View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4139_high_10 (Length: 338)
Name: NF4139_high_10
Description: NF4139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4139_high_10 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 11 - 338
Target Start/End: Original strand, 20998396 - 20998723
Alignment:
| Q |
11 |
acatcatcatcttcgaagggaatagtcgctgaattgaaggaaaaggttccgcagctgaagaagaaaccggcgagtttcgatccgagttcggttgtttgct |
110 |
Q |
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| T |
20998396 |
acatcatcatcttcgaagggaatagtcgctgaattgaaggaaaaggttccgcagctgaagaagaaaccggcgagtttcgatccgagttcggttgtttgct |
20998495 |
T |
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| Q |
111 |
gggagaaagacaaacctgttccgtttttgtttctctgcttagcgtttgatatgattaatgaagagagtggaaggattgtgatcactgacattgtgtgtaa |
210 |
Q |
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| T |
20998496 |
gggagaaagacaaacctgttccgtttttgtttctctgtttggcgtttgatatgattaacgaagagagtgggaggattgtgatcactgacattgtgtgtaa |
20998595 |
T |
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| Q |
211 |
tttgttgagaactgtgatacatgctacgccggaggatcttgtgcttgttgtttatttatcagcgaatagaattgcgccggcgcatgaagggttggaattg |
310 |
Q |
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| T |
20998596 |
tttgttgagaactgtgatacatgctacaccggaagatcttgtgcctgttgtttatttatcagcgaatagaattgcgccggcgcatgaagggttggaattg |
20998695 |
T |
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| Q |
311 |
ggaattggtgatgcttcgattattaagg |
338 |
Q |
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| T |
20998696 |
ggaattggtgatgcttcgattattaagg |
20998723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 14 - 335
Target Start/End: Original strand, 20988167 - 20988488
Alignment:
| Q |
14 |
tcatcatcttcgaagggaatagtcgctgaattgaaggaaaaggttccgcagctgaagaagaaaccggcgagtttcgatccgagttcggttgtttgctggg |
113 |
Q |
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| T |
20988167 |
tcatcttcttccaacgggatagtcgctgaattgaaggaaaaagttccggagctgaagaagaaaccggagaatttcgatccgagttcggttgtttgctggg |
20988266 |
T |
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| Q |
114 |
agaaagacaaacctgttccgtttttgtttctctgcttagcgtttgatatgattaatgaagagagtggaaggattgtgatcactgacattgtgtgtaattt |
213 |
Q |
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| T |
20988267 |
agaaaaacaaacctgtgccgtttttgtttctctctttagcgtttgatttgattagcaaagagaggggaagaattgtgatcactgagattgtgtgtaatct |
20988366 |
T |
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| Q |
214 |
gttgagaactgtgatacatgctacgccggaggatcttgtgcttgttgtttatttatcagcgaatagaattgcgccggcgcatgaagggttggaattggga |
313 |
Q |
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| T |
20988367 |
gttgaggactgtgatacatgccacacctgatgatcttgttccggttgtttatctttcagcgaataaaattgcgccggcgtataaagggttagagttggga |
20988466 |
T |
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| Q |
314 |
attggtgatgcttcgattatta |
335 |
Q |
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| T |
20988467 |
atcggtgatgcttcgatcatta |
20988488 |
T |
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