View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4140_low_5 (Length: 346)

Name: NF4140_low_5
Description: NF4140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4140_low_5
NF4140_low_5
[»] chr2 (7 HSPs)
chr2 (16-335)||(15504106-15504431)
chr2 (126-335)||(15628301-15628510)
chr2 (126-335)||(15611219-15611428)
chr2 (129-286)||(15658106-15658263)
chr2 (123-276)||(15523779-15523932)
chr2 (126-335)||(15648858-15649067)
chr2 (126-334)||(15536863-15537071)


Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 16 - 335
Target Start/End: Original strand, 15504106 - 15504431
Alignment:
Q  16 aaaatgaaaatttaaatcattctaaagattgcatatc-----ccaattgagtgaatgcgtcaaatttttactcgaacaatacaatcaagtcttaaaattt 110  Q
    |||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  15504106 aaaatgaaaatttaaatcattctaaagattgcatatcatatgccaattgagtgaatgcgtcaaatttgtactccaacaatacaatcaagtcttaaaattt 15504205  T
Q  111 tgaa-taaatgcaaaaacttaacctggcaagcttctcccacatttcctttgccgtctggcatcttgaaattttctcaagataatctgaatttaaagcaca 209  Q
    |||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15504206 tgaaataaattgaaaaacttaacctggcaagcttctcccacatttcctttgccgtctggcatcttgaaattttctcaagataatctgaatttaaagcaca 15504305  T
Q  210 acgtaaaatatgtttggcttttgcttcttgttccataatattcttatcttcatcattgaattgatcttcagatttcacccattcattaccatctatcatt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  15504306 acgtaaaatatgtttggcttttgcttcttgttccataatattcttatcttcatcattgaattgatcttcagatttcaccaattcattaccatctatcatt 15504405  T
Q  310 attttgggaatttttggtccattctt 335  Q
     |||||||||||||||||||||||||    
T  15504406 gttttgggaatttttggtccattctt 15504431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 126 - 335
Target Start/End: Original strand, 15628301 - 15628510
Alignment:
Q  126 acttaacctggcaagcttctcccacatttcctttgccgtctggcatcttgaaattttctcaagataatctgaatttaaagcacaacgtaaaatatgtttg 225  Q
    |||||||||| |||||| ||||||||||||||| || ||||| || ||||||||| | | ||||| ||||| |||||| ||||||| |||||||| ||||    
T  15628301 acttaacctgtcaagctcctcccacatttccttggctgtctgacaacttgaaattcttttaagatcatctggatttaaggcacaacataaaatatttttg 15628400  T
Q  226 gcttttgcttcttgttccataatattcttatcttcatcattgaattgatcttcagatttcacccattcattaccatctatcattattttgggaatttttg 325  Q
    |||||||||||| ||||||   | |||||||||||| ||||||||| ||||||||||||| |  || |  ||||||||||||||||||||||||| ||||    
T  15628401 gcttttgcttctagttccacgttcttcttatcttcaccattgaattcatcttcagatttctctgatgctataccatctatcattattttgggaatatttg 15628500  T
Q  326 gtccattctt 335  Q
    ||||||||||    
T  15628501 gtccattctt 15628510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 126 - 335
Target Start/End: Original strand, 15611219 - 15611428
Alignment:
Q  126 acttaacctggcaagcttctcccacatttcctttgccgtctggcatcttgaaatt-ttctcaagataatctgaatttaaagcacaacgtaaaatatgttt 224  Q
    ||||||| || | |||| ||||||||||||||||||||| ||||| ||||||||| |||| | ||| |||||  ||||| ||||||  |||||||| |||    
T  15611219 acttaacttgtcgagctcctcccacatttcctttgccgtatggcaacttgaaattcttctta-gatcatctgggtttaaggcacaatataaaatattttt 15611317  T
Q  225 ggcttttgcttcttgttccataatattcttatcttcatcattgaattgatcttcagatttcacccattcattaccatctatcattattttgggaattttt 324  Q
    ||||||||||||| ||||||| || |||||||||||||||||||||| ||||||||||||| || | || | ||||| ||| ||| |||| ||||||||     
T  15611318 ggcttttgcttctcgttccatgatcttcttatcttcatcattgaattcatcttcagatttctccaactcttcaccatgtattattttttttggaattttc 15611417  T
Q  325 ggtccattctt 335  Q
    |||||||||||    
T  15611418 ggtccattctt 15611428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 129 - 286
Target Start/End: Original strand, 15658106 - 15658263
Alignment:
Q  129 taacctggcaagcttctcccacatttcctttgccgtctggcatcttgaaattttctcaagataatctgaatttaaagcacaacgtaaaatatgtttggct 228  Q
    ||||||| |||||| |||||||||||||||||  ||||| || ||||||||| | ||||||| ||||| |||||  ||||||  |||||||| |||||||    
T  15658106 taacctgtcaagctcctcccacatttcctttgatgtctgacaacttgaaattctttcaagatcatctggatttatggcacaatataaaatatttttggct 15658205  T
Q  229 tttgcttcttgttccataatattcttatcttcatcattgaattgatcttcagatttca 286  Q
    |||||||||||||||||  | ||  |||||||||||||||||| ||||||||||||||    
T  15658206 tttgcttcttgttccatgttcttgatatcttcatcattgaattcatcttcagatttca 15658263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 123 - 276
Target Start/End: Original strand, 15523779 - 15523932
Alignment:
Q  123 aaaacttaacctggcaagcttctcccacatttcctttgccgtctggcatcttgaaattttctcaagataatctgaatttaaagcacaacgtaaaatatgt 222  Q
    |||||||||| || ||||||||||||| | ||||||||||||||| || ||| ||||| ||| ||||| ||||| |||||  ||||||| |||||||| |    
T  15523779 aaaacttaacttgtcaagcttctcccatacttcctttgccgtctgacaacttaaaattctcttaagatcatctggatttatggcacaacataaaatattt 15523878  T
Q  223 ttggcttttgcttcttgttccataatattcttatcttcatcattgaattgatct 276  Q
    || |||||| ||||| ||||||| || ||| |||||||||||||||||| ||||    
T  15523879 ttagcttttacttctggttccatgatcttcctatcttcatcattgaattcatct 15523932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 126 - 335
Target Start/End: Original strand, 15648858 - 15649067
Alignment:
Q  126 acttaacctggcaagcttctcccacatttcctttgccgtctggcatcttgaaattttctcaagataatctgaatttaaagcacaacgtaaaatatgtttg 225  Q
    ||||||| || |||||| ||||||||||| ||| || ||||| || ||||||||| ||| || || ||||  |||||  ||||||  |||||||| ||||    
T  15648858 acttaacttgtcaagctgctcccacattttcttggctgtctgacaacttgaaattctcttaaaatcatcttgatttatggcacaagataaaatatttttg 15648957  T
Q  226 gcttttgcttcttgttccataatattcttatcttcatcattgaattgatcttcagatttcacccattcattaccatctatcattattttgggaatttttg 325  Q
    ||||||||||||||||||||  | ||  ||||||| |||||||||| |||||||||||||| |  |||   ||||| ||  | | |||| ||||||||||    
T  15648958 gcttttgcttcttgttccatgttcttgatatcttcttcattgaattcatcttcagatttcaacacttctcgaccatttaataatttttttggaatttttg 15649057  T
Q  326 gtccattctt 335  Q
    ||||||||||    
T  15649058 gtccattctt 15649067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 126 - 334
Target Start/End: Original strand, 15536863 - 15537071
Alignment:
Q  126 acttaacctggcaagcttctcccacatttcctttgccgtctggcatcttgaaattttctcaagataatctgaatttaaagcacaacgtaaaatatgtttg 225  Q
    |||||||||| | |||| ||||||||||||||| ||||| ||||| ||||||||| |  |||||| ||  |  ||||| ||||||  |||||||  ||||    
T  15536863 acttaacctgtcgagctcctcccacatttccttagccgtatggcaacttgaaattcttccaagatcattcgggtttaaggcacaatataaaatagttttg 15536962  T
Q  226 gcttttgcttcttgttccataatattcttatcttcatcattgaattgatcttcagatttcacccattcattaccatctatcattattttgggaatttttg 325  Q
    |||||||||||| |||||||  | ||| |||||||||||||||||| |||| | ||||||| |  ||| | ||||| ||| | | |||| |||| |||||    
T  15536963 gcttttgcttctagttccatgttcttcatatcttcatcattgaattcatctaccgatttcaacacttcttcaccatttattaatttttttggaagttttg 15537062  T
Q  326 gtccattct 334  Q
    |||||||||    
T  15537063 gtccattct 15537071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University