View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4139_high_11 (Length: 330)
Name: NF4139_high_11
Description: NF4139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4139_high_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 156 - 264
Target Start/End: Original strand, 13362076 - 13362186
Alignment:
| Q |
156 |
caaacccagatctataaacatttatattctctgctttgctggattttgtttctca--nnnnnnnnccaaagggaattggatccatgatttcaataaaaat |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13362076 |
caaacccagatctataaacatttatattctctactttgctggattttgtttctcattttttttttccaaagggaattggatccatgatttcaataaaaat |
13362175 |
T |
|
| Q |
254 |
gtttgagaaat |
264 |
Q |
| |
|
|||||| |||| |
|
|
| T |
13362176 |
gtttgaaaaat |
13362186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 251 - 330
Target Start/End: Original strand, 13362227 - 13362308
Alignment:
| Q |
251 |
aatgtttgagaaatttagagtcatgggcat--gaatggatattgaggaacaagcttcgtgttacggtgaatgttattgttgt |
330 |
Q |
| |
|
|||||||||||||||| |||||||||| || ||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
13362227 |
aatgtttgagaaatttggagtcatgggtatatgaatggatattgaggaacaagcttcatgttatggtgaatgttattgttgt |
13362308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 13361981 - 13362019
Alignment:
| Q |
61 |
agcaaagcaattccataagcaataaagagaacaaaaacc |
99 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13361981 |
agcaaagcaattccataagcattaaagagaacaaaaacc |
13362019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 156 - 264
Target Start/End: Original strand, 50056571 - 50056684
Alignment:
| Q |
156 |
caaacccagatctataaacatttat----attctctgctttgctggattttgtttctcannnnnnnn-ccaaagggaattggatccatgatttcaataaa |
250 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
50056571 |
caaacccagatctataaacatgtatgtatattctctgctttcctggattttgtttctcatctttgtttccaaagggaattggatccatgatttcaataaa |
50056670 |
T |
|
| Q |
251 |
aatgtttgagaaat |
264 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
50056671 |
aatgtttgacaaat |
50056684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 251 - 330
Target Start/End: Original strand, 50056725 - 50056804
Alignment:
| Q |
251 |
aatgtttgagaaatttagagtcatgggcatgaatggatattgaggaacaagcttcgtgttacggtgaatgttattgttgt |
330 |
Q |
| |
|
|||||||||||||||| ||||||| || ||||||||||||||||||||| ||||| |||| |||||||||||||||||| |
|
|
| T |
50056725 |
aatgtttgagaaatttggagtcataggtatgaatggatattgaggaacaggcttcaagttatggtgaatgttattgttgt |
50056804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 50056475 - 50056513
Alignment:
| Q |
61 |
agcaaagcaattccataagcaataaagagaacaaaaacc |
99 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
50056475 |
agcaaagcaattccataagcattaaagagaataaaaacc |
50056513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University