View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4140_high_9 (Length: 205)

Name: NF4140_high_9

Description: NF4140

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF4140_high_9

[»] chr8 (1 HSPs)

[»] chr1 (1 HSPs)

Target: chr8 (Bit Score: 171; Significance: 5e-92; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 171; E-Value: 5e-92

Query Start/End: Original strand, 20 - 190

Target Start/End: Original strand, 1536197 - 1536367

Alignment:

Q	20	tgcagcatatgacagtagcagaattggaacaatctaatgctagattggctgcctaatgatgttagctagaggtgcctgaaagagttataagttttgtgtg	119	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	1536197	tgcagcatatgacagtagcagaattggaacaatctaatgctagattggctgcctaatgatgttagctagaggtgcctgaaagagttataagttttgtgtg	1536296	T

Q	120	gattgtccttcatggaaagttaacgactaatgaaaggaagagtaagattcatttgagcatcccgttctgtg	190	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	1536297	gattgtccttcatggaaagttaacgactaatgaaaggaagagtaagattcatttgagcatcccgttctgtg	1536367	T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 36; E-Value: 0.00000000002

Query Start/End: Original strand, 88 - 179

Target Start/End: Original strand, 26413689 - 26413780

Alignment:

Q	88	gaggtgcctgaaagagttataagttttgtgtggattgtccttcatggaaagttaacgactaatgaaaggaagagtaagattcatttgagcat	179	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\| \| \|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|
T	26413689	gaggtgcttgaaagagttagaagttttgtgtggattgtcctttgtgagaagccgatgactaatggaagaaagagtaagatgcatttaagcat	26413780	T

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