View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4139_high_7 (Length: 344)

Name: NF4139_high_7
Description: NF4139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4139_high_7
NF4139_high_7
[»] chr7 (6 HSPs)
chr7 (10-324)||(18395911-18396234)
chr7 (210-269)||(27073633-27073692)
chr7 (210-269)||(27204621-27204680)
chr7 (257-319)||(23565300-23565363)
chr7 (216-317)||(40808414-40808517)
chr7 (223-319)||(36146661-36146759)
[»] chr8 (8 HSPs)
chr8 (202-317)||(11712244-11712361)
chr8 (223-304)||(32902442-32902524)
chr8 (226-304)||(29796578-29796656)
chr8 (171-252)||(7597380-7597462)
chr8 (202-252)||(8153572-8153622)
chr8 (226-279)||(3232092-3232145)
chr8 (202-279)||(8863333-8863409)
chr8 (230-278)||(18141659-18141706)
[»] chr2 (4 HSPs)
chr2 (202-317)||(4560904-4561021)
chr2 (235-279)||(28671797-28671841)
chr2 (234-319)||(11067134-11067221)
chr2 (230-304)||(36773387-36773462)
[»] scaffold0129 (1 HSPs)
scaffold0129 (223-303)||(19854-19933)
[»] chr4 (6 HSPs)
chr4 (164-279)||(21704109-21704225)
chr4 (164-279)||(3739397-3739511)
chr4 (230-317)||(6677306-6677394)
chr4 (223-304)||(36463657-36463738)
chr4 (226-269)||(4587792-4587835)
chr4 (224-257)||(43208174-43208207)
[»] chr1 (5 HSPs)
chr1 (230-304)||(8871315-8871390)
chr1 (218-274)||(2263271-2263327)
chr1 (228-304)||(28265821-28265898)
chr1 (204-252)||(25116407-25116455)
chr1 (253-319)||(49918210-49918278)
[»] chr5 (1 HSPs)
chr5 (205-279)||(5611451-5611524)
[»] chr3 (5 HSPs)
chr3 (205-279)||(21156738-21156811)
chr3 (226-279)||(40519479-40519532)
chr3 (226-279)||(2075350-2075403)
chr3 (230-274)||(9666754-9666797)
chr3 (223-279)||(37761765-37761820)


Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 10 - 324
Target Start/End: Original strand, 18395911 - 18396234
Alignment:
Q  10 gatggacatcatcaaggaaaacaaatgttgaaatttgtctaaaatatcgacaaaaattgggccgtgatttgcaaaaatcgtgacgcgattttggttaagg 109  Q
    ||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  18395911 gatggccataatcaaggaaaacaaatgttgaaatttgtctaaaaaatcgacaaaaattgggccgcgatttgcaaaaatcgtgacgagattttggttaagg 18396010  T
Q  110 t---------tttgattcgaaaaattgtggcacgaaagaggaaaatcgtggaacgattttaagtaacttgaaatcgtggcacaattagtgaaaattgtga 200  Q
    |         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18396011 ttttggaggttttgattcgaaaaattgtggcacgaaagaggaaaatcgtggaacgattttaagtaacttgaaatcgtggcacaattagtgaaaattgtga 18396110  T
Q  201 tacgattttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatcaaggaggtaactt 300  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  18396111 tacgattttctcggaacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagagagaaactttggatatcaaggaggtaactt 18396210  T
Q  301 taggttgaatgtctttgatgatgt 324  Q
    ||||||||||||||||| ||||||    
T  18396211 taggttgaatgtctttggtgatgt 18396234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 27073633 - 27073692
Alignment:
Q  210 ctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagag 269  Q
    |||||| ||| |||||||||||||||||||||||||| |||||| ||||  |||||||||    
T  27073633 ctcggggcttttgcattatataagacttcattcttcaagttttaggtaggacttcaagag 27073692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 269
Target Start/End: Complemental strand, 27204680 - 27204621
Alignment:
Q  210 ctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagag 269  Q
    |||||| ||| |||||||||||||||||||||||||| |||||| ||||  |||||||||    
T  27204680 ctcggggcttttgcattatataagacttcattcttcaagttttaggtaggacttcaagag 27204621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 319
Target Start/End: Complemental strand, 23565363 - 23565300
Alignment:
Q  257 agagcttcaagagtgagaaactttgggtatc-aaggaggtaactttaggttgaatgtctttgat 319  Q
    ||||||||||||| ||||||||| || |||| ||||||||||||||||||| |  |||||||||    
T  23565363 agagcttcaagagagagaaacttgggatatcaaaggaggtaactttaggttaagggtctttgat 23565300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 317
Target Start/End: Original strand, 40808414 - 40808517
Alignment:
Q  216 acttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaacttta-ggttgaatgtc 313  Q
    ||||||||  ||||||  ||||||||||||||||| |||||||  ||| ||||| || |||||| | | ||| ||||||||||||||| |||||| ||||    
T  40808414 acttgtgctctatatagaacttcattcttcatgttataagtaggacttaaagagagataaacttagagaatcaaaggaggtaactttagggttgagtgtc 40808513  T
Q  314 tttg 317  Q
    ||||    
T  40808514 tttg 40808517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 319
Target Start/End: Complemental strand, 36146759 - 36146661
Alignment:
Q  223 cattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaactttag-gttgaatgtctttgat 319  Q
    |||||| |||| ||||||||||||| ||||  | ||||||||||||| || |||||| ||  ||| |||||||||||||||| |||||  |||||||||    
T  36146759 cattatttaaggcttcattcttcattttttgggaagagcttcaagagagaaaaacttgggaaatcaaaggaggtaactttagtgttgagggtctttgat 36146661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 202 - 317
Target Start/End: Complemental strand, 11712361 - 11712244
Alignment:
Q  202 acgattttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaactt 300  Q
    |||||||||| ||||| |||||| ||||||||  ||||||||| |||||||| ||||||||||||||| ||||||||| ||||||| || ||||||||||    
T  11712361 acgattttcttgggacatgtgcactatataaggtttcattctttatgttttaggtagagcttcaagagagagaaacttagggtatcaaatgaggtaactt 11712262  T
Q  301 ta-ggttgaatgtctttg 317  Q
    || |||||| ||||||||    
T  11712261 tagggttgagtgtctttg 11712244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 223 - 304
Target Start/End: Complemental strand, 32902524 - 32902442
Alignment:
Q  223 cattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatca-aggaggtaactttagg 304  Q
    |||| ||||||||||||||||||||||||| || || |||||||||| ||||||||| ||  |||| | ||||||||||||||    
T  32902524 cattgtataagacttcattcttcatgttttgaggagggcttcaagagagagaaacttgggaaatcagatgaggtaactttagg 32902442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 304
Target Start/End: Complemental strand, 29796656 - 29796578
Alignment:
Q  226 tatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaactttagg 304  Q
    |||||||| |||||||||||||||||| || ||| ||||||||| |||||||||  |  ||| |||||||||||||||||    
T  29796656 tatataaggcttcattcttcatgttttgaggaga-cttcaagagagagaaacttgagaaatcaaaggaggtaactttagg 29796578  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 7597380 - 7597462
Alignment:
Q  171 aaatcgtggcacaattagtgaaaattgtgatacga-ttttctcgggacttgtgcattatataagacttcattcttcatgtttt 252  Q
    |||||||||||||||| |||||||| | |  || | |||||||| || ||| ||| |||||||| ||||||||||||||||||    
T  7597380 aaatcgtggcacaattggtgaaaatcggggcacaatttttctcgagatttgagcactatataaggcttcattcttcatgtttt 7597462  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 8153572 - 8153622
Alignment:
Q  202 acgattttctcgggacttgtgcattatataagacttcattcttcatgtttt 252  Q
    |||||||||||||  ||||| ||||||| ||| ||||||||||||||||||    
T  8153572 acgattttctcggatcttgtacattataaaaggcttcattcttcatgtttt 8153622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 3232145 - 3232092
Alignment:
Q  226 tatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactt 279  Q
    |||||||| |||||||||||||||||| |||||||| | |||||  ||||||||    
T  3232145 tatataaggcttcattcttcatgttttgagtagagcattaagagaaagaaactt 3232092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 279
Target Start/End: Original strand, 8863333 - 8863409
Alignment:
Q  202 acgattttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactt 279  Q
    ||||||||||| |  | |||||| |||||||| ||||||||||||||||||  || |||||||||||| || ||||||    
T  8863333 acgattttctcagatcatgtgcactatataaggcttcattcttcatgttttgggt-gagcttcaagagagaaaaactt 8863409  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 278
Target Start/End: Original strand, 18141659 - 18141706
Alignment:
Q  230 taagacttcattcttcatgttttaagtagagcttcaagagtgagaaact 278  Q
    |||| ||||||||||||| |||| |||||||||||||||| ||||||||    
T  18141659 taaggcttcattcttcat-ttttgagtagagcttcaagagagagaaact 18141706  T

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Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 202 - 317
Target Start/End: Original strand, 4560904 - 4561021
Alignment:
Q  202 acgattttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatca-aggaggtaactt 300  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| || | | ||||||||| || |||||| ||  |||| ||||| ||||||    
T  4560904 acgattttctcgggacttgtgcattgtataagacttcattcttcatgtttttagaataacttcaagagagaaaaacttaggaaatcagaggagataactt 4561003  T
Q  301 tag-gttgaatgtctttg 317  Q
    ||| ||||| ||||||||    
T  4561004 tagagttgagtgtctttg 4561021  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 28671797 - 28671841
Alignment:
Q  235 cttcattcttcatgttttaagtagagcttcaagagtgagaaactt 279  Q
    |||||||||||||||||| ||||| |||||||||| |||||||||    
T  28671797 cttcattcttcatgttttgagtagggcttcaagagagagaaactt 28671841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 319
Target Start/End: Original strand, 11067134 - 11067221
Alignment:
Q  234 acttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaacttta-ggttgaatgtctttgat 319  Q
    |||||||||||||| |||| || || |||||||||| ||||||||  ||  ||| ||||||||||||||| |||||| ||||||||||    
T  11067134 acttcattcttcattttttgaggagggcttcaagagagagaaactagggaaatcaaaggaggtaactttatggttgattgtctttgat 11067221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 304
Target Start/End: Original strand, 36773387 - 36773462
Alignment:
Q  230 taagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaactttagg 304  Q
    |||||||||||||||||| ||||   |||||||||||||| ||||||||  ||  ||| |||||||||||||||||    
T  36773387 taagacttcattcttcattttttgtatagagcttcaagagagagaaactagggaaatcaaaggaggtaactttagg 36773462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 303
Target Start/End: Complemental strand, 19933 - 19854
Alignment:
Q  223 cattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatcaaggaggtaactttag 303  Q
    ||||||||| ||||||||||||| |||||| ||||| |||||||||| | ||||||| ||  |||||||||||||||||||    
T  19933 cattatatatgacttcattcttcttgttttgagtag-gcttcaagagagtgaaacttgggaaatcaaggaggtaactttag 19854  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 279
Target Start/End: Complemental strand, 21704225 - 21704109
Alignment:
Q  164 taacttgaaatcgtggcacaattagtgaaaattgtgatacgattttctcgggacttgtgcattatataagacttcattcttcatgttttaagtaga-gct 262  Q
    |||| |||||||||||||| |||||  ||||||| |  ||||||||  | |||| |||||| ||| |||||||||||| ||||||||||  ||||| |||    
T  21704225 taacgtgaaatcgtggcacgattaggtaaaattggggcacgattttgacaggacatgtgcactatttaagacttcatttttcatgttttgtgtagaggct 21704126  T
Q  263 tcaagagtgagaaactt 279  Q
    ||||||| |||||||||    
T  21704125 tcaagagagagaaactt 21704109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 279
Target Start/End: Complemental strand, 3739511 - 3739397
Alignment:
Q  164 taacttgaaatcgtggcacaattagtgaaaattgtgatacgattttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagctt 263  Q
    |||| ||||||||||||| |||  ||| |||| | |  ||||||||  |||||| |||||||||| ||||||||||||||||||||||| |||| |  ||    
T  3739511 taacgtgaaatcgtggcaaaatgtgtgtaaatcgaggcacgattttgacgggacatgtgcattatttaagacttcattcttcatgttttgagtaca-ttt 3739413  T
Q  264 caagagtgagaaactt 279  Q
    |||||| |||||||||    
T  3739412 caagagagagaaactt 3739397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 317
Target Start/End: Original strand, 6677306 - 6677394
Alignment:
Q  230 taagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaacttta-ggttgaatgtctttg 317  Q
    |||| |||||||||||||||||| ||||| |||||||||  |||||| || ||||||| ||||||||||||||| |||||| ||||||||    
T  6677306 taaggcttcattcttcatgttttgagtag-gcttcaagaaagagaaatttagggtatcaaaggaggtaactttagggttgagtgtctttg 6677394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 304
Target Start/End: Complemental strand, 36463738 - 36463657
Alignment:
Q  223 cattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatca-aggaggtaactttagg 304  Q
    |||||| |||| ||||||||||||| |||| |||||||||||||||| || |||||| ||  |||| ||||||||||||||||    
T  36463738 cattatttaaggcttcattcttcat-ttttgagtagagcttcaagagagaaaaacttgggaaatcataggaggtaactttagg 36463657  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 269
Target Start/End: Original strand, 4587792 - 4587835
Alignment:
Q  226 tatataagacttcattcttcatgttttaagtagagcttcaagag 269  Q
    |||| |||||||||||||||||||||| || |||||||||||||    
T  4587792 tataaaagacttcattcttcatgttttgaggagagcttcaagag 4587835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 257
Target Start/End: Complemental strand, 43208207 - 43208174
Alignment:
Q  224 attatataagacttcattcttcatgttttaagta 257  Q
    ||||||||||||||||||||||||||||| ||||    
T  43208207 attatataagacttcattcttcatgttttgagta 43208174  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 8871390 - 8871315
Alignment:
Q  230 taagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaactttagg 304  Q
    |||| ||||||||||||||||||  ||||||||||||||| ||||||||  || |||| ||| |||||||||||||    
T  8871390 taaggcttcattcttcatgtttttggtagagcttcaagagagagaaactagggatatcaaagcaggtaactttagg 8871315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 2263327 - 2263271
Alignment:
Q  218 ttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgaga 274  Q
    ||||||| |||||||| ||||||||||||||||||  ||||||| ||||||| ||||    
T  2263327 ttgtgcactatataaggcttcattcttcatgttttgtgtagagcgtcaagagagaga 2263271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 28265898 - 28265821
Alignment:
Q  228 tataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaactttagg 304  Q
    |||||| ||||||||||||| ||||  | ||||||||||||| ||||||||  ||  ||| |||||||||||||||||    
T  28265898 tataaggcttcattcttcattttttgggaagagcttcaagagagagaaactagggaaatcaaaggaggtaactttagg 28265821  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 25116407 - 25116455
Alignment:
Q  204 gattttctcgggacttgtgcattatataagacttcattcttcatgtttt 252  Q
    ||||||||| || | |||||| |||||||| ||||||||||||||||||    
T  25116407 gattttctcaggtcatgtgcactatataagtcttcattcttcatgtttt 25116455  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 319
Target Start/End: Original strand, 49918210 - 49918278
Alignment:
Q  253 aagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaacttta-ggttgaatgtctttgat 319  Q
    ||||||||||| ||||| ||||||||| ||  ||| ||||||||||||||| ||||||| |||||||||    
T  49918210 aagtagagcttgaagagagagaaacttgggaaatcaaaggaggtaactttagggttgaaggtctttgat 49918278  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 5611524 - 5611451
Alignment:
Q  205 attttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactt 279  Q
    ||||||||| | ||||| ||| || ||||||||||||||||||||||| |  ||||||||||||| |||||||||    
T  5611524 attttctcgagtcttgtacataatttaagacttcattcttcatgttttga-aagagcttcaagagagagaaactt 5611451  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 21156811 - 21156738
Alignment:
Q  205 attttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactt 279  Q
    ||||||||| | ||||| ||| || ||||||||||||||||||||||| |  ||||||||||||| |||||||||    
T  21156811 attttctcgagtcttgtacataatttaagacttcattcttcatgttttga-aagagcttcaagagagagaaactt 21156738  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 40519532 - 40519479
Alignment:
Q  226 tatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactt 279  Q
    |||||||| |||||||| |||||| || |||||||||||||||| |||||||||    
T  40519532 tatataaggcttcattcatcatgtattgagtagagcttcaagagagagaaactt 40519479  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 2075403 - 2075350
Alignment:
Q  226 tatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactt 279  Q
    |||||||| |||||||||||||||||| |||   |||||||||| |||||||||    
T  2075403 tatataaggcttcattcttcatgttttgagtgaggcttcaagagagagaaactt 2075350  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 9666797 - 9666754
Alignment:
Q  230 taagacttcattcttcatgttttaagtagagcttcaagagtgaga 274  Q
    |||||||||||||||||| |||| |||||||||||||||| ||||    
T  9666797 taagacttcattcttcat-ttttgagtagagcttcaagagagaga 9666754  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 279
Target Start/End: Complemental strand, 37761820 - 37761765
Alignment:
Q  223 cattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactt 279  Q
    ||||||||||||||| |||||||||||||| ||| | |||||||||| ||| |||||    
T  37761820 cattatataagactttattcttcatgtttttagttg-gcttcaagagagagtaactt 37761765  T

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