View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4140_low_1 (Length: 486)
Name: NF4140_low_1
Description: NF4140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4140_low_1 |
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| [»] scaffold0268 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 19 - 481
Target Start/End: Original strand, 19457126 - 19457588
Alignment:
| Q |
19 |
ccttgaaaatctcgccggtagatttatgaaagaaatccaagtctccgaagcacgtgccttctacggtttccagattgcaattgaaaacatccactctgag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19457126 |
ccttgaaaatctcgccggtagatttatgaaagaaatccaagtctctgaagcacgtgccttctacggtttccagattgcaattgaaaacatccactctgag |
19457225 |
T |
|
| Q |
119 |
atgtattctcttctcctcgaaacgtatataagtgattctgctgaaaagaatcgcttatttcacgcaattgaaactattccatgtattgcnnnnnnngctg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| || |||| |
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| T |
19457226 |
atgtattctcttctcctcgaaacgtatataagcgattccgctgaaaagaatcgcttatttcatgcaattgaaacaattccatgtatcgcgaagaaagctg |
19457325 |
T |
|
| Q |
219 |
attgggcgatgaaatggatcgattcaagcgattcttttgcagaaagaatcgttgcatttgcttgtgttgaaggaatctttttctccggaagcttctgtgc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19457326 |
attgggcgatgaaatggatcgattcaagcgattcttttgcagaaagaatcgttgcgtttgcttgtgttgaaggaatctttttctccggaagcttctgtgc |
19457425 |
T |
|
| Q |
319 |
gattttttggttgaaaaagcgtggtttaatgccgggattaaccttctcaaacgagcttatttcacgcgatgaaggattacactgtgatttcgcttgtttg |
418 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
19457426 |
gattttctggttgaaaaagcgcggtttaatgccgggattaaccttctcaaacgagcttatttcacgcgacgaaggattgcactgtgatttcgcttgtttg |
19457525 |
T |
|
| Q |
419 |
ttatactcacttctacgaaagaagctaagttcagagcgcgtgaaagaaattgtctgtgctgct |
481 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
19457526 |
ttatactcacttctacgaaagaagctaagttcagagcgcgtgaaagaaattgtttgtgatgct |
19457588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0268 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 471
Target Start/End: Original strand, 22615 - 23067
Alignment:
| Q |
19 |
ccttgaaaatctcgccggtagatttatgaaagaaatccaagtctccgaagcacgtgccttctacggtttccagattgcaattgaaaacatccactctgag |
118 |
Q |
| |
|
|||||||||||| ||||| ||||| ||||||||| ||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||| |
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| T |
22615 |
ccttgaaaatcttgccggaagattcatgaaagaagtccaaatctccgaagcacgtgccttctatggtttccaaattgcaattgaaaacatccattctgag |
22714 |
T |
|
| Q |
119 |
atgtattctcttctcctcgaaacgtatataagtgattctgctgaaaagaatcgcttatttcacgcaattgaaactattccatgtattgcnnnnnnngctg |
218 |
Q |
| |
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||||| || |||||| | ||||| |||||||| ||||||||||||||||||||||||||||| |||||||| || ||||||||||| || |||| |
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|
| T |
22715 |
atgtactcccttctcattgaaacatatataagcgattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcgcgaaaaaggctg |
22814 |
T |
|
| Q |
219 |
attgggcgatgaaatggatcgattcaagcgattcttttgcagaaagaatcgttgcatttgcttgtgttgaaggaatctttttctccggaagcttctgtgc |
318 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || |||||||||||||| || || |
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|
| T |
22815 |
attgggcaatgaaatggattgattcaagcgattcttttgctgaaagaatcgttgcatttgcttgtgtagaaggaattttcttctccggaagcttttgcgc |
22914 |
T |
|
| Q |
319 |
gattttttggttgaaaaagcgtggtttaatgccgggattaaccttctcaaacgagcttatttcacgcgatgaaggattacactgtgatttcgcttgtttg |
418 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||| || ||||| | ||||||||||| ||||||||| |
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| T |
22915 |
gattttctggttgaaaaagcgcggtttaatgccagggttaacattctcaaacgagcttatttcacgtgacgaaggtctgcactgtgattttgcttgtttg |
23014 |
T |
|
| Q |
419 |
ttatactcacttctacgaaagaagctaagttcagagcgcgtgaaagaaattgt |
471 |
Q |
| |
|
|||||||||||||||| |||||| |||| ||||||||| ||||| |||||||| |
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|
| T |
23015 |
ttatactcacttctacaaaagaaactaacttcagagcgtgtgaaggaaattgt |
23067 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 471
Target Start/End: Complemental strand, 10197473 - 10197021
Alignment:
| Q |
19 |
ccttgaaaatctcgccggtagatttatgaaagaaatccaagtctccgaagcacgtgccttctacggtttccagattgcaattgaaaacatccactctgag |
118 |
Q |
| |
|
|||||||||||| ||||| ||||| ||||||||| ||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||| |
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|
| T |
10197473 |
ccttgaaaatcttgccggaagattcatgaaagaagtccaaatctccgaagcacgtgccttctatggtttccaaattgcaattgaaaacatccattctgag |
10197374 |
T |
|
| Q |
119 |
atgtattctcttctcctcgaaacgtatataagtgattctgctgaaaagaatcgcttatttcacgcaattgaaactattccatgtattgcnnnnnnngctg |
218 |
Q |
| |
|
||||| || |||||| | ||||| |||||||| ||||||||||||||||||||||||||||| |||||||| || ||||||||||| || |||| |
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|
| T |
10197373 |
atgtactcccttctcattgaaacatatataagcgattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcgcgaaaaaggctg |
10197274 |
T |
|
| Q |
219 |
attgggcgatgaaatggatcgattcaagcgattcttttgcagaaagaatcgttgcatttgcttgtgttgaaggaatctttttctccggaagcttctgtgc |
318 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || |||||||||||||| || || |
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|
| T |
10197273 |
attgggcaatgaaatggattgattcaagcgattcttttgctgaaagaatcgttgcatttgcttgtgtagaaggaattttcttctccggaagcttttgcgc |
10197174 |
T |
|
| Q |
319 |
gattttttggttgaaaaagcgtggtttaatgccgggattaaccttctcaaacgagcttatttcacgcgatgaaggattacactgtgatttcgcttgtttg |
418 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||| || ||||| | ||||||||||| ||||||||| |
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|
| T |
10197173 |
gattttctggttgaaaaagcgcggtttaatgccagggttaacattctcaaacgagcttatttcacgtgacgaaggtctgcactgtgattttgcttgtttg |
10197074 |
T |
|
| Q |
419 |
ttatactcacttctacgaaagaagctaagttcagagcgcgtgaaagaaattgt |
471 |
Q |
| |
|
|||||||||||||||| |||||| |||| ||||||||| ||||| |||||||| |
|
|
| T |
10197073 |
ttatactcacttctactaaagaaactaacttcagagcgtgtgaaggaaattgt |
10197021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 23 - 426
Target Start/End: Complemental strand, 25025961 - 25025558
Alignment:
| Q |
23 |
gaaaatctcgccggtagatttatgaaagaaatccaagtctccgaagcacgtgccttctacggtttccagattgcaattgaaaacatccactctgagatgt |
122 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| | ||| |||| ||||| ||||| |||||||| || || || || ||||||||||||||||| ||||||| |
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|
| T |
25025961 |
gaaaatctcgccggaagattcatgaaagaagttcaaatctctgaagcgcgtgctttctacgggtttcaaatcgctattgaaaacatccactcagagatgt |
25025862 |
T |
|
| Q |
123 |
attctcttctcctcgaaacgtatataagtgattctgctgaaaagaatcgcttatttcacgcaattgaaactattccatgtattgcnnnnnnngctgattg |
222 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || ||||| |||||||| |||||||| |
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|
| T |
25025861 |
attctcttctcctcgaaacgtatataagcgattctgctgaaaagaatcgattatttcacgcaattgacacaattccgtgtattgctaagaaagctgattg |
25025762 |
T |
|
| Q |
223 |
ggcgatgaaatggatcgattcaagcgattcttttgcagaaagaatcgttgcatttgcttgtgttgaaggaatctttttctccggaagcttctgtgcgatt |
322 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || |||||||||||||||||||||||| |
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|
| T |
25025761 |
ggctttgaaatggatcgattcaagcgattcttttgcagaaagaatcgttgctttcgcttgtgttgaaggaattttcttctccggaagcttctgtgcgatt |
25025662 |
T |
|
| Q |
323 |
ttttggttgaaaaagcgtggtttaatgccgggattaaccttctcaaacgagcttatttcacgcgatgaaggattacactgtgatttcgcttgtttgttat |
422 |
Q |
| |
|
|| ||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||| |
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|
| T |
25025661 |
ttctggttgaaaaaacgcggtttaatgccgggattaactttctcaaacgagcttatttcacgcgacgaaggcttacactgtgattttgcttgtttgttat |
25025562 |
T |
|
| Q |
423 |
actc |
426 |
Q |
| |
|
|||| |
|
|
| T |
25025561 |
actc |
25025558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 5971477 - 5971517
Alignment:
| Q |
119 |
atgtattctcttctcctcgaaacgtatataagtgattctgc |
159 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5971477 |
atgtattctcttctcctcgaaatgtatataagtgattctgc |
5971517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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