View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4140_low_3 (Length: 414)
Name: NF4140_low_3
Description: NF4140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4140_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 204 - 399
Target Start/End: Original strand, 1494656 - 1494851
Alignment:
| Q |
204 |
atggttacaaatgtcaccacacatatttacttttaaataatttattattccaaaaggtcaatgagtcacaagtttgatcttgaaaaatactttaatgtgt |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1494656 |
atggttacaaatgtcaccacacatatttacttttaaataatttattattccaaaaggtcaatgagtcacaagtttgatcttgaaaaatactttaatgtgc |
1494755 |
T |
|
| Q |
304 |
cacttcaaaattgtttcaatcataattattcgtcagtcactaaaagattaaaattagccatgtttatacgtcataaattagccatgtttctgtcat |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1494756 |
cacttcaaaattgtttcaatcataattattcgtcagtcactaaaagattaaacttagccatgtttatacgtcataaattagccatgtttctgtcat |
1494851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 13 - 399
Target Start/End: Original strand, 1532612 - 1532972
Alignment:
| Q |
13 |
tcatcacttgtgttttatgcaatcctttgttcaaattccgtcaaacagtacacgtcataattaaattttaattttccaactaannnnnnnnaattataat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| || |||| ||| | |||| |||| |
|
|
| T |
1532612 |
tcatcacttgtgttttatgcaatcctttgttcaaattccgtcaaaca-----cgtcataa----attatagttttacaattt-ttttttttaattctaat |
1532701 |
T |
|
| Q |
113 |
aaatttgtaatcaaattaaaaattgttctc--catgcaattttaaaaacgggaccgaaatgtttcaccaaaaacacatagagattgtcaacacatggtta |
210 |
Q |
| |
|
|||||||| |||||||||||||||| |||| |||| ||||| || | ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1532702 |
aaatttgttatcaaattaaaaattggtctcaccatggaatttgaata-cgggaccgaaatgtttcaccaaaaacacata-aga----------------- |
1532782 |
T |
|
| Q |
211 |
caaatgtc-accacacatatttacttttaaataatttattattccaaaaggtcaatgagtcacaagtttgatcttgaaaaatactttaatgtgtcacttc |
309 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1532783 |
caaatgtccaccacacatatttacttttaaataatttattattcaaaaaggtcaatgagtcacaagtttgatcttgaaaaatactttaatgtgccacttc |
1532882 |
T |
|
| Q |
310 |
aaaattgtttcaatcataattattcgtcagtcactaaaagattaaaattagccatgtttatacgtcataaattagccatgtttctgtcat |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1532883 |
aaaattgtttcaatcataattattcgtcagtcactaaaagattaaacttagccatgtttatacgtcataaattagccatgtttctgtcat |
1532972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 368
Target Start/End: Original strand, 1516370 - 1516403
Alignment:
| Q |
335 |
gtcagtcactaaaagattaaaattagccatgttt |
368 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |
|
|
| T |
1516370 |
gtcagtcactaaaagattaaaattaaccatgttt |
1516403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University