View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4139_high_18 (Length: 312)

Name: NF4139_high_18
Description: NF4139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4139_high_18
NF4139_high_18
[»] chr4 (2 HSPs)
chr4 (11-300)||(12888501-12888789)
chr4 (53-135)||(46879468-46879551)
[»] chr2 (1 HSPs)
chr2 (27-300)||(36593173-36593443)
[»] chr8 (3 HSPs)
chr8 (17-295)||(20519263-20519538)
chr8 (17-300)||(38149043-38149323)
chr8 (3-300)||(32919039-32919331)
[»] chr3 (1 HSPs)
chr3 (1-300)||(49358802-49359100)
[»] chr6 (3 HSPs)
chr6 (17-300)||(22696806-22697086)
chr6 (91-295)||(34501223-34501420)
chr6 (4-88)||(34502715-34502799)
[»] chr7 (3 HSPs)
chr7 (48-300)||(36934533-36934785)
chr7 (129-300)||(5888760-5888932)
chr7 (17-133)||(5892651-5892769)
[»] chr5 (3 HSPs)
chr5 (94-287)||(27631784-27631977)
chr5 (4-114)||(36607593-36607706)
chr5 (26-75)||(27631967-27632018)
[»] chr1 (1 HSPs)
chr1 (4-137)||(32946613-32946746)


Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 300
Target Start/End: Original strand, 12888501 - 12888789
Alignment:
11 cttgagctcaccaccacacaagaaagagacagtaaacttcgcctcccaactcaacaccaacaaccgtcacttgtgatatccatcaccaacaaccaccaaa 110  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||| |||||||||||||||||||||    
12888501 cttgaactcaccac-acacaagaaagagacagtaaacttcgcctcccaactcaacaccaacaaccaccacctgtgatacccatcaccaacaaccaccaaa 12888599  T
111 atcaccatcaactcaataaaccatgaccttagatctgagatcaccacatgcaaactgcatcaccaccacttggacatcccccaagacagcaacattactc 210  Q
    || ||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||| || ||||||||||||  ||||    
12888600 attaccatcaactcaataaaccatgaccttagatttgagatcaccacacgcagactgcatcaccaccacttggacatcacctaagacagcaacaccactc 12888699  T
211 cctgcatcacctccattcgaaacttcaccaaaaacagcagcacactaacaacacccccactccaacatcaccaaccgaaacatctccctt 300  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||| | ||||| ||||||||||||||||||||||||||||    
12888700 cctgcatcacctccatttgaaacttcaccaaaaacagcagcacattaacaacaacaccactacaacatcaccaaccgaaacatctccctt 12888789  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 46879551 - 46879468
Alignment:
53 ctcccaactcaacaccaacaaccgtca-cttgtgatatccatcaccaacaaccaccaaaatcaccatcaactcaataaaccatg 135  Q
    |||||||||||||||||||||||  || |||| |||| ||||||| ||||| ||| ||||||||||| ||||||||||| ||||    
46879551 ctcccaactcaacaccaacaaccaccatcttgagatacccatcacaaacaatcactaaaatcaccattaactcaataaaacatg 46879468  T

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Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 27 - 300
Target Start/End: Original strand, 36593173 - 36593443
Alignment:
27 cacaagaaagagacagtaaacttcgcctcccaactcaacaccaacaaccgtcacttgtgatatccatcaccaacaaccaccaaaatcaccatcaactcaa 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||   |||||||||| ||||||| ||||||||||||||| |||||||||||||    
36593173 cacaagaaagagacagtaaacttcgcctcccaactcaacaccaaccacc---acttgtgatacccatcacaaacaaccaccaaaataaccatcaactcaa 36593269  T
127 taaaccatgaccttagatctgagatcaccacatgcaaactgcatcaccaccacttggacatcccccaagacagcaacattactccctgcatcacctccat 226  Q
    ||| |||||||||||||||||||||||||| |  || ||| |||||||||||||||||||||  |||| |||||||||  ||||||||||||||||||||    
36593270 taatccatgaccttagatctgagatcaccaaacacagactacatcaccaccacttggacatcatccaaaacagcaacaccactccctgcatcacctccat 36593369  T
227 tcgaaacttcaccaaaaacagcagcacactaacaacacccccactccaacatcaccaaccgaaacatctccctt 300  Q
    |||||||||||| |||||||| ||||||||||||||||  |||||| |||||||||||||||||||||||||||    
36593370 tcgaaacttcacaaaaaacagtagcacactaacaacactaccactctaacatcaccaaccgaaacatctccctt 36593443  T

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Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 17 - 295
Target Start/End: Original strand, 20519263 - 20519538
Alignment:
17 ctcaccaccacacaagaaagagacagtaaacttcgcctcccaactcaacaccaacaaccgtcacttgtgatatccatcaccaacaaccaccaaaatcacc 116  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||   |||| ||||| |||||||||||||||||||||||| ||    
20519263 ctcaccaccacacaagaaagagacaataaacttcgcctcccaactcaacaccaaccacc---acttatgatacccatcaccaacaaccaccaaaatctcc 20519359  T
117 atcaactcaataaaccatgaccttagatctgagatcaccacatgcaaactgcatcaccaccacttggacatcccccaagacagcaacattactccctgca 216  Q
    |||||| |||| |||||||| ||||||||||||||||| | | ||| |||  |||||||||||||||||||| || || ||||||||| |||||||| ||    
20519360 atcaacacaatcaaccatgatcttagatctgagatcacaaaacgcagactcaatcaccaccacttggacatcacctaaaacagcaacactactccctaca 20519459  T
217 tcacctccattcgaaacttcaccaaaaacagcagcacactaacaacacccccactccaacatcaccaaccgaaacatct 295  Q
    |||||||||||| ||||||||||||||||||  |||||||||||||||  |||||| ||||||||||||||||||||||    
20519460 tcacctccattcaaaacttcaccaaaaacagttgcacactaacaacactaccactctaacatcaccaaccgaaacatct 20519538  T

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Target: chr8; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 38149323 - 38149043
Alignment:
17 ctcaccaccacacaagaaagagacagtaaacttcgcctcccaactcaacaccaacaaccgtcacttgtgatatccatcaccaacaaccaccaaaatcacc 116  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||   ||||||||||  |||||||||||||||||||||| |||    
38149323 ctcaccaccacacaagaaagagacaataaacttcgcctcccaactcaacaccaaccacc---acttgtgatactcatcaccaacaaccaccaaaataacc 38149227  T
117 atcaactcaataaaccatgaccttagatctgagatcaccacatgcaaactgcatcaccaccacttggacatcccccaagacagcaacattactccctgca 216  Q
    |||||||||||||||||||||||||||||||||||||||| |  || |||||||||||||||||   |||||  |||| |||| | ||  ||||||||||    
38149226 atcaactcaataaaccatgaccttagatctgagatcaccaaacacagactgcatcaccaccactgtcacatcatccaaaacagaagcaccactccctgca 38149127  T
217 tcacctccattcgaaacttcaccaaaaacagcagcacactaacaacacccccactccaacatcaccaaccgaaacatctccctt 300  Q
    |||||||||||| ||||||||| |||||||| |||||||||| |||||  ||| || |||||||||||||||||||||||||||    
38149126 tcacctccattcaaaacttcacaaaaaacagtagcacactaataacactaccattctaacatcaccaaccgaaacatctccctt 38149043  T

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Target: chr8; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 3 - 300
Target Start/End: Complemental strand, 32919331 - 32919039
Alignment:
3 gccacacccttgagctcaccaccacacaagaaagagacagtaaacttcgcctcccaactcaacaccaacaaccgtcacttgtgatatccatcaccaacaa 102  Q
    |||||||||  || ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||   |||||||||| |||||||||||||    
32919331 gccacacccacgaactcaccaccacacaagaaagagatagtgaacttcgcctcccaactcaacaccaaccacc---acttgtgatacccatcaccaacaa 32919235  T
103 ccaccaaaatcaccatcaactcaataaaccatgaccttagatctgagatcaccacatgcaaactgcatcaccaccacttggacatcccccaagacagcaa 202  Q
    |||||||| | |||||||||||||||||  |||||||||||| ||||||||||| |  || ||||||||||||||||||| |||||  |||| ||||||     
32919234 ccaccaaa-taaccatcaactcaataaattatgaccttagatatgagatcaccaaacacagactgcatcaccaccacttgaacatcatccaaaacagcag 32919136  T
203 cattactccctgcatcacctccattcgaaacttcaccaaaaacagcagcacactaacaacacccccactccaacatcaccaaccgaaacatctccctt 300  Q
    ||  ||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||  |||||| |||||||||||||||||||||||||||    
32919135 cac-actccttgcatcacctccattcgaaacttcacaaaaaacagtagcacactaacaacactgccactctaacatcaccaaccgaaacatctccctt 32919039  T

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Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 49358802 - 49359100
Alignment:
1 tcgccacacccttgagctcaccaccacacaagaaagagacagtaaac--ttcgcctcccaactcaacaccaacaaccgtcacttgtgatatccatcacca 98  Q
    ||||||||||| ||| |||||| |||||||||||||||||||| |||  ||||||| ||| ||||||||||| ||||  ||||||||||| |||||||||    
49358802 tcgccacacccctgaactcaccgccacacaagaaagagacagtgaacatttcgccttccacctcaacaccaaaaaccaccacttgtgatacccatcacca 49358901  T
99 acaaccaccaaaatcaccatcaactcaataaaccatgaccttagatctgagatcaccacatgcaaactgcatcaccaccacttggacatcccccaagaca 198  Q
    |||||||||||||||||||| |||| |||||||||| ||||||||||||| ||||||||| |||||||||||   ||||||||||||||| |||||||||    
49358902 acaaccaccaaaatcaccatgaacttaataaaccataaccttagatctgatatcaccacacgcaaactgcat---caccacttggacatcacccaagaca 49358998  T
199 gcaacattactccctgcatcacctccattcgaaacttcaccaaaaacagcagcacactaacaacacccccactccaacatcaccaaccgaaacatctccc 298  Q
    | || |  | ||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||  |||||||||||||||||| ||||||||||||    
49358999 ggaagaccattccctacatcaccttcattcgaaacttcaccaaaaacaacatcacactaacaacaccaacactccaacatcaccaacagaaacatctccc 49359098  T

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Target: chr6 (Bit Score: 153; Significance: 4e-81; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 17 - 300
Target Start/End: Original strand, 22696806 - 22697086
Alignment:
17 ctcaccaccacacaagaaagagacagtaaac--ttcgcctcccaactcaacaccaacaaccgtcacttgtgatatccatcaccaacaaccaccaaaatca 114  Q
    ||||||||||||||||||||||||||| |||  ||||||||||| || |||||||||||||  ||||||||||| | ||||||||||||||      |||    
22696806 ctcaccaccacacaagaaagagacagtgaacatttcgcctcccagctaaacaccaacaaccaccacttgtgataccgatcaccaacaacca------tca 22696899  T
115 ccatcaactcaataaaccatgaccttagatctgagatcaccacatgcaaactgcatcaccaccacttggacatcccccaagacagcaacattactccctg 214  Q
    ||||||||||||||| |||||||||||||||||||||||||||| | | ||||||||||| ||||||||||||| ||||||||||||||| | ||||||     
22696900 ccatcaactcaataatccatgaccttagatctgagatcaccacacgtagactgcatcaccgccacttggacatcacccaagacagcaacactgctcccta 22696999  T
215 catcacctccattcgaaacttcaccaaaaacagcagcacact-aacaacacccccactccaacatcaccaaccgaaacatctccctt 300  Q
    |||||||||||||| |||||||||||||||||| ||| |||| ||||||||| ||||| ||||||||||| ||||||| ||||||||    
22697000 catcacctccattcaaaacttcaccaaaaacagtagctcactaaacaacaccaccacttcaacatcaccagccgaaacgtctccctt 22697086  T

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Target: chr6; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 91 - 295
Target Start/End: Complemental strand, 34501420 - 34501223
Alignment:
91 catcaccaacaaccaccaaaatcaccatcaactcaataaaccatgaccttagatctgagatcaccacatgcaaactgcatcaccaccacttggacatccc 190  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||| |||       |||||| ||| |||||||||| |||||||||||||| |    
34501420 catcaccaacaaccactaaaatcaccatcaactcaatataccatgaccttatatc-------accacacgcagactgcatcactaccacttggacatcac 34501328  T
191 ccaagacagcaacattactccctgcatcacctccattcgaaacttcaccaaaaacagcagcacactaacaacacccccactccaacatcaccaaccgaaa 290  Q
    ||||||||||||||  ||||||  |||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||    
34501327 ccaagacagcaacaccactcccaacatcacctccattcgaaacttcaccaaaaatagtagcacactaacaacaccaccactccaacatcaccaaccgaaa 34501228  T

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Target: chr6; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 34502799 - 34502715
Alignment:
4 ccacacccttgagctcaccaccacacaagaaagagacagtaaacttcgcctcccaactcaacaccaacaaccgtcacttgtgata 88  Q
    |||||||||  | |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||    
34502799 ccacaccctcaaactcaccaccacagaagaaagagacagtaaacttcgcctcccaactcaacagcaacaaccaccacttgtgata 34502715  T

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Target: chr7 (Bit Score: 136; Significance: 6e-71; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 48 - 300
Target Start/End: Original strand, 36934533 - 36934785
Alignment:
48 ttcgcctcccaactcaacaccaacaaccgtcacttgtgatatccatcaccaacaaccaccaaaatcaccatcaactcaataaaccatgaccttagatctg 147  Q
    |||||||||||||||||||||||  |||  ||||||||||| ||||||||||||||||||||||| |||||||||  |||||||||||||||| ||||||    
36934533 ttcgcctcccaactcaacaccaaacaccaccacttgtgatacccatcaccaacaaccaccaaaattaccatcaac--aataaaccatgaccttcgatctg 36934630  T
148 a-gatcaccacatgcaaactgcatcaccaccacttggacatcccccaagacagcaacattactccctgcatcacctccattcgaaacttcacc-aaaaac 245  Q
    | ||||||||||  ||  |||||||||||||||||||||||| ||||||| |||| ||  |||||||||||||||||| |||||||||||||| ||||||    
36934631 aagatcaccacactcaggctgcatcaccaccacttggacatcacccaagatagcagcaccactccctgcatcacctcccttcgaaacttcaccaaaaaac 36934730  T
246 agcagcacactaacaacacccccactccaacatcaccaaccgaaacatctccctt 300  Q
    | |||| ||||||||||||| ||||||| ||||||||||||||||| | ||||||    
36934731 aacagcgcactaacaacaccaccactccgacatcaccaaccgaaacgtgtccctt 36934785  T

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Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 129 - 300
Target Start/End: Complemental strand, 5888932 - 5888760
Alignment:
129 aaccatgaccttagatctga-gatcaccacatgcaaactgcatcaccaccacttggacatcccccaagacagcaacattactccctgcatcacctccatt 227  Q
    ||||| |||||||||| ||| |||||||||||||| ||| ||||||||||||||||||||| ||||||| |||||||  ||||  |||| ||||||||||    
5888932 aaccacgaccttagatatgaagatcaccacatgcagactacatcaccaccacttggacatcacccaagatagcaacaccactctatgcagcacctccatt 5888833  T
228 cgaaacttcaccaaaaacagcagcacactaacaacacccccactccaacatcaccaaccgaaacatctccctt 300  Q
    ||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||| ||||||||    
5888832 cgaaacttcaccaaaaacagcagcacactaacaacaccaacactccgacatcaccaaccgaaacgtctccctt 5888760  T

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Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 5892769 - 5892651
Alignment:
17 ctcaccaccacacaagaaagagacagtaaac--ttcgcctcccaactcaacaccaacaaccgtcacttgtgatatccatcaccaacaaccaccaaaatca 114  Q
    ||||| ||||||||||||||||||||| |||  |||||||||||||| ||||||||  |||  ||||||||||| ||||||| ||| | |||||||||||    
5892769 ctcacaaccacacaagaaagagacagtgaacatttcgcctcccaacttaacaccaaacaccaccacttgtgatacccatcactaacgaacaccaaaatca 5892670  T
115 ccatcaactcaataaacca 133  Q
    |||||||||||||| ||||    
5892669 ccatcaactcaatacacca 5892651  T

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Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 94 - 287
Target Start/End: Complemental strand, 27631977 - 27631784
Alignment:
94 caccaacaaccaccaaaatcaccatcaactcaataaaccatgaccttagatctgagatcaccacatgcaaactgcatcaccaccacttggacatccccca 193  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||| |||||||||||  |||||||| ||||    
27631977 caccaacaaccaccaaaatcaccatcaactcaataaatcattaccttagatctgagatcaccacatgcagactacatcaccaccatgtggacatcaccca 27631878  T
194 agacagcaacattactccctgcatcacctccattcgaaacttcaccaaaaacagcagcacactaacaacacccccactccaacatcaccaaccg 287  Q
    |||  ||| ||  |||||||||| ||||||||||| |||| |||||||||| |||||||||||||||||||| | |||||||||||||||||||    
27631877 agatggcatcaccactccctgcaccacctccattcaaaacatcaccaaaaatagcagcacactaacaacaccactactccaacatcaccaaccg 27631784  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 36607706 - 36607593
Alignment:
4 ccacacccttgagctcaccaccacacaagaaagagacagtaaac--ttcgcctcccaactcaacaccaaca-accgtcacttgtgatatccatcaccaac 100  Q
    ||||||||  || ||||| | ||||| ||||||||||| | |||  ||||||||||||||||||||||| | |||  |||| |||||| ||||||| |||    
36607706 ccacacccccgaactcactatcacacgagaaagagacattgaacatttcgcctcccaactcaacaccaaaacaccaccactcgtgatacccatcactaac 36607607  T
101 aaccaccaaaatca 114  Q
    ||||||||||||||    
36607606 aaccaccaaaatca 36607593  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 27632018 - 27631967
Alignment:
26 acacaagaaagagacagtaaac--ttcgcctcccaactcaacaccaacaacc 75  Q
    |||||||||||||||| | |||  ||||||||||||||||||||||||||||    
27632018 acacaagaaagagacaatgaacatttcgcctcccaactcaacaccaacaacc 27631967  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 32946746 - 32946613
Alignment:
4 ccacacccttgagctcaccaccacacaagaaagagacagtaaacttcgcctcccaactcaacaccaacaaccgtcacttgtgatatccatcaccaacaac 103  Q
    ||||||||  || |||||||||||||||||||||    | | | |||||||||||| |||||| ||||||||  |||||||||||   ||||||||||||    
32946746 ccacacccacgaactcaccaccacacaagaaagacggtgaacatttcgcctcccaaatcaacatcaacaaccaccacttgtgatacatatcaccaacaac 32946647  T
104 caccaaaatcaccatcaactcaataaaccatgac 137  Q
    ||||||||| ||||| ||||||||||||||||||    
32946646 caccaaaattaccattaactcaataaaccatgac 32946613  T

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