116)||(14295742-14295799)
chr2 (27-100)||(35158352-35158425)
chr2 (59-116)||(36375774-36375831)
chr2 (59-116)||(37093650-37093707)
chr2 (22-115)||(44360597-44360690)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-117)||(492173-492289)
[»] chr6 (8 HSPs)
chr6 (27-118)||(26485666-26485757)
chr6 (27-100)||(23777465-23777538)
chr6 (1-100)||(11000809-11000907)
chr6 (1-100)||(15432814-15432912)
chr6 (1-100)||(32250951-32251049)
chr6 (61-115)||(1751415-1751469)
chr6 (22-115)||(22050212-22050305)
chr6 (59-99)||(373924-373964)
[»] scaffold0280 (1 HSPs)
scaffold0280 (59-117)||(8355-8413)
[»] scaffold0135 (1 HSPs)
scaffold0135 (29-118)||(30673-30762)
[»] scaffold0024 (1 HSPs)
scaffold0024 (59-104)||(89371-89416)
[»] scaffold0001 (1 HSPs)
scaffold0001 (27-100)||(419491-419564)
[»] scaffold0009 (1 HSPs)
scaffold0009 (29-117)||(147109-147197)


Alignment Details
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 2 - 104
Target Start/End: Complemental strand, 13957253 - 13957151
Alignment:
Q  2 aaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaa 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  13957253 aaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttggtttatgtaaaaagtcaaaatgtgacaattaaaaaa 13957154  T
Q  102 gaa 104  Q
    |||    
T  13957153 gaa 13957151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 36481200 - 36481315
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||| ||| |||| ||||||||||| ||| |||||||||    
T  36481200 taaggatattataggcaaaccataagttattgtatcaaaagtagtgaaatacatttaatgttttggtttgtgtaaaaagtcaaaatatgataattaaaaa 36481299  T
Q  101 agaatggagggagtat 116  Q
     ||| |||||||||||    
T  36481300 ggaacggagggagtat 36481315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 100
Target Start/End: Original strand, 4440218 - 4440313
Alignment:
Q  5 gatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||| |||| ||||| ||||| |||||||||||||    
T  4440218 gatattataggcaaaacataaattattgtatcaaaagtagtaaaatacatttagtgtcttggtttgtgtaaaaagttaaaatatgacaattaaaaa 4440313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 31803477 - 31803565
Alignment:
Q  29 attgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagtatt 117  Q
    ||||||||||||||||| | ||  ||| | ||||||| ||| |||| || ||||||| |||||||||||||||||| ||||| ||||||    
T  31803477 attgtatcaaaagtagtaacatttattaattgtcttgatttgtgtaaaatgtcaaaaagtgacaattaaaaaagaacggaggtagtatt 31803565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 3243921 - 3244020
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||| ||||||||| |||||| || ||||||||| |||| |||| | ||  ||| | ||||||| |||||||| || |||||||  |||||||||||||    
T  3243921 taaggctattataggaaaaacaaaaattattgtataaaaaatagtaacatttattaattgtcttgatttatgtaaaatgtcaaaaaatgacaattaaaaa 3244020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 4175521 - 4175459
Alignment:
Q  54 tttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagtat 116  Q
    |||| ||||||| ||| |||| || |||||||||||||||||||||| ||| ||||| |||||    
T  4175521 tttattgtcttgctttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggtagtat 4175459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 117
Target Start/End: Complemental strand, 16124288 - 16124238
Alignment:
Q  67 tttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagtatt 117  Q
    |||||||| || |||||||||||||||||||||| ||| ||||| ||||||    
T  16124288 tttatgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggtagtatt 16124238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 25786061 - 25786147
Alignment:
Q  30 ttgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagtat 116  Q
    |||||||||||||||| |||| ||||| |||||||| ||| | || ||| || ||| | |||||||||||| ||| ||| |||||||    
T  25786061 ttgtatcaaaagtagtaaaatgcatttggtgtcttggtttgtataaaaaatctaaaagcgacaattaaaaaggaacggatggagtat 25786147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 9127379 - 9127330
Alignment:
Q  67 tttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagtat 116  Q
    |||||||| || |||||||||||||||||||||| ||| ||||| |||||    
T  9127379 tttatgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggtagtat 9127330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 2674014 - 2673958
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagta 115  Q
    ||||||| ||| |||| || |||||||||||||||||||||| ||| ||||| ||||    
T  2674014 tgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggtagta 2673958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 3686815 - 3686931
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||| ||||||||  |||| | || ||||||||||||||||||  | ||  ||| | ||| ||| ||||| || || |||||||||||| |||||||||    
T  3686815 taaggttattatagtaaaaatagaaattattgtatcaaaagtagcaacatttattgattgttttggtttatataaaacgtcaaaatgtgataattaaaaa 3686914  T
Q  101 agaatggagggagtatt 117  Q
      |||||||| ||||||    
T  3686915 taaatggaggtagtatt 3686931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 8457009 - 8456895
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||    
T  8457009 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttggtttgtgtagaaagtcaaaatgtgacaattaaaaa 8456910  T
Q  101 agaatggagggagta 115  Q
     ||| ||||||||||    
T  8456909 ggaacggagggagta 8456895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 118
Target Start/End: Complemental strand, 38009860 - 38009747
Alignment:
Q  5 gatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaa 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||| |||    
T  38009860 gatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttggtttgtgtaaaaagtcaaaatgtgacaattaaaaaggaa 38009761  T
Q  105 tggagggagtatta 118  Q
     ||||| |||||||    
T  38009760 cggaggtagtatta 38009747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 18091388 - 18091502
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    |||||||||||||   |||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  18091388 taaggatattataattaaaacataagttattgcatcaaaagtagtgaaatacatttagtgtcttggtttgtgtataaagtcaaaatgtgacaattaaaaa 18091487  T
Q  101 agaatggagggagta 115  Q
    |||| ||||||||||    
T  18091488 agaacggagggagta 18091502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 14090386 - 14090500
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||  ||| |||| ||| |||||||||||||||||||||    
T  14090386 taaggatattataggcaaaacacaagttattgtatcaaatgtagtgaaatacatttagtgtcttagtttgtgtaaaaaatcaaaatgtgacaattaaaaa 14090485  T
Q  101 agaatggagggagta 115  Q
    ||||  |||||||||    
T  14090486 agaacagagggagta 14090500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 34603770 - 34603884
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||| |||| ||| |||||||||||||||||||||    
T  34603770 taaggatattataggcaaaacacaagttattgtatcaaatgtagtgaaatacatttagtgtcttgatttgtgtaaaaaatcaaaatgtgacaattaaaaa 34603869  T
Q  101 agaatggagggagta 115  Q
     |||  |||||||||    
T  34603870 ggaacagagggagta 34603884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 14949182 - 14949066
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||| |||| || ||||||||||| ||||||||||    
T  14949182 taaggatattataggcaaaccataagttattgtatcaaaagtagtgaaatacatttagtgtattggtttgtgtaaaacgtcaaaatgtggcaattaaaaa 14949083  T
Q  101 agaatggagggagtatt 117  Q
     ||| | || |||||||    
T  14949082 ggaacgaagtgagtatt 14949066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 26916070 - 26916186
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||| ||||| ||||||| || ||||||||    
T  26916070 taaggatattatagacaaaacataagttattgtatcaaaagtagtgaaatatatttagtgtcttggtttgtgtagaaagttaaaatgtaacgattaaaaa 26916169  T
Q  101 a-gaatggagggagtat 116  Q
    | ||| |||||||||||    
T  26916170 aggaacggagggagtat 26916186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 1391269 - 1391154
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||| |||||||||| ||||||| ||||||    
T  1391269 taaggatattatacgtaaaacataagttattgtatcaaaagtagtgaaatacatttagtatcttggtttgtgtaaaaagtcaaaaagtgacaaataaaaa 1391170  T
Q  101 agaatggagggagtat 116  Q
     ||| |||| ||||||    
T  1391169 ggaacggagagagtat 1391154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 5 - 117
Target Start/End: Original strand, 48087848 - 48087960
Alignment:
Q  5 gatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaa 104  Q
    |||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||| |||| ||| ||||||||||||||||||||| |||    
T  48087848 gatattgtaggcaaaacacaagttattgtatcaaatgtagtgaaatacatttagtgtcttggtttgtgtaaaaaatcaaaatgtgacaattaaaaaggaa 48087947  T
Q  105 tggagggagtatt 117  Q
      | |||||||||    
T  48087948 cagggggagtatt 48087960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 30151648 - 30151540
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    |||||||||||| || ||||||||||||||| ||||||||||| ||||||||||||||| ||||  |||||||| ||||||||||||||| |||||||||    
T  30151648 taaggatattattggtaaaacataagttattatatcaaaagtaatgaaatacatttagtatcttaatttatgtagaaagtcaaaatgtgataattaaaaa 30151549  T
Q  101 agaatggag 109  Q
     ||| ||||    
T  30151548 ggaacggag 30151540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 48509967 - 48509854
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    |||| |||||||||  |||  |||| || |||||||||||||||| ||| | ||||  ||||||| |||||||| |||||||||||||||||||||||||    
T  48509967 taagaatattatagaaaaatgataaatttttgtatcaaaagtagtaaaa-atatttgttgtcttgatttatgtaaaaagtcaaaatgtgacaattaaaaa 48509869  T
Q  101 agaatggagggagta 115  Q
     |||| |||||||||    
T  48509868 ggaatagagggagta 48509854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 116
Target Start/End: Complemental strand, 1180998 - 1180884
Alignment:
Q  2 aaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaa 101  Q
    |||| ||||||||| |||| | || || |||||||||||||||| |||| |||||  ||||||| ||| |||| |||  | ||| ||||||||||||||     
T  1180998 aaggttattataggaaaaagaaaaattgttgtatcaaaagtagtaaaatgcatttgttgtcttggtttgtgtaaaaaacctaaaagtgacaattaaaaag 1180899  T
Q  102 gaatggagggagtat 116  Q
    ||| |||||||||||    
T  1180898 gaacggagggagtat 1180884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 56499704 - 56499611
Alignment:
Q  7 tattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||||||| |||| |||| || ||||||||||| |||| ||||  ||||  ||||||| ||| |||| |||||||||| ||||||||||||||    
T  56499704 tattataggaaaaagataaattgttgtatcaaaaatagtaaaatgtatttgttgtcttggtttgtgtaaaaagtcaaaaggtgacaattaaaaa 56499611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 38866049 - 38866163
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||| ||||||||  |||| |||| || ||| |||||||||||| |||||  |||  ||||||  |||||||| ||||||||||| |||||||||||||    
T  38866049 taaggttattatagaaaaaagataaattgttgcatcaaaagtagtaaaata--tttgttgtcttaatttatgtaaaaagtcaaaatatgacaattaaaaa 38866146  T
Q  101 agaatggagggagtatt 117  Q
     || | ||||| |||||    
T  38866147 ggattagagggcgtatt 38866163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 39309142 - 39309190
Alignment:
Q  67 tttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagta 115  Q
    |||||||| ||||||||||| ||||||||||||| |||| |||||||||    
T  39309142 tttatgtaaaaagtcaaaatatgacaattaaaaaggaatagagggagta 39309190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 19527258 - 19527203
Alignment:
Q  61 tcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagtat 116  Q
    ||||| ||| |||| || |||||||||||||||||||||| ||| |||||||||||    
T  19527258 tcttggtttgtgtaaaacgtcaaaatgtgacaattaaaaaggaaaggagggagtat 19527203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 115
Target Start/End: Original strand, 354172 - 354226
Alignment:
Q  61 tcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagta 115  Q
    ||||| |||||||| || |||||||||||||||||||||| ||| ||||| ||||    
T  354172 tcttggtttatgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggtagta 354226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 22828441 - 22828383
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagtatt 117  Q
    ||||||| ||| |||| || |||||||||||||||||||||| ||| ||||| ||||||    
T  22828441 tgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggtagtatt 22828383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 118
Target Start/End: Complemental strand, 9220111 - 9220022
Alignment:
Q  29 attgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagtatta 118  Q
    ||||||||||||||||| | ||  ||| | ||||||||||| |||| ||  |||||| ||||||||||||||  || ||||| |||||||    
T  9220111 attgtatcaaaagtagtaagatttattaattgtcttgttttgtgtaaaatttcaaaaagtgacaattaaaaagaaacggaggtagtatta 9220022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 19093191 - 19093142
Alignment:
Q  61 tcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagg 110  Q
    ||||| |||||||| || |||||||||||||||||||||| ||| |||||    
T  19093191 tcttggtttatgtaaaatgtcaaaatgtgacaattaaaaaggaacggagg 19093142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 35232338 - 35232293
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaa 104  Q
    ||||||| ||| |||| || ||||||||||||||||||||||||||    
T  35232338 tgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaagaa 35232293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 9834484 - 9834540
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagta 115  Q
    ||||||| ||| |||| || |||||||||||||||||||||| ||| ||||| ||||    
T  9834484 tgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggtagta 9834540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 44013953 - 44013897
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagta 115  Q
    ||||||| ||| |||| || |||||||||||||||||||||| ||| ||||| ||||    
T  44013953 tgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggtagta 44013897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 44217910 - 44217966
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagta 115  Q
    ||||||| ||| |||| || |||||||||||||||||||||| ||| ||||| ||||    
T  44217910 tgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggtagta 44217966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 52677186 - 52677150
Alignment:
Q  79 gtcaaaatgtgacaattaaaaaagaatggagggagta 115  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  52677186 gtcaaaatgtgacaattaaaaaggaatggaggtagta 52677150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 2 - 116
Target Start/End: Original strand, 45317796 - 45317910
Alignment:
Q  2 aaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaa 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||     
T  45317796 aaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttggtttgtgtaaaaagtcaaaatgtgacaattaaaaag 45317895  T
Q  102 gaatggagggagtat 116  Q
    ||| || ||||||||    
T  45317896 gaacggcgggagtat 45317910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 5 - 115
Target Start/End: Original strand, 6661100 - 6661210
Alignment:
Q  5 gatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaa 104  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| ||| |||| ||||||||||||||||||||||||| |||    
T  6661100 gatattataggcaaaccataagttattgtatcaaaagtagtgaaatatatttagtgtgttggtttgtgtaaaaagtcaaaatgtgacaattaaaaaggaa 6661199  T
Q  105 tggagggagta 115  Q
    || ||||||||    
T  6661200 tgaagggagta 6661210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 5 - 115
Target Start/End: Original strand, 6741502 - 6741612
Alignment:
Q  5 gatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaa 104  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| ||| |||| ||||||||||||||||||||||||| |||    
T  6741502 gatattataggcaaaccataagttattgtatcaaaagtagtgaaatatatttagtgtgttggtttgtgtaaaaagtcaaaatgtgacaattaaaaaggaa 6741601  T
Q  105 tggagggagta 115  Q
    || ||||||||    
T  6741602 tgaagggagta 6741612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 13132213 - 13132101
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||| ||||||||||  |||||||||||||    
T  13132213 taaggatattataggcaaaacataagttattgcatcaaaagtagtgaaatacatttagtgtcttggtttgtgtaaaaagtcaaaa--tgacaattaaaaa 13132116  T
Q  101 agaatggagggagta 115  Q
     |||  |||||||||    
T  13132115 ggaacagagggagta 13132101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 40608181 - 40608280
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||| ||| |||| |||||||||||||||||||||||||    
T  40608181 taaggatattataggcaaaacataagttattgtatcaaaaatagtgaaatacatttagtatattggtttgtgtagaaagtcaaaatgtgacaattaaaaa 40608280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 30205599 - 30205713
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    |||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||| ||| |||| ||| |||||||||||||||| ||||    
T  30205599 taaggatattatagacaaaccataaattattgtatcaaaagtagtgaaatacatttagtgtcttggtttgtgtaaaaaatcaaaatgtgacaatt-aaaa 30205697  T
Q  101 agaatggagggagtat 116  Q
     ||| |||||||||||    
T  30205698 ggaacggagggagtat 30205713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 31760121 - 31760007
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||  |||||  |||||||| ||||||||| | |||||||||||||    
T  31760121 taaggatattatagtcaaaacataagttattgtatcaaaaatagtgaaatacattta--gtcttagtttatgtagaaagtcaaagtatgacaattaaaaa 31760024  T
Q  101 agaatggagggagtatt 117  Q
     ||| ||||||||||||    
T  31760023 ggaacggagggagtatt 31760007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 40602854 - 40602751
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||||||||||||| |||| |||| ||||| ||| ||||||||||||||||||||| ||||||| | ||| || ||||||||||| | |||||||||||    
T  40602854 taaggatattataggtaaaatataaattattatataaaaagtagtgaaatacatttaatgtcttggtatatatagaaagtcaaaatataacaattaaaaa 40602755  T
Q  101 agaa 104  Q
    ||||    
T  40602754 agaa 40602751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 18842672 - 18842786
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||| ||||||||  |||| | || ||||||||||||||||||| | ||  ||| | | ||||| ||| |||| || ||||||||||||||||||||||    
T  18842672 taaggttattatagtaaaaataaaaattattgtatcaaaagtagtaacatttattgattatcttgatttgtgtaaaatgtcaaaatgtgacaattaaaaa 18842771  T
Q  101 agaatggagggagta 115  Q
     ||| ||||| ||||    
T  18842772 ggaacggaggtagta 18842786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 14061225 - 14061130
Alignment:
Q  22 ataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagtatt 117  Q
    |||| ||||||||||||||||||| | ||  ||| | ||||||| ||| |||| || || |||| |||||||||||||| ||| ||||| ||||||    
T  14061225 ataaattattgtatcaaaagtagtaatatttattgattgtcttggtttgtgtaaaatgttaaaaagtgacaattaaaaaggaacggaggtagtatt 14061130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 117
Target Start/End: Original strand, 18291627 - 18291722
Alignment:
Q  22 ataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagtatt 117  Q
    |||| |||||| |||||||||||| | |  |||| | | ||||| ||| |||| || |||||||||||||||||||||| ||| ||||| ||||||    
T  18291627 ataacttattgcatcaaaagtagtaacaatcattgactatcttgatttttgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggtagtatt 18291722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 117
Target Start/End: Complemental strand, 2888539 - 2888449
Alignment:
Q  27 ttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagtatt 117  Q
    ||||||||||||||||||  | ||  ||| | ||||||| ||| |||| || || ||||||||||||||||||| ||| ||||| ||||||    
T  2888539 ttattgtatcaaaagtagcaacatttattgattgtcttggtttgtgtaaaatgttaaaatgtgacaattaaaaaggaacggaggtagtatt 2888449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 14263745 - 14263795
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggag 109  Q
    ||||||| ||| |||| || |||||||||||||||||||||||||| ||||    
T  14263745 tgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaagaacggag 14263795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 26062910 - 26062959
Alignment:
Q  61 tcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagg 110  Q
    ||||| ||| |||| || |||||||||||||||||||||| |||||||||    
T  26062910 tcttgatttgtgtaaaatgtcaaaatgtgacaattaaaaaggaatggagg 26062959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 14228361 - 14228305
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagta 115  Q
    ||||||| ||| |||| || |||||||||||||||||||||| ||| ||||| ||||    
T  14228361 tgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaatgaacggaggtagta 14228305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 15596547 - 15596603
Alignment:
Q  61 tcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagtatt 117  Q
    ||||| ||| |||| || |||||||||||||||||||||| ||| ||||| ||||||    
T  15596547 tcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggtagtatt 15596603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 35052254 - 35052310
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagta 115  Q
    ||||||| ||| |||| || |||||||||||||||||||||| ||| ||||| ||||    
T  35052254 tgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggtagta 35052310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 9e-42; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 52759171 - 52759285
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    |||||||||||||   ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  52759171 taaggatattataattaaaacataagttattgtataaaaagtagtgaaatacatttagtgtcttggtttgtgtataaagtcaaaatgtgacaattaaaaa 52759270  T
Q  101 agaatggagggagta 115  Q
    |||| ||||||||||    
T  52759271 agaacggagggagta 52759285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 52825413 - 52825513
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||  ||| |||| |||||||||||||||||||||||||    
T  52825413 taaggatattataggcaaaacataagttattgcatcaaaagtaatgaaatacatttagtatcttaatttgtgtaaaaagtcaaaatgtgacaattaaaaa 52825512  T
Q  101 a 101  Q
    |    
T  52825513 a 52825513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 6931257 - 6931355
Alignment:
Q  2 aaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||| ||| ||  | || ||||| |||||||||||||||||||    
T  6931257 aaggatattataggcaaaacataaattattgtatcaaaagtattgaaatatatttagtgtattggttggtataaaaagttaaaatgtgacaattaaaaa 6931355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 22154694 - 22154632
Alignment:
Q  39 aagtagtgaaatacatttagtgtcttgttttatgt-ataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||||||||||||||||||||||||  ||| ||| | |||||||||||||||||||||||||    
T  22154694 aagtagtgaaatacatttagtgtcttagtttgtgtaaaaaagtcaaaatgtgacaattaaaaa 22154632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 40926826 - 40926732
Alignment:
Q  22 ataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagtat 116  Q
    |||| ||||||||||||||||||| | |   ||| | ||| ||| |||||||| || |||||||||||||||||||||||||| ||||| |||||    
T  40926826 ataacttattgtatcaaaagtagtaacaattattgattgtattggtttatgtaaaatgtcaaaatgtgacaattaaaaaagaacggaggtagtat 40926732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 8973539 - 8973447
Alignment:
Q  7 tattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||||||| |||| |||| || |||||| ||||||||| |||   ||||  ||||||| |||||||| ||||||||||| |||||||||||||    
T  8973539 tattataggaaaaagataaattgttgtataaaaagtagtaaaagt-atttgttgtcttgatttatgtaaaaagtcaaaatatgacaattaaaaa 8973447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 31487873 - 31487764
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||| ||||||||  |||| | || ||||||||||||||||||  | ||  ||| | ||||||| ||| |||| || ||||||||||||||||||||||    
T  31487873 taaggttattatagtaaaaatagaaattattgtatcaaaagtagcaatatttattgattgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaa 31487774  T
Q  101 agaatggagg 110  Q
     ||| |||||    
T  31487773 ggaacggagg 31487764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 12231107 - 12231051
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagta 115  Q
    ||||||| |||||||| || |||||||||||||||||||||| ||| ||||| ||||    
T  12231107 tgtcttggtttatgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggtagta 12231051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 2572114 - 2572212
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||| ||||||||  |||| |||| ||||| ||||||||||||| ||| | ||||| | ||||| | | |||| |||||||||||| ||||||||||||    
T  2572114 taaggttattatagaaaaaagataatttattatatcaaaagtagtaaaa-atatttattatcttgatatgtgtaaaaagtcaaaatgagacaattaaaaa 2572212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 12721611 - 12721682
Alignment:
Q  29 attgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||||||||||||||| | ||  ||||| ||||||| |||||||| || || |||| ||||||||||||||    
T  12721611 attgtatcaaaagtagtaatatttatttattgtcttggtttatgtaaaatgttaaaaagtgacaattaaaaa 12721682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 45230677 - 45230759
Alignment:
Q  17 aaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    |||| |||| || |||||||||||||||| |||   ||||  ||||||| |||||||| ||||||||||||| |||||||||||    
T  45230677 aaaagataaattgttgtatcaaaagtagtaaaagt-atttgttgtcttggtttatgtaaaaagtcaaaatgtaacaattaaaaa 45230759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 10630554 - 10630667
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||| ||||||||  |||| |||| || |||||||||||||||| |||   ||||  ||||||  |||||||| ||||||||||||  |||||||||||    
T  10630554 taaggttattatagaaaaaagataatttgttgtatcaaaagtagtaaaagt-atttgttgtcttaatttatgtaaaaagtcaaaatgaaacaattaaaaa 10630652  T
Q  101 agaatggagggagta 115  Q
     |||  |||||||||    
T  10630653 ggaaccgagggagta 10630667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 20605660 - 20605602
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagtatt 117  Q
    ||||||| ||| |||| || |||||||| ||||||||||||| ||||||||| ||||||    
T  20605660 tgtcttggtttgtgtaaaatgtcaaaatatgacaattaaaaatgaatggaggtagtatt 20605602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 29830954 - 29831012
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagtatt 117  Q
    ||||||| ||| |||| || |||||||||||||||||||||| ||| ||||| ||||||    
T  29830954 tgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggtagtatt 29831012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 35531331 - 35531273
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagtatt 117  Q
    ||||||| ||| |||| || |||||||||||||||||||||| ||| ||||| ||||||    
T  35531331 tgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggtagtatt 35531273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 109
Target Start/End: Complemental strand, 37609340 - 37609290
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggag 109  Q
    ||||||| |||||||| || |||||||||||||||||||||| ||| ||||    
T  37609340 tgtcttgatttatgtaaaatgtcaaaatgtgacaattaaaaaggaacggag 37609290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 8464293 - 8464252
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||||| |||||||| || ||||||||||||||||||||||    
T  8464293 tgtcttggtttatgtaaaatgtcaaaatgtgacaattaaaaa 8464252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 9127838 - 9127911
Alignment:
Q  27 ttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||||||||||||||||| | ||  ||| | ||||||| ||| |||| || ||||||| ||||||||||||||    
T  9127838 ttattgtatcaaaagtagtaacatttattgaatgtcttggtttgtgtaaaatgtcaaaaagtgacaattaaaaa 9127911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 2059828 - 2059792
Alignment:
Q  79 gtcaaaatgtgacaattaaaaaagaatggagggagta 115  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  2059828 gtcaaaatgtgacaattaaaaaggaatggaggtagta 2059792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 13507971 - 13508027
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagta 115  Q
    ||||||| |||||||| || |||||||||||| ||||||||| ||| ||||| ||||    
T  13507971 tgtcttgatttatgtaaaatgtcaaaatgtgataattaaaaaggaacggaggtagta 13508027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 13515159 - 13515215
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagta 115  Q
    ||||||| |||||||| || |||||||||||| ||||||||| ||| ||||| ||||    
T  13515159 tgtcttgatttatgtaaaatgtcaaaatgtgataattaaaaaggaacggaggtagta 13515215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 13566880 - 13566936
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagta 115  Q
    ||||||| ||| |||| || |||||||||||||||||||||| ||| ||||| ||||    
T  13566880 tgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggtagta 13566936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 36318521 - 36318609
Alignment:
Q  27 ttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagta 115  Q
    ||||||||||||||||||||| ||  ||| | ||| ||| ||| |||| |  ||||||| |||||||||||||| ||| ||||| ||||    
T  36318521 ttattgtatcaaaagtagtgacatttattgaatgtattggtttgtgtaaattgtcaaaaagtgacaattaaaaaggaacggaggtagta 36318609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 43500707 - 43500763
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagta 115  Q
    ||||||| ||| |||| || |||||||||||||||||||||| ||| ||||| ||||    
T  43500707 tgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggtagta 43500763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 35077530 - 35077644
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||| ||||||||||| |||||||||||||    
T  35077530 taaggatattataggcaaaacataagttattgcatcaaaagtagtgaaatacatttagtgtcttggtttgtgtaaaaagtcaaaatatgacaattaaaaa 35077629  T
Q  101 agaatggagggagta 115  Q
     |||  |||||||||    
T  35077630 ggaacagagggagta 35077644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 47843946 - 47843832
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||    
T  47843946 taaggatattataggcaaaacacaagttattgtatcaaatgtagtgaaatacatttagtgtcttgatttatgtaaaaaatcaaaatgtgacaattaaaaa 47843847  T
Q  101 agaatggagggagta 115  Q
     |||  |||||||||    
T  47843846 ggaacagagggagta 47843832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 35458607 - 35458508
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||| ||||| |||||||||||||||||||    
T  35458607 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacaattagtgtcttggtttgtgtaaaaagttaaaatgtgacaattaaaaa 35458508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 53290864 - 53290749
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    |||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||| || ||| |||| ||| ||||||| |||||||||||||    
T  53290864 taaggatattatagacgaaccataagttattgtatcaaaagtagtgaaatacatttagtgtcatggtttgtgtaaaaaatcaaaatatgacaattaaaaa 53290765  T
Q  101 agaatggagggagtat 116  Q
     ||| ||||| |||||    
T  53290764 ggaacggaggaagtat 53290749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 28226568 - 28226675
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||          |||| ||| |||| |||||||||||||||||||||||||    
T  28226568 taaggatattataggcaaaacataagttattgtatcaaaagcagtgaaata---------acttggtttgtgtaaaaagtcaaaatgtgacaattaaaaa 28226658  T
Q  101 agaatggagggagtatt 117  Q
     ||| ||| | ||||||    
T  28226659 ggaacggatgaagtatt 28226675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 24569693 - 24569795
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagt--gtct-tgttttatgtataaagtcaaaatgtgacaattaa 97  Q
    |||| |||||||||||||||||||| ||||||||||||||||| ||||||| ||||| |  || | || |||||||| ||||||||||||| ||||||||    
T  24569693 taagaatattataggcaaaacataacttattgtatcaaaagtaatgaaatatatttatttagtatctggtttatgtaaaaagtcaaaatgtaacaattaa 24569792  T
Q  98 aaa 100  Q
    |||    
T  24569793 aaa 24569795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 34750798 - 34750914
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||| ||||||||| |||| |||| || |||||||||||||||| |||   ||||  ||||||| ||| |||| |||| ||||||| ||||||||||||    
T  34750798 taaggttattataggaaaaagataatttgttgtatcaaaagtagtaaaagt-atttgttgtcttgatttgtgtaaaaagacaaaatgagacaattaaaaa 34750896  T
Q  101 agaatggagggagtatta 118  Q
     |||| ||||||||||||    
T  34750897 ggaatagagggagtatta 34750914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 26748496 - 26748594
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||| ||||||||  |||| |||| || |||||||||||||||| |||  |||||  ||||||| ||| |||| |||||||||||||||||||||||||    
T  26748496 taaggttattatagaaaaaagataaattgttgtatcaaaagtagtaaaag-catttgttgtcttgatttgtgtaaaaagtcaaaatgtgacaattaaaaa 26748594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 24141 - 24050
Alignment:
Q  27 ttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagtatta 118  Q
    ||||||||||||||||||| | ||  ||| | ||||||| |||||||| || |||| || |||||| ||||||| |||| ||||||||||||    
T  24141 ttattgtatcaaaagtagtaatatttattaaatgtcttggtttatgtaaaatgtcacaaagtgacacttaaaaaggaatagagggagtatta 24050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 33491242 - 33491128
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||| ||||||||  |||  |||| |||||| |||||||||||| | |  |||| | | ||||  |||||||| || ||||||||||||||||||||||    
T  33491242 taaggttattatagtaaaagtataacttattgcatcaaaagtagtaacaatcattgactatcttagtttatgtaaaatgtcaaaatgtgacaattaaaaa 33491143  T
Q  101 agaatggagggagta 115  Q
     ||| ||||| ||||    
T  33491142 ggaacggaggtagta 33491128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 41168959 - 41169004
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaa 104  Q
    ||||||| ||| |||| || ||||||||||||||||||||||||||    
T  41168959 tgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaagaa 41169004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 54898131 - 54898090
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||||| |||||||| || ||||||||||||||||||||||    
T  54898131 tgtcttggtttatgtaaaatgtcaaaatgtgacaattaaaaa 54898090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 41425798 - 41425886
Alignment:
Q  27 ttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagta 115  Q
    ||||||||||||||||||  | ||  ||| | ||||||| ||| |||| || || ||||||||||||||||||| ||| ||||| ||||    
T  41425798 ttattgtatcaaaagtagcaacatttattgattgtcttggtttgtgtaaaatgttaaaatgtgacaattaaaaaggaacggaggtagta 41425886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 42671915 - 42671879
Alignment:
Q  79 gtcaaaatgtgacaattaaaaaagaatggagggagta 115  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  42671915 gtcaaaatgtgacaattaaaaaagaacggaggtagta 42671879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 43775467 - 43775379
Alignment:
Q  27 ttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagta 115  Q
    |||||| |||||||||||| | |  |||| | | ||||| |||||||| || |||||||||||| ||||||||| ||| ||||| ||||    
T  43775467 ttattgcatcaaaagtagtaacaatcattgactatcttggtttatgtaaaatgtcaaaatgtgaaaattaaaaaggaacggaggtagta 43775379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 45101403 - 45101347
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagta 115  Q
    ||||||| ||| |||| || |||||||||||||||||||||| ||| ||||| ||||    
T  45101403 tgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggtagta 45101347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 54106464 - 54106520
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagta 115  Q
    ||||||| |||||||| || |||||||||| ||||||||||| ||| ||||| ||||    
T  54106464 tgtcttggtttatgtaaaatgtcaaaatgtaacaattaaaaaggaacggaggtagta 54106520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 9601993 - 9601879
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||| |||| |||||||||||||||||||||||||    
T  9601993 taaggatattataagcaaaccataagttattgtatcaaaagtagtgaaatacatttaatgtcttggtttgtgtaaaaagtcaaaatgtgacaattaaaaa 9601894  T
Q  101 agaatggagggagta 115  Q
     ||| ||| ||||||    
T  9601893 ggaacggatggagta 9601879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 9829564 - 9829450
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||| |||| |||||||||||||||||||||||||    
T  9829564 taaggatattataagcaaaccataagttattgtatcaaaagtagtgaaatacatttaatgtcttggtttgtgtaaaaagtcaaaatgtgacaattaaaaa 9829465  T
Q  101 agaatggagggagta 115  Q
     ||| ||| ||||||    
T  9829464 ggaacggatggagta 9829450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 35860108 - 35860216
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    |||| |||||||||  ||| |||||||||||| |||||||||||||||||||||||||||||||| ||| |||| ||||||||||||| |||||||||||    
T  35860108 taagaatattatagaaaaaccataagttattgcatcaaaagtagtgaaatacatttagtgtcttggtttgtgtaaaaagtcaaaatgtaacaattaaaaa 35860207  T
Q  101 agaatggag 109  Q
     ||| ||||    
T  35860208 ggaacggag 35860216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 33072188 - 33072287
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||| | ||| ||| |||| ||||||||||| | |||||||||||    
T  33072188 taaggatattataggcaaaacataaattattgtatcaaaaatagtaaaatacatttagtatattggtttgtgtaaaaagtcaaaatataacaattaaaaa 33072287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 22786023 - 22786120
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaa 99  Q
    ||||| ||||||||| |||| |||| || |||||||||||||||| |||   ||||  ||| ||| ||| |||| ||||||||||||||||||||||||    
T  22786023 taaggttattataggaaaaagataaattgttgtatcaaaagtagt-aaaagtatttgttgttttggtttgtgtaaaaagtcaaaatgtgacaattaaaa 22786120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 47408282 - 47408372
Alignment:
Q  27 ttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagtatt 117  Q
    ||||||||||||||||||| | ||  ||| | ||||||| ||| |||| || ||||||| |||||||||||||| ||| ||||| ||||||    
T  47408282 ttattgtatcaaaagtagtaacatttattgaatgtcttggtttgtgtaaaatgtcaaaaagtgacaattaaaaaggaacggaggtagtatt 47408372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 5732147 - 5732058
Alignment:
Q  27 ttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagtat 116  Q
    |||||| |||||||||||| | |  |||| | | ||||| |||||||| || |||||||||||||||||||||| ||| ||||| |||||    
T  5732147 ttattgcatcaaaagtagtaacaatcattgactatcttggtttatgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggtagtat 5732058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 33173976 - 33174064
Alignment:
Q  27 ttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagta 115  Q
    ||||||||||||||||||| | |  |||| | | | ||| |||||||| || |||||||||||||||||||||| ||| ||||| ||||    
T  33173976 ttattgtatcaaaagtagtaacaatcattgactattttggtttatgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggtagta 33174064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 6799620 - 6799679
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagtatta 118  Q
    ||||||| |||||||| || ||||| |||||||||||||||| ||| ||||| |||||||    
T  6799620 tgtcttggtttatgtaaaatgtcaacatgtgacaattaaaaaggaacggaggtagtatta 6799679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 17896533 - 17896476
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagtat 116  Q
    ||||||| ||| |||| || |||||||||||||||||||||| ||| ||||| |||||    
T  17896533 tgtcttgatttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggtagtat 17896476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 33099877 - 33099820
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagtat 116  Q
    ||||||| ||| |||| ||  ||||||||||||||||||||||||| ||||| |||||    
T  33099877 tgtcttggtttgtgtaaaatatcaaaatgtgacaattaaaaaagaacggaggtagtat 33099820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 33921867 - 33921758
Alignment:
Q  8 attataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatgg 107  Q
    |||||||  |||| |||| |||||| |||||||||||| | |  |||| | | ||||  |||||||| || || ||||||||||||||||||| ||| ||    
T  33921867 attatagtaaaaatataatttattgcatcaaaagtagtaacaatcattgactatcttagtttatgtaaaatgttaaaatgtgacaattaaaaaggaacgg 33921768  T
Q  108 agggagtatt 117  Q
    ||| ||||||    
T  33921767 aggtagtatt 33921758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 41675229 - 41675188
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||||| |||||||| || ||||||||||||||||||||||    
T  41675229 tgtcttggtttatgtaaaatgtcaaaatgtgacaattaaaaa 41675188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 46715354 - 46715313
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||||| ||| |||| |||||||||||||||||||||||||    
T  46715354 tgtcttgatttgtgtaaaaagtcaaaatgtgacaattaaaaa 46715313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 8265150 - 8265206
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagta 115  Q
    ||||||| ||| |||| ||  ||||||||||||||||||||||||| ||||| ||||    
T  8265150 tgtcttggtttgtgtaaaatttcaaaatgtgacaattaaaaaagaacggaggtagta 8265206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 36298267 - 36298171
Alignment:
Q  8 attataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaa 104  Q
    |||||||  |||| |||| |||||| |||||||||||| | |   ||| | ||| ||| ||| |||| || ||||||||||||||||||||||||||    
T  36298267 attatagtaaaaatataacttattgcatcaaaagtagtaacaattattgattgttttgatttgtgtaaaatgtcaaaatgtgacaattaaaaaagaa 36298171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 36173202 - 36173316
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| ||| ||| |||| |||||||||||||||||||||||||    
T  36173202 taaggatattataggtaaaccataaattattgtatcaaaagtagtgaaatacatttagtgttttggtttgtgtaaaaagtcaaaatgtgacaattaaaaa 36173301  T
Q  101 agaatggagggagta 115  Q
    |||| ||| ||||||    
T  36173302 agaacggaaggagta 36173316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 33947529 - 33947412
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| | ||| ||| |||| ||| |||||||||||||||||||||    
T  33947529 taaggatattataggcaaaacataaattattgtatcaaaaatagtgaaatacatttagtattttggtttgtgtagaaaatcaaaatgtgacaattaaaaa 33947430  T
Q  101 agaatggagggagtatta 118  Q
      ||  ||||||||||||    
T  33947429 gaaactgagggagtatta 33947412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 42263454 - 42263338
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    |||||||||||| | |||| |||||||||||||||||||| |||||||||||||||| ||||||| |||||| | ||||| |||||||||||||||||||    
T  42263454 taaggatattattgacaaaccataagttattgtatcaaaaatagtgaaatacatttaatgtcttgatttatgcaaaaagttaaaatgtgacaattaaaaa 42263355  T
Q  101 agaatggagggagtatt 117  Q
    |||| |||  |||||||    
T  42263354 agaacggaaagagtatt 42263338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 838166 - 838071
Alignment:
Q  5 gatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||| |||| ||| |||||||| ||||||||||||    
T  838166 gatattataggcaaaacataagttattgcatcaaaagtagtgaaatgcatttagtgtcttggtttgtgtaaaaaatcaaaatgcgacaattaaaaa 838071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 37354136 - 37354230
Alignment:
Q  5 gatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaa 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||| ||| |||| ||| | ||||||||||||||||||    
T  37354136 gatattataggcaaaacataagttattgtatcaaaagtagtgaaatataattggtgtcttgatttgtgtaaaaaattaaaatgtgacaattaaaa 37354230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 42089054 - 42089128
Alignment:
Q  25 agttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaa 99  Q
    |||||| |||||||||||||||||||||||||||||||||| ||| |||| ||||| |||||| |||||||||||    
T  42089054 agttatcgtatcaaaagtagtgaaatacatttagtgtcttggtttgtgtaaaaagttaaaatgagacaattaaaa 42089128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 25787528 - 25787586
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagtatt 117  Q
    ||||||| ||| |||| ||||||||||||||||||||||||| |||  |||||||||||    
T  25787528 tgtcttggtttgtgtaaaaagtcaaaatgtgacaattaaaaaggaacagagggagtatt 25787586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 11222390 - 11222301
Alignment:
Q  27 ttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagtat 116  Q
    |||||| |||||||||||| | |  |||| | | ||||| |||||||| || |||||||||||||||||||||| ||| ||||| |||||    
T  11222390 ttattgcatcaaaagtagtaacaatcattgactatcttggtttatgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggtagtat 11222301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 29056188 - 29056252
Alignment:
Q  34 atcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaa 98  Q
    |||||||||||| ||||| ||||  ||||||| ||| |||| |||||||||| ||||||||||||    
T  29056188 atcaaaagtagtaaaatatatttgttgtcttggtttgtgtagaaagtcaaaaagtgacaattaaa 29056252  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 36404941 - 36404833
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||| ||||||||  |||| |||| |||||| |||||||||||| | |  |||| | | ||||| || ||||| ||  |||||||||||||||||||||    
T  36404941 taaggttattatagtaaaaatataacttattgcatcaaaagtagtaacaatcattgactatcttggttcatgtaaaatatcaaaatgtgacaattaaaaa 36404842  T
Q  101 agaatggag 109  Q
     ||||||||    
T  36404841 tgaatggag 36404833  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 114
Target Start/End: Original strand, 45065248 - 45065328
Alignment:
Q  34 atcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagt 114  Q
    |||||||||||| ||| | ||||  ||||||| ||| |||| ||| |  ||| ||||||||||||||||||||||||||||    
T  45065248 atcaaaagtagtaaaaaatatttgttgtcttggtttgtgtaaaaaattcaaaagtgacaattaaaaaagaatggagggagt 45065328  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 30264644 - 30264593
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagg 110  Q
    ||||||| |||||||| || |||||||||||||||||||||| ||| |||||    
T  30264644 tgtcttggtttatgtaaaatgtcaaaatgtgacaattaaaaaggaacggagg 30264593  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 115
Target Start/End: Original strand, 37077314 - 37077427
Alignment:
Q  2 aaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataa-agtcaaaatgtgacaattaaaaa 100  Q
    |||| ||||||||  |||| |||| ||||||||| ||||||||| ||||  ||||  | ||||| ||| |||| || | |||||| ||||||||||||||    
T  37077314 aaggttattatagaaaaaagataaattattgtataaaaagtagtaaaatgtatttgttatcttggtttgtgtaaaagactcaaaa-gtgacaattaaaaa 37077412  T
Q  101 agaatggagggagta 115  Q
     ||||||||||||||    
T  37077413 ggaatggagggagta 37077427  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 928068 - 928031
Alignment:
Q  67 tttatgtataaagtcaaaatgtgacaattaaaaaagaa 104  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  928068 tttatgtaaaaagtcaaaatatgacaattaaaaaagaa 928031  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 108
Target Start/End: Original strand, 4883812 - 4883853
Alignment:
Q  67 tttatgtataaagtcaaaatgtgacaattaaaaaagaatgga 108  Q
    |||||||| || |||||||||||||||||||||| |||||||    
T  4883812 tttatgtaaaatgtcaaaatgtgacaattaaaaaggaatgga 4883853  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 10812400 - 10812457
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagtat 116  Q
    ||||||| ||| |||| || |||||||||||||||||||||| ||| ||||| |||||    
T  10812400 tgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggtagtat 10812457  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 118
Target Start/End: Original strand, 13215564 - 13215653
Alignment:
Q  29 attgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagtatta 118  Q
    ||||||||||||||||| | ||  ||| ||||| ||| ||| |||| || ||||||| || ||||||||||| ||| ||||| |||||||    
T  13215564 attgtatcaaaagtagtaacatttattgagtgtattggtttgtgtaaaatgtcaaaaagtaacaattaaaaaggaacggaggtagtatta 13215653  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 14295799 - 14295742
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagtat 116  Q
    ||||||| ||| |||| || |||||||||||||||||||||| |||| |||| |||||    
T  14295799 tgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaattgaggtagtat 14295742  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 35158425 - 35158352
Alignment:
Q  27 ttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||||||||||||||||| | ||  ||| | ||||||| || ||||| || ||||||| ||||||||||||||    
T  35158425 ttattgtatcaaaagtagtaatatttattgaatgtcttggttcatgtaaaatgtcaaaaagtgacaattaaaaa 35158352  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 36375774 - 36375831
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagtat 116  Q
    ||||||| ||| |||| || |||||||||||||||||||||| ||| ||||| |||||    
T  36375774 tgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggtagtat 36375831  T

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Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 37093650 - 37093707
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagtat 116  Q
    ||||||| ||| |||| || |||||||||||||||||||||| | | |||||||||||    
T  37093650 tgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggtacggagggagtat 37093707  T

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Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 44360597 - 44360690
Alignment:
Q  22 ataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagta 115  Q
    |||| |||||| |||||||||||| | |   ||| | ||||||| ||| |||| || |||||||||||||||||||||| ||| ||||| ||||    
T  44360597 ataacttattgcatcaaaagtagtaacaattattgattgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggtagta 44360690  T

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Target: scaffold0002 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 492289 - 492173
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    |||||||||||| | |||| |||||||||||||||||||| |||||||||||||||| ||||||| |||||| | ||||| |||||||||||||||||||    
T  492289 taaggatattattgacaaaccataagttattgtatcaaaaatagtgaaatacatttaatgtcttgatttatgcaaaaagttaaaatgtgacaattaaaaa 492190  T
Q  101 agaatggagggagtatt 117  Q
    |||| |||  |||||||    
T  492189 agaacggaaagagtatt 492173  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 26485757 - 26485666
Alignment:
Q  27 ttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagtatta 118  Q
    ||||||||||||||||||| | ||  ||| | ||||||| |||||||| || ||||||| |||||||||||||| |||  |||| |||||||    
T  26485757 ttattgtatcaaaagtagtaacatttattgaatgtcttggtttatgtaaaatgtcaaaaagtgacaattaaaaaggaacagaggtagtatta 26485666  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 23777465 - 23777538
Alignment:
Q  27 ttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||||||||||||||||| | ||  ||||| ||||||| ||| |||| || ||||||| ||||||||||||||    
T  23777465 ttattgtatcaaaagtagtaacatttatttaatgtcttggtttgtgtaaaatgtcaaaaagtgacaattaaaaa 23777538  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 11000907 - 11000809
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||||||||||||| |||| |||| || ||||||||||| |||| |||   ||||  ||||||  ||| |||| ||| |||||||||||||||||||||    
T  11000907 taaggatattataggaaaaagataaattgttgtatcaaaaatagt-aaaagtatttgttgtcttagtttgtgtaaaaaatcaaaatgtgacaattaaaaa 11000809  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 15432814 - 15432912
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||| ||||||||| |||| |||| || |||||||||||||||| |||   ||||  ||||||  ||| |||| ||||||||||| |||||||||||||    
T  15432814 taaggttattataggaaaaagataaattgttgtatcaaaagtagt-aaaagtatttgttgtcttagtttgtgtagaaagtcaaaatatgacaattaaaaa 15432912  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 32251049 - 32250951
Alignment:
Q  1 taaggatattataggcaaaacataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||| ||||||||| |||| |||| || ||| |||||||||||| |||   ||||  ||||||| ||| |||| ||||||||||||||| |||||||||    
T  32251049 taaggttattataggaaaaagataaattcttgcatcaaaagtagtaaaagt-atttgttgtcttggtttgtgtaaaaagtcaaaatgtgataattaaaaa 32250951  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 115
Target Start/End: Complemental strand, 1751469 - 1751415
Alignment:
Q  61 tcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagta 115  Q
    ||||| ||| |||| || |||||||||||||||||||||||||| ||||| ||||    
T  1751469 tcttgatttgtgtaaaatgtcaaaatgtgacaattaaaaaagaacggaggtagta 1751415  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 22050212 - 22050305
Alignment:
Q  22 ataagttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagta 115  Q
    |||| |||||| |||||||||||| | |   ||| | ||||||| ||| |||| || |||||||||||||||||||||| ||| ||||| ||||    
T  22050212 ataacttattgcatcaaaagtagtaacaattattgattgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggtagta 22050305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 373924 - 373964
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaa 99  Q
    ||||||| |||||||| || |||||||||||||||||||||    
T  373924 tgtcttggtttatgtaaaatgtcaaaatgtgacaattaaaa 373964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 8355 - 8413
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagtatt 117  Q
    ||||||| ||| |||| || |||||||||||||||||||||| ||| ||||| ||||||    
T  8355 tgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggtagtatt 8413  T

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Target: scaffold0135 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 118
Target Start/End: Complemental strand, 30762 - 30673
Alignment:
Q  29 attgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagtatta 118  Q
    ||||||||||||||||| | ||  ||| | ||||||||||| |||| ||  |||||| ||||||||||||||  || ||||| |||||||    
T  30762 attgtatcaaaagtagtaagatttattaattgtcttgttttgtgtaaaatttcaaaaagtgacaattaaaaagaaacggaggtagtatta 30673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 89371 - 89416
Alignment:
Q  59 tgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaa 104  Q
    ||||||| ||| |||| || ||||||||||||||||||||||||||    
T  89371 tgtcttgatttgtgtaaaatgtcaaaatgtgacaattaaaaaagaa 89416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 419564 - 419491
Alignment:
Q  27 ttattgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaa 100  Q
    ||||||||||||||||||| | ||  ||| | ||||||| |||||||| || |||| || ||||||||||||||    
T  419564 ttattgtatcaaaagtagtaacatttattgattgtcttggtttatgtaaaatgtcacaaagtgacaattaaaaa 419491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 147197 - 147109
Alignment:
Q  29 attgtatcaaaagtagtgaaatacatttagtgtcttgttttatgtataaagtcaaaatgtgacaattaaaaaagaatggagggagtatt 117  Q
    ||||||||||||||||| | ||  ||| | ||| ||| ||| |||| || ||||||| |||||||||||||| ||| ||||| ||||||    
T  147197 attgtatcaaaagtagtaacatttattaattgttttgatttgtgtaaaatgtcaaaaagtgacaattaaaaaggaacggaggtagtatt 147109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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