View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4140_low_11 (Length: 302)

Name: NF4140_low_11
Description: NF4140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4140_low_11
NF4140_low_11
[»] scaffold0483 (1 HSPs)
scaffold0483 (69-110)||(3640-3681)
[»] scaffold0109 (1 HSPs)
scaffold0109 (69-110)||(48480-48521)
[»] chr8 (2 HSPs)
chr8 (69-110)||(6787810-6787851)
chr8 (69-110)||(6765380-6765421)
[»] chr2 (1 HSPs)
chr2 (69-110)||(28620431-28620472)
[»] scaffold0018 (1 HSPs)
scaffold0018 (69-110)||(125988-126029)
[»] chr7 (2 HSPs)
chr7 (69-106)||(20027779-20027816)
chr7 (138-174)||(20027893-20027929)
[»] chr4 (1 HSPs)
chr4 (69-110)||(14694239-14694280)
[»] chr6 (1 HSPs)
chr6 (69-110)||(14647765-14647806)


Alignment Details
Target: scaffold0483 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 3681 - 3640
Alignment:
Q  69 aatgttcattttactattcaatcatttgttaatcattaacta 110  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  3681 aatgttcattttgctattcaatcatttgttaatcattaacta 3640  T

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Target: scaffold0109 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 48521 - 48480
Alignment:
Q  69 aatgttcattttactattcaatcatttgttaatcattaacta 110  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  48521 aatgttcattttgctattcaatcatttgttaatcattaacta 48480  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 6787810 - 6787851
Alignment:
Q  69 aatgttcattttactattcaatcatttgttaatcattaacta 110  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  6787810 aatgttcattttactattcaatcatttattaatcattaacta 6787851  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 6765380 - 6765421
Alignment:
Q  69 aatgttcattttactattcaatcatttgttaatcattaacta 110  Q
    ||||||||||||| ||||||||||||| ||||||||||||||    
T  6765380 aatgttcattttattattcaatcatttattaatcattaacta 6765421  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 28620431 - 28620472
Alignment:
Q  69 aatgttcattttactattcaatcatttgttaatcattaacta 110  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  28620431 aatgttcattttactattcaattatttgttaatcattaacta 28620472  T

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Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 126029 - 125988
Alignment:
Q  69 aatgttcattttactattcaatcatttgttaatcattaacta 110  Q
    |||||||||||| |||||||||||||||||||| ||||||||    
T  126029 aatgttcattttgctattcaatcatttgttaataattaacta 125988  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 20027779 - 20027816
Alignment:
Q  69 aatgttcattttactattcaatcatttgttaatcatta 106  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  20027779 aatgttcattttactattcaatcatttattaatcatta 20027816  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 20027893 - 20027929
Alignment:
Q  138 aagaaatatgtcagttcaaacacaaaaattgaaagaa 174  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  20027893 aagaaatatggcagctcaaacacaaaaattgaaagaa 20027929  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 14694280 - 14694239
Alignment:
Q  69 aatgttcattttactattcaatcatttgttaatcattaacta 110  Q
    ||||||||||||  ||||||||||||||||||||||||||||    
T  14694280 aatgttcattttgttattcaatcatttgttaatcattaacta 14694239  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 14647806 - 14647765
Alignment:
Q  69 aatgttcattttactattcaatcatttgttaatcattaacta 110  Q
    ||||||||||||  | ||||||||||||||||||||||||||    
T  14647806 aatgttcattttgtttttcaatcatttgttaatcattaacta 14647765  T

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