View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4140_low_4 (Length: 396)
Name: NF4140_low_4
Description: NF4140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4140_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 909522 - 909825
Alignment:
| Q |
19 |
aacagccactcccctaacacgcagacccggagtataaaaacgaagacttgctgattgattatagcaatcttgagattgcaacaccatttttgcaaaacaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
909522 |
aacagccactcccctaacacgcagacccggagtataaaaacgaagacttg---attgattatagcaatcttgagattgcaacaccatttttgtaaaacaa |
909618 |
T |
|
| Q |
119 |
acaaggagacactttaaacctactcaaactccatgtcaatataacatcttaatctgatatactacatcatccacattgattcaagaaaataagaataatt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
909619 |
acaaggagacactttaaacctactcaaactccatgtcaatataacatcttaatctgatatactatatcatccacattgattcaagaaaataagaataatt |
909718 |
T |
|
| Q |
219 |
ggatgcagatcaaaatatagtttataatactgaagattaacagtaacaaacatgcagcaataagtctttctacaccatagagtcaactgtcaagctctta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
909719 |
ggatgcagatcaaaatatagtttataatactgaagattaacagtaacaaacatgcagcaataagtctttctacaccatagagtcaactgtcaagctctta |
909818 |
T |
|
| Q |
319 |
cacatag |
325 |
Q |
| |
|
||||||| |
|
|
| T |
909819 |
cacatag |
909825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University