View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4138_low_4 (Length: 262)
Name: NF4138_low_4
Description: NF4138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4138_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 253
Target Start/End: Original strand, 1095075 - 1095312
Alignment:
| Q |
20 |
tgttcctggtagttgattttctaaccgcatgccaaaagtagttggaaatggtatatatacattattttggtttgatttgtgggtgatcagagaaattttt |
119 |
Q |
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| T |
1095075 |
tgttcctggtagttggttttctaaccgcatgccaaaagtagttggaaatggtatatatactttattttggtttgatttgtgggtgatcagagaaattttt |
1095174 |
T |
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| Q |
120 |
atggataaactcaagcaatctttttagtttatttatcaattaataaacaagcatttgtggaagatatgttgaatgtgagtggaggtttaggc------ga |
213 |
Q |
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| T |
1095175 |
atggat--actcaagcaatctttttagtttatttatcaattaataaacaagcatttgtggaagatatgttgaatgtgagtggaggtttaggctacatgga |
1095272 |
T |
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| Q |
214 |
ccggaggttgcataaaaatattttcatttgggagaataat |
253 |
Q |
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| T |
1095273 |
ccggaggttgcataaaaatattttcatttgggaggataat |
1095312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 1116511 - 1116749
Alignment:
| Q |
19 |
atgttcctggtagttgattttctaaccgcatgccaaaagtagttggaaatggtatatatacattattttggtttgatttgtgggtgatcagagaaatttt |
118 |
Q |
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| T |
1116511 |
atgttcctggtatttggttttctaatcgcttgtcaaaagtggttggaaatggtatagatactttattttggtttgatttgtgggtggttggagaaacatt |
1116610 |
T |
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| Q |
119 |
tatggataaactcaagcaatctttttagtttatttatcaattaataaacaagcatttgtggaagatatgttgaatgtgagtggaggtttag------gcg |
212 |
Q |
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| T |
1116611 |
tatggataaacttaaccaatctttttagtatatctatcaattaataaacaggtgtttgtgaaagataagttgaa--tgagtggaggttcagatgacttgg |
1116708 |
T |
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| Q |
213 |
accggaggttgcataaaaatattttcatttgggagaataat |
253 |
Q |
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| T |
1116709 |
actggaggctgcataaaaatattttcctttgggaggataat |
1116749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 1098162 - 1098216
Alignment:
| Q |
159 |
ttaataaacaagcatttgtggaagatatgttgaatgtgagtggaggtttaggcgac |
214 |
Q |
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| T |
1098162 |
ttaataaacaggcatttgtggaagatatgttgaatgtga-tggaggtttaggcgac |
1098216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 1121176 - 1121253
Alignment:
| Q |
173 |
tttgtggaagatatgttgaatgtgagtggaggtttaggc------gaccggaggttgcataaaaatattttcatttgg |
244 |
Q |
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| T |
1121176 |
tttgtggaagatatgttgaatgtgagtggaggtttaggcgacatggactggaggatgcataaaaatattttcctttgg |
1121253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 8115592 - 8115646
Alignment:
| Q |
154 |
atcaattaataaacaagcatttgtggaagatatgttgaatgtgagtggaggttta |
208 |
Q |
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| T |
8115592 |
atcaattaataaacaggtgtttgtggaagatatgttgaatgtgagtggaggttta |
8115646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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