View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4139_high_2 (Length: 392)
Name: NF4139_high_2
Description: NF4139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4139_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 24 - 361
Target Start/End: Original strand, 2786164 - 2786501
Alignment:
| Q |
24 |
acatcatcaactttaacatgaatttgatttgaaggcaagtttgttgttccggaaggactcaaggcagtgcgggcttccctgaaaccttctgatatcaaaa |
123 |
Q |
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| T |
2786164 |
acatcgtcaactttaacatgaatttgatttgaaggcaagtttgttgttccggaaggactcaaggcagtgcgggcttccctgaaaccttctgatatcaaaa |
2786263 |
T |
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| Q |
124 |
caagagggggtttcgcatcaacaggtggattgacagctccagcattgtagatggctttgattttgggaagatttcttgggcagatgacagatagagaaat |
223 |
Q |
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| T |
2786264 |
caagagggggtttagcatcaaccggtggattgacagctccagcattgtagatggctttgattttgggaagatttcttgggcagatgacagatagagaaat |
2786363 |
T |
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| Q |
224 |
agaaaactgcggaaatgctttagcaacatcttcagcatcataaaactggttacctgattccgagtcaatggattcattcttcttgggaacatatattggt |
323 |
Q |
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| T |
2786364 |
agaaaactgcggaaatgctttagcaacatcttcagcatcataaaactggttacctgattccgagtcaatggattcattcttcttgggaacatatattggt |
2786463 |
T |
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| Q |
324 |
ctcttcaatggataaggattactggctgccacaagaat |
361 |
Q |
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| T |
2786464 |
ctcttcaatggataaggattactggctgccacaagaat |
2786501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 22517521 - 22517462
Alignment:
| Q |
165 |
gcattgtagatggctttgattttgggaagatttcttgggcagatgacagatagagaaata |
224 |
Q |
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| T |
22517521 |
gcattgtagatggctttaattttgggaagttgttttgggcagacgaccgatagagaaata |
22517462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 306
Target Start/End: Complemental strand, 22517356 - 22517280
Alignment:
| Q |
230 |
ctgcggaaatgctttagcaacatcttcagcatcataaaactggtt-acctgattccgagtcaatggattcattcttct |
306 |
Q |
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| T |
22517356 |
ctgcggaaacgctttagcaacagcttcagcatcatataactggttcacttggtt-tgagtcaatggattcagtcttct |
22517280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 22518281 - 22518232
Alignment:
| Q |
79 |
gactcaaggcagtgcgggcttccctgaaaccttctgatatcaaaacaaga |
128 |
Q |
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| T |
22518281 |
gactcaaggcactgcgggcttccctaaaaccttctgatattaaaataaga |
22518232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 22517262 - 22517213
Alignment:
| Q |
309 |
ggaacatatattggtctcttcaatggataaggattactggctgccacaag |
358 |
Q |
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| T |
22517262 |
ggaacatataccggtgtctgcaatgggtaaggattactggctgccacaag |
22517213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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