View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4140_low_2 (Length: 425)
Name: NF4140_low_2
Description: NF4140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4140_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 19 - 417
Target Start/End: Original strand, 36684522 - 36684920
Alignment:
| Q |
19 |
cttctaaccatattgttgaagtcaatcttcccaacaaaacagagatctgtgaattccaaccataacaaattaagttatatatgtcaatcatttctatgga |
118 |
Q |
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| T |
36684522 |
cttctaaccatattgttgaagtcaatcttcccaacaaaatagagatctgtggattccaaccataacaaattaagttatatatgtcaatcatttctatgga |
36684621 |
T |
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| Q |
119 |
ttgtaagcaatacaaatatgctatttagatagagtcaacaaggtaatgagatgaagggtaacacttttttatacaacccaaatcctttaccacaatttca |
218 |
Q |
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| T |
36684622 |
ttgtaagcaatacaaatatgctatttagatagagtcaacaaggtaatgagatgaagggtaacacttttttatacaacccaaatcctttaccacaatttca |
36684721 |
T |
|
| Q |
219 |
ttgggaagctagatggctttggactgttcgattaagagagaaattttttaagattatgagagatcctctataatctaacggggtcttctgcatcgtaaag |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36684722 |
ttgggaagctagatggctttggactgttcgattaagagagaaaatttttaagattatgagagatcctctataatctaacggggtcttctgcatcgtaaag |
36684821 |
T |
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| Q |
319 |
ccaaatgtagagaatttaatttgtgttttatagacttttttaaatcttcttttaatatcgatctaaaccatcacggctcattaagttagtccctttgct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36684822 |
ccaaatgtagagaatttaatttgtgttttatagacttttttaaatcttcttttaatatcgatctaaactatcacggctcattaagttagtccctttgct |
36684920 |
T |
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