View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4138_low_1 (Length: 537)
Name: NF4138_low_1
Description: NF4138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4138_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 461; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 21 - 529
Target Start/End: Complemental strand, 30569453 - 30568941
Alignment:
| Q |
21 |
atagataagttgaattatttacaattcctgcaatatcatagaatcatatagttatattctataaaaccctagccatccatttctaatcatacagtaaaag |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30569453 |
atagataagttgaattatttacaattcctgcaatatcatagaatcatatagttatattctataaaaccctagccatccatttctaatcatacagtaaaag |
30569354 |
T |
|
| Q |
121 |
aataaacaatagatataattttgttcatttcttgaaaactaaggacatgcttactttgtgaaaatggtttttgttttatttcaggttatgttcattttaa |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
30569353 |
aataaacaatagatataattttgttcatttcttgaaaactaaggacatgcttactttgtgaaaatggtttt-gttttaattcaggttatgttcattttaa |
30569255 |
T |
|
| Q |
221 |
cttgctaataagaaga---gatacttttgaagtgatttattgtgatcgatgcaaggtaatttgttatctaaagacgttgcattttaggaaataatgaaaa |
317 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30569254 |
cttgctaataagaagaagagatacttttgaagtgatttattgtgatcgatgcaaggtaatttgttatctaaagacgttgcattttcggaaataatgaaaa |
30569155 |
T |
|
| Q |
318 |
caattatgt--tgacatttttgttgtttctggaaatgcttgaaaattgttcacctcaagagtcttattttctattatttgatagcatgaaactacatata |
415 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30569154 |
caattatgtgttgacatttttgttgtttctggaaatgcttgaaaattgttcacctcaagagtcttattttctattatttgatagcatgaaattacatata |
30569055 |
T |
|
| Q |
416 |
taatcacaaggtaaatataacttacatcattctagtagcagcatctttgtcttttcatgtctgtatggcgtcatcactgcgactgaagatatccgtatca |
515 |
Q |
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| T |
30569054 |
taatcacaaggtaaatataacttacatcattctagtagcagcatcgttgtcttttcatgtctgtatggcgtcaccactgcgactgaagatatccgtatca |
30568955 |
T |
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| Q |
516 |
tgcagtttcatctc |
529 |
Q |
| |
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|||||||||||||| |
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| T |
30568954 |
tgcagtttcatctc |
30568941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 21 - 395
Target Start/End: Complemental strand, 30572987 - 30572616
Alignment:
| Q |
21 |
atagataagttgaattatttacaattcctgcaatatcatagaatcatatagttatattctataaaaccctagccatccatttctaatcatacagtaaaag |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30572987 |
atagataagttgaattatttacaattcctgcaatatcatagaatcatatagttatattctataaaaccctagccatcaatttctaatcatacagtaaaag |
30572888 |
T |
|
| Q |
121 |
aataaacaatagatataattttgttcatttcttgaaaactaaggacatgcttactttgtgaaaatggtttttgttttatttcaggttatgttcattttaa |
220 |
Q |
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| T |
30572887 |
aataaacaatagatataattttgttcatttcttgaaaactaaggacctgcttactttgtaaaaatgtcttttgtttta------attatgttcattttaa |
30572794 |
T |
|
| Q |
221 |
cttgctaat---aagaagagatacttttgaagtgatttattgtgatcgatgcaaggtaatttgttatctaaagacgttgcattttaggaaataatgaaaa |
317 |
Q |
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|||| |||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||| |||||||||||||| |
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| T |
30572793 |
cttggtaataagaagaagagagacttttgaagtgatttattgtgattgatgcaaggtaatttgttatctaaagatgatgcattttcggaaataatgaaaa |
30572694 |
T |
|
| Q |
318 |
caattatgttgacatttttgttgtttctggaaatgcttgaaaattgttcacctcaagagtcttattttctattatttg |
395 |
Q |
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|| ||| |||||||||| |||||||||||||||||| | |||||| |||| ||||||||||| |||||||||||||| |
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| T |
30572693 |
cagttacattgacattttcgttgtttctggaaatgctaggaaattgatcacttcaagagtctttttttctattatttg |
30572616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 391 - 529
Target Start/End: Complemental strand, 30572596 - 30572458
Alignment:
| Q |
391 |
atttgatagcatgaaactacatatataatcacaaggtaaatataacttacatcattctagtagcagcatctttgtcttttcatgtctgtatggcgtcatc |
490 |
Q |
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||||| || ||||||||||||||| |||||||||||||| || || ||| | || ||||||||||||||| |||||||||||||||||||||| ||| | |
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| T |
30572596 |
atttggtaacatgaaactacatatttaatcacaaggtaagtaaaagttataccaatctagtagcagcatcgctgtcttttcatgtctgtatggcatcacc |
30572497 |
T |
|
| Q |
491 |
actgcgactgaagatatccgtatcatgcagtttcatctc |
529 |
Q |
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|||||||||| |||||| ||||||||| ||||||||||| |
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| T |
30572496 |
actgcgactggagatattcgtatcatgaagtttcatctc |
30572458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 380
Target Start/End: Original strand, 16265429 - 16265514
Alignment:
| Q |
295 |
tgcattttaggaaataatgaaaacaattatgttgacatttttgttgtttctggaaatgcttgaaaattgttcacctcaagagtctt |
380 |
Q |
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||||||| ||||||||||||||| | ||| |||||||||| |||||||||||||||| || || ||||||| ||||||||||| |
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| T |
16265429 |
tgcatttcaggaaataatgaaaatagctattttgacattttcattgtttctggaaatgcaagacaaatgttcacttcaagagtctt |
16265514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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