View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4140_low_12 (Length: 248)

Name: NF4140_low_12
Description: NF4140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4140_low_12
NF4140_low_12
[»] chr4 (22 HSPs)
chr4 (1-247)||(7907765-7908011)
chr4 (66-243)||(7877231-7877402)
chr4 (65-243)||(7774225-7774397)
chr4 (140-248)||(7904611-7904719)
chr4 (178-243)||(7813097-7813162)
chr4 (178-243)||(7822586-7822651)
chr4 (142-242)||(45366618-45366718)
chr4 (149-248)||(45372448-45372547)
chr4 (178-243)||(7800254-7800319)
chr4 (177-241)||(48156825-48156889)
chr4 (131-243)||(48902520-48902632)
chr4 (178-242)||(49044626-49044690)
chr4 (178-242)||(49048996-49049060)
chr4 (178-248)||(7771021-7771091)
chr4 (133-241)||(48735713-48735821)
chr4 (186-242)||(48898347-48898403)
chr4 (124-235)||(45385191-45385302)
chr4 (184-242)||(48170986-48171044)
chr4 (178-243)||(7238116-7238181)
chr4 (178-241)||(7789706-7789769)
chr4 (149-242)||(48862829-48862922)
chr4 (186-242)||(48148082-48148138)
[»] chr8 (5 HSPs)
chr8 (168-248)||(12199914-12199994)
chr8 (168-248)||(12444342-12444422)
chr8 (178-248)||(15348479-15348549)
chr8 (168-243)||(12194908-12194983)
chr8 (168-243)||(12439336-12439411)
[»] chr3 (3 HSPs)
chr3 (152-248)||(47452298-47452394)
chr3 (178-248)||(11006353-11006423)
chr3 (178-243)||(11024933-11024998)
[»] chr1 (4 HSPs)
chr1 (178-243)||(24340031-24340096)
chr1 (183-243)||(24309799-24309859)
chr1 (178-241)||(24322079-24322142)
chr1 (201-241)||(24366795-24366835)
[»] chr5 (2 HSPs)
chr5 (183-242)||(29712866-29712925)
chr5 (186-235)||(29687676-29687725)
[»] scaffold0508 (1 HSPs)
scaffold0508 (201-243)||(11902-11944)
[»] chr6 (2 HSPs)
chr6 (189-242)||(21980041-21980094)
chr6 (178-242)||(21015393-21015457)


Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 7907765 - 7908011
Alignment:
Q  1 tcatcatcatcatcggtttttaaaactctgcttatataagactgatcgagtggtaaattggaaacccttcctgtaaaattaaggtttacaagatggtaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7907765 tcatcatcatcatcggtttttaaaactctgcttatataagactgatcgagtggtaaattggaaacccttcctgtaaaattagggtttacaagatggtaga 7907864  T
Q  101 gagctcggaggagaagaagaagaagacgacgacactgccgtatcttcatcatgaattgattttccagatcctactgtggttgccggtgaagtctcttgca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  7907865 gagctcggaggagaagaagaagaagacgacgacactgccgtatcttcctcatgaattgattttccagatcctactgaggttgccggtgaagtctcttaca 7907964  T
Q  201 cgtttcaagtctgtttgtaagtcatggttttctcttatctctgctcc 247  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  7907965 cgtttcaagtctgttcgtaagtcatggttttctcttatctctgctcc 7908011  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 66 - 243
Target Start/End: Original strand, 7877231 - 7877402
Alignment:
Q  66 ccttcctgtaaaattaaggtttacaagatggtagagagctcggaggagaagaagaagaagacgacgacactgccgtatcttcatcatgaattgattttcc 165  Q
    |||||||||||||||| | ||||||||||||||||| ||  |||||||||||||||||||||      || ||||||||||| ||||||||||||| |||    
T  7877231 ccttcctgtaaaattaggatttacaagatggtagagtgcatggaggagaagaagaagaagac------acggccgtatcttcctcatgaattgattatcc 7877324  T
Q  166 agatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctg 243  Q
    | |||||  | ||||||| |||||||||||||  ||||||||| |   ||||||||  ||||||||||||||||||||    
T  7877325 aaatcctgatttggttgctggtgaagtctcttatacgtttcaaatgcatttgtaagctatggttttctcttatctctg 7877402  T

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Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 65 - 243
Target Start/End: Complemental strand, 7774397 - 7774225
Alignment:
Q  65 cccttcctgtaaaattaaggtttacaagatggtagagagctcggaggagaagaagaagaagacgacgacactgccgtatcttcatcatgaattgattttc 164  Q
    ||||| ||||||||||| |||||||||||||||||||||| || ||||||||||| |||||||      |||||||||||||| ||||||||||||| |     
T  7774397 ccctttctgtaaaattagggtttacaagatggtagagagcacgcaggagaagaagcagaagac------actgccgtatcttcctcatgaattgattatt 7774304  T
Q  165 cagatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctg 243  Q
    || ||| |  || || |||||||||||||||||   | |||||| | ||||||||||  ||||||||||||||||||||    
T  7774303 caaatcttgatgcggctgccggtgaagtctcttattcatttcaaatgtgtttgtaagctatggttttctcttatctctg 7774225  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 248
Target Start/End: Original strand, 7904611 - 7904719
Alignment:
Q  140 gtatcttcatcatgaattgattttccagatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatc 239  Q
    |||||||| || |||||||||| | || ||| |  |||||||||| ||||||||||||  ||||||||| | ||||||||||| ||||||||||||||||    
T  7904611 gtatcttcctcgtgaattgattattcaaatcttgatgtggttgcctgtgaagtctcttatacgtttcaaatgtgtttgtaagttatggttttctcttatc 7904710  T
Q  240 tctgctcct 248  Q
    |||| ||||    
T  7904711 tctgatcct 7904719  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 7813097 - 7813162
Alignment:
Q  178 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctg 243  Q
    ||||||||||||||| ||||  ||||||||||| ||||||||| ||||||||||||||||||||||    
T  7813097 ggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctctg 7813162  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 7822586 - 7822651
Alignment:
Q  178 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctg 243  Q
    ||||||||||||||| ||||  ||||||||||| ||||||||| ||||||||||||||||||||||    
T  7822586 ggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctctg 7822651  T

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Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 45366718 - 45366618
Alignment:
Q  142 atcttcatcatgaattgattttccagatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctc 241  Q
    |||||| ||||||||||||  |||| ||||||||  |||| || ||||||||||||  |||||||||||  ||||||||||  |||||||||||||||||    
T  45366718 atcttcctcatgaattgatgatccaaatcctactaaggttaccagtgaagtctcttatacgtttcaagtgcgtttgtaagtattggttttctcttatctc 45366619  T
Q  242 t 242  Q
    |    
T  45366618 t 45366618  T

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Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 248
Target Start/End: Complemental strand, 45372547 - 45372448
Alignment:
Q  149 tcatgaattgattttccagatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctgctcct 248  Q
    ||||||||||||  | || || |||||  ||||||||||||||||||||  ||||||||| | |||||||||||| ||||||||| ||||||||| ||||    
T  45372547 tcatgaattgatgattcaaattctactaaggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaagtcttggttttctattatctctgatcct 45372448  T

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Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 7800254 - 7800319
Alignment:
Q  178 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctg 243  Q
    ||||||||||||||| ||||  ||||||||||| ||||||||| ||||||||||||||| ||||||    
T  7800254 ggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttgtctctg 7800319  T

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Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 48156889 - 48156825
Alignment:
Q  177 tggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctc 241  Q
    ||||| |||||||||||||||  |||||||||||  ||||||||||| |||||||||||||||||    
T  48156889 tggttaccggtgaagtctcttctacgtttcaagtgcgtttgtaagtcttggttttctcttatctc 48156825  T

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Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 243
Target Start/End: Original strand, 48902520 - 48902632
Alignment:
Q  131 gacactgccgtatcttcatcatgaattgattttccagatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttt 230  Q
    ||||||||||||||| | ||||||||||||  |||| ||  | | |||||||||||| ||||||||    |||||||| | |||||||||||| ||||||    
T  48902520 gacactgccgtatctacctcatgaattgatcatccaaattttgcagtggttgccggtaaagtctctcattcgtttcaaatgtgtttgtaagtcttggttt 48902619  T
Q  231 tctcttatctctg 243  Q
    |||||||| ||||    
T  48902620 tctcttatatctg 48902632  T

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Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 49044690 - 49044626
Alignment:
Q  178 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctct 242  Q
    ||||||| |||| |||||||  ||||||||||| ||||||||||| |||||||||||||||||||    
T  49044690 ggttgccagtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctct 49044626  T

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Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 49049060 - 49048996
Alignment:
Q  178 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctct 242  Q
    |||||| ||||| |||||||  ||||||||||| ||||||||||| |||||||||||||||||||    
T  49049060 ggttgctggtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctct 49048996  T

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Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 7771021 - 7771091
Alignment:
Q  178 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctgctcct 248  Q
    ||||||||||||||||||||  | ||||||| |  ||||||||||| ||||||||||||||||||| ||||    
T  7771021 ggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatcct 7771091  T

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Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 241
Target Start/End: Complemental strand, 48735821 - 48735713
Alignment:
Q  133 cactgccgtatcttcatcatgaattgattttccagatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttc 232  Q
    ||||||||| ||| | |||||| |||||  | || || || ||| |||| |||||||||||||||   |||||||| | |||||||||||| ||||||||    
T  48735821 cactgccgtttctgcctcatgagttgatagttcaaattcttctgaggttaccggtgaagtctcttattcgtttcaaatgtgtttgtaagtcttggttttc 48735722  T
Q  233 tcttatctc 241  Q
    |||||||||    
T  48735721 tcttatctc 48735713  T

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Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 48898347 - 48898403
Alignment:
Q  186 gtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctct 242  Q
    |||||||||||| |||||||||||| |||||||||||| ||||| || |||||||||    
T  48898347 gtgaagtctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctct 48898403  T

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Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 235
Target Start/End: Complemental strand, 45385302 - 45385191
Alignment:
Q  124 agacgacgacactgccgtatcttcatcatgaattgattttccagatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtc 223  Q
    ||||||||||||||||| || | | | ||||||||||  |||| ||||||||  |||| || || ||||||||   ||||||||| || |||||||||||    
T  45385302 agacgacgacactgccgcatatgcctaatgaattgatgatccaaatcctactaaggttaccagttaagtctctcatacgtttcaaatccgtttgtaagtc 45385203  T
Q  224 atggttttctct 235  Q
     |||||||||||    
T  45385202 ttggttttctct 45385191  T

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Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 48171044 - 48170986
Alignment:
Q  184 cggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctct 242  Q
    ||||||||||||||  ||||||||| | |||||||||||| |||||| |||||||||||    
T  48171044 cggtgaagtctcttctacgtttcaaatgtgtttgtaagtcttggtttgctcttatctct 48170986  T

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Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 7238181 - 7238116
Alignment:
Q  178 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctg 243  Q
    ||||||| ||||||||||||    ||||||| | |||||||||||| |||||||||||||||||||    
T  7238181 ggttgccagtgaagtctcttatctgtttcaaatgtgtttgtaagtcttggttttctcttatctctg 7238116  T

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Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 7789706 - 7789769
Alignment:
Q  178 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctc 241  Q
    ||||||||||||||||||||  | ||||||| |  ||||||||||| ||||||||| |||||||    
T  7789706 ggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttcttttatctc 7789769  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 242
Target Start/End: Original strand, 48862829 - 48862922
Alignment:
Q  149 tcatgaattgattttccagatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctct 242  Q
    ||||||||||||  |||  ||||| ||  |||| |||||||||||||||   |||||||| |  ||||| ||||| ||||||||||||||||||    
T  48862829 tcatgaattgatcatcctaatcctgctaaggttaccggtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttatctct 48862922  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 48148138 - 48148082
Alignment:
Q  186 gtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctct 242  Q
    ||||||||||||   |||||||| | ||| |||||||| ||||||||||||||||||    
T  48148138 gtgaagtctcttattcgtttcaaatgtgtctgtaagtcttggttttctcttatctct 48148082  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 12199914 - 12199994
Alignment:
Q  168 atcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctgctcct 248  Q
    ||||| ||| ||||||||||||||||||||  | ||||||| | |||||||||||||||||||||||||||||||| ||||    
T  12199914 atcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcct 12199994  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 12444342 - 12444422
Alignment:
Q  168 atcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctgctcct 248  Q
    ||||| ||| ||||||||||||||||||||  | ||||||| | |||||||||||||||||||||||||||||||| ||||    
T  12444342 atcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcct 12444422  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 15348479 - 15348549
Alignment:
Q  178 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctgctcct 248  Q
    |||| |||||||||||||||  ||||||||| |  ||||||||||| ||||||||||||||||||| ||||    
T  15348479 ggttaccggtgaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatcct 15348549  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 12194908 - 12194983
Alignment:
Q  168 atcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctg 243  Q
    ||||| ||| ||||||||||||||||||||  | ||||||| |   |||||||||||||||| |||||||||||||    
T  12194908 atcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctg 12194983  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 12439336 - 12439411
Alignment:
Q  168 atcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctg 243  Q
    ||||| ||| ||||||||||||||||||||  | ||||||| |   |||||||||||||||| |||||||||||||    
T  12439336 atcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctg 12439411  T

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Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 248
Target Start/End: Complemental strand, 47452394 - 47452298
Alignment:
Q  152 tgaattgattttccagatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctgctcct 248  Q
    |||||||||  |||||||| |  || ||||||||||||||||||||| ||| |||||||   ||| |||||||||||||||||||||||||| ||||    
T  47452394 tgaattgataatccagatcttggtgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcct 47452298  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 178 - 248
Target Start/End: Complemental strand, 11006423 - 11006353
Alignment:
Q  178 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctgctcct 248  Q
    |||||||||||||||| |||  ||||||||||| ||||||||||||||||||  |||||||||||| ||||    
T  11006423 ggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctgatcct 11006353  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 11024998 - 11024933
Alignment:
Q  178 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctg 243  Q
    |||| ||||||||||||||   ||||||||| |  |||||||||||||||||  ||||||||||||    
T  11024998 ggttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcatggttagctcttatctctg 11024933  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 24340031 - 24340096
Alignment:
Q  178 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctg 243  Q
    |||| ||||| |||||||||   |||||||| ||||||||||||||||||||||| ||||||||||    
T  24340031 ggttaccggttaagtctcttattcgtttcaaatctgtttgtaagtcatggttttcacttatctctg 24340096  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 24309799 - 24309859
Alignment:
Q  183 ccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctg 243  Q
    ||||| |||||||||   |||||||| || |||||||||| ||||||||||||||||||||    
T  24309799 ccggttaagtctcttattcgtttcaaatccgtttgtaagttatggttttctcttatctctg 24309859  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 24322079 - 24322142
Alignment:
Q  178 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctc 241  Q
    |||||| |||||||||||||   |||||||| |  ||||||||||| |||||||||||||||||    
T  24322079 ggttgctggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 24322142  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 24366795 - 24366835
Alignment:
Q  201 cgtttcaagtctgtttgtaagtcatggttttctcttatctc 241  Q
    |||||||| | |||||| |||||||||||||||||||||||    
T  24366795 cgtttcaaatgtgtttgcaagtcatggttttctcttatctc 24366835  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 29712925 - 29712866
Alignment:
Q  183 ccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctct 242  Q
    |||||||||||||||   ||||||||||  |||||||||| |||||||||||||||||||    
T  29712925 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 29712866  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 29687676 - 29687725
Alignment:
Q  186 gtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctct 235  Q
    ||||||||||||  ||| ||||||| |||||||||||| |||||||||||    
T  29687676 gtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctct 29687725  T

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Target: scaffold0508 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 11902 - 11944
Alignment:
Q  201 cgtttcaagtctgtttgtaagtcatggttttctcttatctctg 243  Q
    |||||||| || |||||||||||||||||||||||||||||||    
T  11902 cgtttcaaatccgtttgtaagtcatggttttctcttatctctg 11944  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 21980094 - 21980041
Alignment:
Q  189 aagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctct 242  Q
    ||||||||  |||||||||||| |||||||||||| ||||||||||| ||||||    
T  21980094 aagtctctctcacgtttcaagtgtgtttgtaagtcttggttttctctcatctct 21980041  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 21015393 - 21015457
Alignment:
Q  178 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctct 242  Q
    |||| ||||| | |||||||  ||||||||||| ||||||||||| || ||||||||||||||||    
T  21015393 ggttaccggtcatgtctcttctacgtttcaagtgtgtttgtaagttattgttttctcttatctct 21015457  T

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