View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4138_low_3 (Length: 291)

Name: NF4138_low_3
Description: NF4138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4138_low_3
NF4138_low_3
[»] chr2 (3 HSPs)
chr2 (18-279)||(41957931-41958201)
chr2 (18-181)||(5599003-5599164)
chr2 (49-119)||(5597488-5597558)
[»] chr1 (1 HSPs)
chr1 (18-181)||(25548924-25549085)
[»] chr8 (2 HSPs)
chr8 (18-157)||(40637246-40637375)
chr8 (49-119)||(40635738-40635808)
[»] chr4 (1 HSPs)
chr4 (179-277)||(1799014-1799112)
[»] chr5 (1 HSPs)
chr5 (179-279)||(35846965-35847065)
[»] chr3 (1 HSPs)
chr3 (179-279)||(45181462-45181562)


Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 41957931 - 41958201
Alignment:
Q  18 aagaaaagtgaaagtcaaaatctatacctagagctagaggtgtttatgtgtacgggtcaactgtgaacccagttgcacaaacgacccaaaccggcatttg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41957931 aagaaaagtgaaagtcaaaatctatacctagagctagaggtgttcatgtgtacgggtcaactgtgaacccagttgcacaaacgacccaaaccggcatttg 41958030  T
Q  118 tcggataacggatttgtcggttgaaactcacaaatgca--------acatctcatgcagtattactttcggttcgctttgcgctaatgttctaccttt-t 208  Q
    ||  ||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  41958031 tcacataacggatttgtcggttgaaactcacaaatgcaacccgttgacatctcatgcagtattactttcggttcgctttgcgctaatgttctacctttct 41958130  T
Q  209 ttgtcttgggattttggcatctggttatattgatgggttgggtttttggataggttaaagtgtctgctctg 279  Q
     |||||| ||||||||||||| ||||||||||||||||||| |||||||| ||||||| ||||||||||||    
T  41958131 ctgtcttcggattttggcatcgggttatattgatgggttggatttttggacaggttaaggtgtctgctctg 41958201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 5599003 - 5599164
Alignment:
Q  18 aagaaaagtgaaagtcaaaatctatacctagagctagaggtgtttatgtgtacgggtcaactgtgaacccagttgcacaaacgacccaaaccggcatttg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5599003 aagaaaagtgaaagtcaaaatctatacctagagctagaggtgttcatgtgtacgggtcaactgtgaacccagttgcacaaacgacccaaaccggcatttg 5599102  T
Q  118 tcggataacggatttgtcggttgaaactcacaaatgca--------acatctcatgcagtattactttcggt 181  Q
    ||          ||||||||||||||||||||||||||        ||||||||||||||||||||||||||    
T  5599103 tc----------tttgtcggttgaaactcacaaatgcaaccagttgacatctcatgcagtattactttcggt 5599164  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 5597558 - 5597488
Alignment:
Q  49 agctagaggtgtttatgtgtacgggtcaactgtgaacccagttgcacaaacgacccaaaccggcatttgtc 119  Q
    ||||||||||||| ||||||||||||||| | ||||| |||||||||||||||||||||||| ||||||||    
T  5597558 agctagaggtgttcatgtgtacgggtcaaatatgaacacagttgcacaaacgacccaaaccgacatttgtc 5597488  T

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Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 25548924 - 25549085
Alignment:
Q  18 aagaaaagtgaaagtcaaaatctatacctagagctagaggtgtttatgtgtacgggtcaactgtgaacccagttgcacaaacgacccaaaccggcatttg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25548924 aagaaaagtgaaagtcaaaatctatacctagagctagaggtgttcatgtgtacgggtcaactgtgaacccagttgcacaaacgacccaaatcggcatttg 25549023  T
Q  118 tcggataacggatttgtcggttgaaactcacaaatgca--------acatctcatgcagtattactttcggt 181  Q
    ||          ||||||||||||||||||||||||||        ||||||||||||||||||||||||||    
T  25549024 tc----------tttgtcggttgaaactcacaaatgcaacccgttgacatctcatgcagtattactttcggt 25549085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 40637246 - 40637375
Alignment:
Q  18 aagaaaagtgaaagtcaaaatctatacctagagctagaggtgtttatgtgtacgggtcaactgtgaacccagttgcacaaacgacccaaaccggcatttg 117  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40637246 aagaaaagtgaaagtcaaaatttatacctagagctagaggtgttcatgtgtacgggtcaactgtgaacccagttgcacaaacgacccaaaccgtcatttg 40637345  T
Q  118 tcggataacggatttgtcggttgaaactcacaaatgcaac 157  Q
    ||          ||||||||||||||||||||||||||||    
T  40637346 tc----------tttgtcggttgaaactcacaaatgcaac 40637375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 40635808 - 40635738
Alignment:
Q  49 agctagaggtgtttatgtgtacgggtcaactgtgaacccagttgcacaaacgacccaaaccggcatttgtc 119  Q
    ||||||||||||| ||||||||||||||| | ||||| |||||||||||||||||||||||| ||||||||    
T  40635808 agctagaggtgttcatgtgtacgggtcaaatatgaacacagttgcacaaacgacccaaaccgacatttgtc 40635738  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 277
Target Start/End: Original strand, 1799014 - 1799112
Alignment:
Q  179 ggttcgctttgcgctaatgttctacctttttt--gtcttgggattttggcatctggttatattgatgggttgggtttttggataggttaaagtgtctgct 276  Q
    ||||| |||||||||| |||||| |||||| |  ||||| ||||||||||||| ||||||  || ||||| | ||||||||||||||||| |||||||||    
T  1799014 ggttcactttgcgctattgttctgccttttctctgtctttggattttggcatcgggttat--tggtgggtcgagtttttggataggttaaggtgtctgct 1799111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 279
Target Start/End: Original strand, 35846965 - 35847065
Alignment:
Q  179 ggttcgctttgcgctaatgttctacctttt--ttgtcttgggattttggcatctggttatattgatgggttgggtttttggataggttaaagtgtctgct 276  Q
    ||||||||||  |||| ||||| |||||||  ||||||| ||||||||||||| |||  ||||| |||||   ||||||||| | ||||| |||||||||    
T  35846965 ggttcgctttatgctattgttccaccttttctttgtctttggattttggcatcgggt--tattggtgggtcaagtttttggacatgttaaggtgtctgct 35847062  T
Q  277 ctg 279  Q
    |||    
T  35847063 ctg 35847065  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 279
Target Start/End: Original strand, 45181462 - 45181562
Alignment:
Q  179 ggttcgctttgcgctaatgttctacctttttt--gtcttgggattttggcatctggttatattgatgggttgggtttttggataggttaaagtgtctgct 276  Q
    |||||| ||||||||| | ||| |||||||||  ||||| ||||||||||||  ||||||  || ||||| | ||||||||| ||||||  |||||||||    
T  45181462 ggttcgttttgcgctactattccaccttttttctgtctttggattttggcattgggttat--tggtgggtcgagtttttggacaggttagggtgtctgct 45181559  T
Q  277 ctg 279  Q
    |||    
T  45181560 ctg 45181562  T

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