View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4140_low_7 (Length: 339)

Name: NF4140_low_7
Description: NF4140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4140_low_7
NF4140_low_7
[»] chr8 (20 HSPs)
chr8 (25-329)||(38404956-38405262)
chr8 (25-148)||(38629473-38629597)
chr8 (25-150)||(35467168-35467293)
chr8 (25-148)||(14834720-14834843)
chr8 (25-143)||(37114242-37114361)
chr8 (25-150)||(38520015-38520141)
chr8 (18-151)||(12234462-12234597)
chr8 (25-150)||(15882197-15882324)
chr8 (25-106)||(40891054-40891136)
chr8 (64-117)||(29781047-29781100)
chr8 (25-148)||(17426676-17426802)
chr8 (25-117)||(23940852-23940946)
chr8 (28-148)||(8210322-8210443)
chr8 (64-117)||(10778687-10778740)
chr8 (27-143)||(24211328-24211445)
chr8 (64-143)||(33100733-33100812)
chr8 (64-106)||(4262064-4262106)
chr8 (22-105)||(5356168-5356253)
chr8 (68-117)||(4035771-4035820)
chr8 (68-105)||(40393765-40393802)
[»] chr6 (17 HSPs)
chr6 (25-148)||(29609000-29609124)
chr6 (25-143)||(8091066-8091185)
chr6 (25-148)||(885384-885508)
chr6 (25-151)||(21379989-21380116)
chr6 (25-150)||(13439692-13439819)
chr6 (25-119)||(31764373-31764468)
chr6 (25-117)||(3369015-3369108)
chr6 (27-116)||(15546663-15546753)
chr6 (27-143)||(4238856-4238975)
chr6 (25-149)||(4890528-4890654)
chr6 (65-116)||(20501737-20501788)
chr6 (64-117)||(11687231-11687284)
chr6 (64-116)||(13172661-13172713)
chr6 (39-85)||(34522322-34522369)
chr6 (64-102)||(7808654-7808692)
chr6 (25-105)||(14393603-14393687)
chr6 (25-152)||(18998164-18998293)
[»] scaffold0122 (1 HSPs)
scaffold0122 (25-151)||(45830-45957)
[»] chr1 (42 HSPs)
chr1 (25-151)||(2125118-2125245)
chr1 (25-149)||(19954959-19955084)
chr1 (25-149)||(5189467-5189592)
chr1 (64-151)||(42561383-42561470)
chr1 (25-149)||(3607777-3607902)
chr1 (25-149)||(27240972-27241097)
chr1 (25-148)||(2854580-2854704)
chr1 (64-148)||(9895252-9895336)
chr1 (25-148)||(48954262-48954386)
chr1 (38-148)||(19797042-19797153)
chr1 (25-143)||(23698550-23698669)
chr1 (27-143)||(50162588-50162706)
chr1 (40-147)||(28243953-28244066)
chr1 (25-116)||(14387063-14387155)
chr1 (25-150)||(15324623-15324750)
chr1 (25-106)||(6079425-6079507)
chr1 (25-85)||(49284342-49284403)
chr1 (64-117)||(50627161-50627214)
chr1 (38-117)||(1387808-1387888)
chr1 (25-143)||(9978099-9978219)
chr1 (58-110)||(16755262-16755314)
chr1 (25-115)||(27670175-27670266)
chr1 (25-150)||(47940618-47940745)
chr1 (46-116)||(21930411-21930483)
chr1 (73-149)||(36880287-36880363)
chr1 (27-117)||(42010450-42010540)
chr1 (25-105)||(957630-957712)
chr1 (25-146)||(35547748-35547870)
chr1 (64-106)||(48645102-48645144)
chr1 (25-116)||(4299440-4299535)
chr1 (64-116)||(27928385-27928438)
chr1 (28-111)||(2302439-2302523)
chr1 (64-117)||(27926338-27926393)
chr1 (25-100)||(29598370-29598446)
chr1 (42-97)||(5683687-5683742)
chr1 (25-150)||(51789645-51789769)
chr1 (64-117)||(26208454-26208508)
chr1 (64-150)||(28447961-28448047)
chr1 (58-116)||(28431784-28431844)
chr1 (25-106)||(40647157-40647241)
chr1 (64-144)||(22339072-22339152)
chr1 (87-151)||(49285086-49285150)
[»] scaffold0653 (1 HSPs)
scaffold0653 (27-151)||(3443-3568)
[»] chr7 (32 HSPs)
chr7 (27-151)||(9285764-9285889)
chr7 (27-151)||(9289831-9289956)
chr7 (25-117)||(30259114-30259207)
chr7 (25-143)||(3953090-3953209)
chr7 (25-150)||(30594690-30594816)
chr7 (26-117)||(34052309-34052401)
chr7 (25-150)||(24836017-24836143)
chr7 (27-149)||(16876506-16876629)
chr7 (25-143)||(29277842-29277960)
chr7 (25-151)||(31231662-31231791)
chr7 (25-150)||(37093765-37093891)
chr7 (55-148)||(40596764-40596857)
chr7 (25-116)||(40358146-40358238)
chr7 (64-143)||(35339366-35339445)
chr7 (25-111)||(45997556-45997643)
chr7 (25-106)||(31521573-31521655)
chr7 (64-117)||(38883251-38883304)
chr7 (64-148)||(10936558-10936642)
chr7 (25-150)||(20184286-20184413)
chr7 (64-123)||(25742519-25742578)
chr7 (64-143)||(35665704-35665783)
chr7 (25-134)||(39617889-39618000)
chr7 (64-150)||(48103365-48103451)
chr7 (25-111)||(12142228-12142316)
chr7 (66-117)||(7955011-7955062)
chr7 (30-96)||(22723281-22723348)
chr7 (80-143)||(38528394-38528457)
chr7 (89-143)||(24123759-24123813)
chr7 (58-108)||(28723565-28723615)
chr7 (25-105)||(33749685-33749767)
chr7 (80-150)||(38528516-38528586)
chr7 (64-118)||(24123843-24123899)
[»] chr4 (26 HSPs)
chr4 (25-149)||(1298910-1299035)
chr4 (25-148)||(13204376-13204500)
chr4 (25-148)||(27434609-27434733)
chr4 (25-116)||(4895003-4895095)
chr4 (25-150)||(20435188-20435314)
chr4 (25-143)||(24969589-24969711)
chr4 (25-116)||(35360707-35360799)
chr4 (25-143)||(530717-530836)
chr4 (27-143)||(18417661-18417778)
chr4 (25-149)||(47465033-47465157)
chr4 (26-147)||(2272367-2272488)
chr4 (25-150)||(4552782-4552908)
chr4 (25-149)||(24915842-24915971)
chr4 (25-105)||(24294509-24294590)
chr4 (31-117)||(28809901-28809988)
chr4 (25-143)||(55107528-55107647)
chr4 (66-148)||(16995644-16995726)
chr4 (25-150)||(32318768-32318894)
chr4 (64-150)||(52824236-52824322)
chr4 (25-116)||(4688295-4688388)
chr4 (25-117)||(21048753-21048845)
chr4 (25-105)||(23928615-23928696)
chr4 (60-149)||(36860655-36860744)
chr4 (25-116)||(42274540-42274633)
chr4 (38-148)||(3422490-3422601)
chr4 (89-143)||(42020203-42020257)
[»] chr3 (43 HSPs)
chr3 (25-149)||(3970539-3970664)
chr3 (27-150)||(12789603-12789727)
chr3 (25-148)||(21969205-21969329)
chr3 (25-148)||(21991641-21991765)
chr3 (25-143)||(13078211-13078330)
chr3 (25-117)||(12838107-12838200)
chr3 (25-149)||(45487797-45487922)
chr3 (25-147)||(42105431-42105554)
chr3 (64-148)||(25488429-25488513)
chr3 (64-148)||(25561010-25561094)
chr3 (25-148)||(26906453-26906577)
chr3 (48-151)||(46664172-46664276)
chr3 (29-143)||(10017118-10017233)
chr3 (25-143)||(36278804-36278923)
chr3 (64-143)||(36822848-36822927)
chr3 (38-148)||(37506187-37506298)
chr3 (40-116)||(38125242-38125319)
chr3 (25-117)||(43150510-43150603)
chr3 (25-143)||(10254572-10254692)
chr3 (25-148)||(32237442-32237566)
chr3 (25-116)||(44920694-44920786)
chr3 (64-151)||(10441346-10441433)
chr3 (25-143)||(45712951-45713070)
chr3 (25-117)||(25446279-25446373)
chr3 (64-117)||(36329268-36329321)
chr3 (25-116)||(44611429-44611521)
chr3 (25-106)||(55340341-55340424)
chr3 (26-151)||(1476600-1476726)
chr3 (25-149)||(4072321-4072447)
chr3 (25-117)||(22101194-22101288)
chr3 (25-116)||(13724035-13724128)
chr3 (64-117)||(36657521-36657574)
chr3 (25-143)||(8831744-8831864)
chr3 (25-87)||(35368793-35368856)
chr3 (65-148)||(39850434-39850517)
chr3 (25-117)||(22176138-22176232)
chr3 (25-147)||(46222076-46222200)
chr3 (64-143)||(5529895-5529975)
chr3 (40-106)||(10117556-10117624)
chr3 (25-117)||(50099462-50099557)
chr3 (38-147)||(26976903-26977013)
chr3 (27-108)||(39677324-39677406)
chr3 (28-143)||(43639132-43639249)
[»] chr5 (28 HSPs)
chr5 (26-149)||(35806933-35807057)
chr5 (22-116)||(12744857-12744952)
chr5 (27-148)||(21259780-21259902)
chr5 (22-116)||(12807942-12808037)
chr5 (25-149)||(4265980-4266105)
chr5 (25-153)||(43539102-43539230)
chr5 (25-148)||(1138558-1138682)
chr5 (25-146)||(8364678-8364800)
chr5 (25-111)||(1456070-1456157)
chr5 (25-143)||(13754339-13754458)
chr5 (64-117)||(21261973-21262026)
chr5 (25-117)||(37552356-37552449)
chr5 (25-117)||(37655200-37655292)
chr5 (25-105)||(18236508-18236591)
chr5 (64-151)||(15855839-15855926)
chr5 (62-116)||(12191423-12191477)
chr5 (64-150)||(35420700-35420786)
chr5 (64-117)||(16472985-16473038)
chr5 (25-149)||(20476429-20476554)
chr5 (64-143)||(24397333-24397413)
chr5 (64-116)||(42522908-42522960)
chr5 (27-143)||(1164845-1164963)
chr5 (25-117)||(35276340-35276434)
chr5 (72-116)||(10132313-10132357)
chr5 (25-105)||(33629393-33629476)
chr5 (17-116)||(19976292-19976393)
chr5 (22-77)||(780839-780895)
chr5 (60-116)||(16157611-16157667)
[»] scaffold0107 (1 HSPs)
scaffold0107 (25-151)||(51059-51186)
[»] chr2 (27 HSPs)
chr2 (25-151)||(9933617-9933744)
chr2 (25-149)||(16705731-16705856)
chr2 (25-148)||(3116875-3116999)
chr2 (25-148)||(9281395-9281519)
chr2 (27-149)||(45408623-45408746)
chr2 (25-117)||(12850590-12850683)
chr2 (25-117)||(27920602-27920695)
chr2 (64-148)||(34490455-34490539)
chr2 (25-150)||(42713825-42713952)
chr2 (25-138)||(2818675-2818789)
chr2 (64-117)||(24101920-24101973)
chr2 (25-116)||(9850806-9850897)
chr2 (64-119)||(29229452-29229507)
chr2 (64-119)||(29342752-29342807)
chr2 (64-143)||(34455889-34455968)
chr2 (90-149)||(37340964-37341023)
chr2 (64-143)||(39243071-39243150)
chr2 (25-116)||(1924028-1924121)
chr2 (25-105)||(6605777-6605858)
chr2 (64-148)||(20892883-20892968)
chr2 (64-147)||(7116370-7116453)
chr2 (68-147)||(22346467-22346546)
chr2 (28-117)||(23835906-23835997)
chr2 (64-102)||(22269767-22269805)
chr2 (64-143)||(7737068-7737148)
chr2 (25-85)||(43476008-43476069)
chr2 (94-151)||(43858552-43858609)
[»] scaffold0086 (1 HSPs)
scaffold0086 (25-149)||(48124-48249)
[»] scaffold0595 (1 HSPs)
scaffold0595 (68-136)||(5712-5780)
[»] scaffold0018 (1 HSPs)
scaffold0018 (25-94)||(138325-138395)
[»] scaffold0006 (1 HSPs)
scaffold0006 (66-123)||(72361-72418)
[»] scaffold0188 (1 HSPs)
scaffold0188 (25-148)||(7085-7209)
[»] scaffold0137 (1 HSPs)
scaffold0137 (27-111)||(10152-10236)
[»] scaffold0163 (2 HSPs)
scaffold0163 (25-143)||(1987-2107)
scaffold0163 (94-151)||(1935-1992)


Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 25 - 329
Target Start/End: Complemental strand, 38405262 - 38404956
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaa-gatgtatttttagttaagaactatacaaaaagtactt 122  Q
    ||||||||||   |||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  38405262 actaaattcataatgattttcttaaattcgtaattttctcaaagtttgttatatccaaaaaaagatgtatttttagttaagaaccatacaaaaagtactt 38405163  T
Q  123 acataattgtacctaaattttgtccttttgatgcgagtaaaatttgaagcttaatcttaaagaagatacgctcttcaagcaatacacggaagaataacaa 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38405162 acataattgtacctaaattttgtccttttgatgcgagtaaaatttgaagcttaatcttaaagaagatacgctcttcaagcaatacccggaagaataacaa 38405063  T
Q  223 cttcgatcaatatatacaatgaaatacacatatagtcaattgatgaagaaatctcgtggttgaacctaaggcatacgtgatgtgcgcataatgattaatc 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38405062 cttcgatcaatatatacaatgaaatacacatatagtcaattgatgaagaaatctcgtggttgaacctaaggcataagtgatgtgcgcataatgattaatc 38404963  T
Q  323 gtctgtg 329  Q
    |||||||    
T  38404962 gtctgtg 38404956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 38629597 - 38629473
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||| |||||| || |||||| ||||||| | ||||||| |||||||||||||| |||||||||||||||||||| |||| ||||| | |||    
T  38629597 actaaattcaccatgatttcctcaaattcataattttctcaaagtttattatatccaaaaaatatgtatttttagttaagaaccatacgaaaagcattta 38629498  T
Q  124 cataattgtacctaaattttgtcct 148  Q
     | |||||||| |||||||| ||||    
T  38629497 aagaattgtacttaaattttctcct 38629473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 35467293 - 35467168
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttt-ttaaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||| | ||||||  |||||| | ||||||| |||||||||||||  |||||||||||||||||||||||||||||| | ||||||||||  ||    
T  35467293 actaaattcatcatgatttctttaaatccataattttcttaaagtttgttac-tccaaaaaagatgtatttttagttaagaaccacacaaaaagtatcta 35467195  T
Q  124 cataattgtacctaaattttgtccttt 150  Q
     | |||||||||||| |||||||||||    
T  35467194 aagaattgtacctaagttttgtccttt 35467168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 25 - 148
Target Start/End: Original strand, 14834720 - 14834843
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaattttttaaagtttgttatatccaaaaaagatgtatttttagtt--aagaactatacaaaaagtactt 122  Q
    |||||||||||| |||||||||||||||| ||||||   |||||||||||||| ||||||||||||||||||||||  || |||  ||| |||||||| |    
T  14834720 actaaattcaccatgattttcttaaattcataatttc--aaagtttgttatatacaaaaaagatgtatttttagttaaaaaaaccgtacgaaaagtacct 14834817  T
Q  123 acataattgtacctaaattttgtcct 148  Q
    | | |||||||| ||| |||||||||    
T  14834818 agagaattgtacttaagttttgtcct 14834843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 37114361 - 37114242
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||| |||||||||||||| | ||||||| | ||||||| |||||||||||||| ||||||||||| |||||||| |||| ||||| || ||    
T  37114361 actaaattcaccatgattttcttaaatccataattttctcaaagtttattatatccaaaaaatatgtatttttaattaagaaccatacgaaaagcaccta 37114262  T
Q  124 cataattgtacctaaatttt 143  Q
       |||||||||||| ||||    
T  37114261 aggaattgtacctaagtttt 37114242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 38520141 - 38520015
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||| |||||| || |||||| ||||||| | |||||||||||||||||||||| || ||||||||||||||||| |||| ||||| |  ||    
T  38520141 actaaattcaccatgatttcctcaaattcataattttctcaaagtttgttatatccaaaaaatatatatttttagttaagaaccatacgaaaagcaacta 38520042  T
Q  124 cataattgtacctaaattttgtccttt 150  Q
       |||| |||||||||||| ||||||    
T  38520041 aggaattatacctaaattttctccttt 38520015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 12234597 - 12234462
Alignment:
Q  18 gttattgactaaattcaccgtgattttcttaaattcgtaatttttt-aaagttt-gttatatccaaaaaagatgtatttttagttaagaactatacaaaa 115  Q
    |||||| |||||||||||  |||||| || |||||| ||||||| | ||||||| ||||||||||||||| |||||||||||||||||||| |||| |||    
T  12234597 gttattaactaaattcacgatgatttcctcaaattcataattttctcaaagttttgttatatccaaaaaatatgtatttttagttaagaaccatacgaaa 12234498  T
Q  116 agtacttacataattgtacctaaattttgtcctttt 151  Q
    || ||  | | |||| ||||||| |||| |||||||    
T  12234497 agcacccaaagaattatacctaagttttctcctttt 12234462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 15882324 - 15882197
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaag-atgtatttttagttaagaactatacaaaaagtactt 122  Q
    |||||||||||| ||||||||| |||| | |||| || | |||||| |||||||||||||||  |||||||||||||||||||| |||||||||| || |    
T  15882324 actaaattcaccatgattttctcaaatccataatattctcaaagttagttatatccaaaaaaatatgtatttttagttaagaaccatacaaaaagcacct 15882225  T
Q  123 acataattgtacctaaattttgtccttt 150  Q
    |   |||||||||||| |||| ||||||    
T  15882224 aaggaattgtacctaagttttctccttt 15882197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 40891136 - 40891054
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaac 106  Q
    |||||||||||| |||||| || |||| | ||||||| | |||||||||||||||||||||| ||||||||||||||||||||    
T  40891136 actaaattcaccatgatttcctcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaac 40891054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 29781047 - 29781100
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaag 117  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||| |||||    
T  29781047 aaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacgaaaag 29781100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 148
Target Start/End: Original strand, 17426676 - 17426802
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgta--tttttagttaagaactatacaaaaagtact 121  Q
    |||||||||||| |||||| || ||||   ||||||| | |||||||||||||||||||||| || ||  ||||||||||||||| |||| ||||| ||     
T  17426676 actaaattcaccatgatttcctcaaatctataattttctcaaagtttgttatatccaaaaaaaatatacatttttagttaagaaccatacgaaaagcacc 17426775  T
Q  122 tacataattgtacctaaattttgtcct 148  Q
    || | |||||||||||| |||| ||||    
T  17426776 taaaaaattgtacctaagttttctcct 17426802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 23940852 - 23940946
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaag-atgtatttttagttaagaactatacaaaaag 117  Q
    |||||||||||| |||||| || |||| ||||||||| | ||||||||||||||  ||||||  |||||||||||||||| ||| |||| |||||    
T  23940852 actaaattcaccatgatttcctcaaatccgtaattttctcaaagtttgttatatttaaaaaaatatgtatttttagttaaaaaccatacgaaaag 23940946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 148
Target Start/End: Complemental strand, 8210443 - 8210322
Alignment:
Q  28 aaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttacat 126  Q
    ||||||| | |||||| || |||| | ||||||| | |||||||||||||||||||||| || ||| ||||||||||||  |||| ||||| || ||       
T  8210443 aaattcatcatgatttcctcaaatccataattttctcaaagtttgttatatccaaaaaatatatatatttagttaagaatcatacgaaaagcacctaagg 8210344  T
Q  127 aattgtacctaaattttgtcct 148  Q
    |||||||||||| |||| ||||    
T  8210343 aattgtacctaagttttctcct 8210322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 10778740 - 10778687
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaag 117  Q
    ||||||||||||| ||| |||| |||||||||||||||||||| |||| |||||    
T  10778740 aaagtttgttatagccacaaaaaatgtatttttagttaagaaccatacgaaaag 10778687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 24211328 - 24211445
Alignment:
Q  27 taaattcaccgtgattttcttaaattcgtaattttttaa-agtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttaca 125  Q
    |||||||||||| |||| ||||| | | ||||||| | | ||||||||||||| |||||| |||||||| || |||||||| |||| ||||| || ||      
T  24211328 taaattcaccgtaatttccttaattccataattttctcatagtttgttatatctaaaaaatatgtatttctatttaagaaccatacgaaaagcacctaag 24211427  T
Q  126 taattgtacctaaatttt 143  Q
     |||||||||||| ||||    
T  24211428 gaattgtacctaagtttt 24211445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 33100733 - 33100812
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttacataattgtacctaaatttt 143  Q
    ||||||||||||||| |||||| |||| |||||||||||||||  ||| ||||| || ||   |||||||||||| ||||    
T  33100733 aaagtttgttatatcaaaaaaatatgtttttttagttaagaaccgtacgaaaagcacataagaaattgtacctaagtttt 33100812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 4262064 - 4262106
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaac 106  Q
    |||||||||||||| ||||||| ||||||||||| ||||||||    
T  4262064 aaagtttgttatattcaaaaaatatgtatttttaattaagaac 4262106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 5356168 - 5356253
Alignment:
Q  22 ttgactaaattcaccgtgattttcttaaattcgtaatttt--ttaaagtttgttatatccaaaaaagatgtatttttagttaagaa 105  Q
    ||||||||||||||| | |||||||||||| | | |||||  ||||||||| |||||   |||||| ||||||||||| |||||||    
T  5356168 ttgactaaattcaccataattttcttaaatccatcattttttttaaagtttattataattaaaaaatatgtatttttaattaagaa 5356253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 4035820 - 4035771
Alignment:
Q  68 tttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaag 117  Q
    |||||||||||||||||| || |||||||||||||| || |||| |||||    
T  4035820 tttgttatatccaaaaaatatatatttttagttaagtaccatacgaaaag 4035771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 40393802 - 40393765
Alignment:
Q  68 tttgttatatccaaaaaagatgtatttttagttaagaa 105  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  40393802 tttgttatatcccaaaaatatgtatttttagttaagaa 40393765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 6e-31; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 29609124 - 29609000
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    ||||||||||||||||||| ||||||| | ||||||| | |||||||||||| |||||||||||||||||||||||||||||| | || ||||| |||||    
T  29609124 actaaattcaccgtgatttccttaaatccataattttctcaaagtttgttatctccaaaaaagatgtatttttagttaagaaccacacgaaaagcactta 29609025  T
Q  124 cataattgtacctaaattttgtcct 148  Q
     | |||||||||||| |||||||||    
T  29609024 aagaattgtacctaagttttgtcct 29609000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 8091185 - 8091066
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    ||||||||||||||||||| ||||||| | ||||||| | |||||||||||||||||||||| |||||||||||||||||||| |||| ||||| || ||    
T  8091185 actaaattcaccgtgatttccttaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacgaaaagcaccta 8091086  T
Q  124 cataattgtacctaaatttt 143  Q
       ||||||| |||||||||    
T  8091085 aggaattgtatctaaatttt 8091066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 885508 - 885384
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||| | ||||||||| |||| | ||||||| | |||||||||||||||||||||| |||||||||||||||||||| |||||||||| || ||    
T  885508 actaaattcatcatgattttctcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacaaaaagcaccta 885409  T
Q  124 cataattgtacctaaattttgtcct 148  Q
       |||||||||||| |||| ||||    
T  885408 aggaattgtacctaagttttctcct 885384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 25 - 151
Target Start/End: Original strand, 21379989 - 21380116
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaattttttaaa-gtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||| |||||| || |||||| ||||||| | || ||||||||||||||||||| |||||||||||||||||||| |||| ||||| || ||    
T  21379989 actaaattcaccatgatttcctcaaattcataattttctcaatgtttgttatatccaaaaaatatgtatttttagttaagaaccatacgaaaagcaccta 21380088  T
Q  124 cataattgtacctaaattttgtcctttt 151  Q
       |||||||||||| |||| |||||||    
T  21380089 aggaattgtacctaagttttctcctttt 21380116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 13439819 - 13439692
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaag-atgtatttttagttaagaactatacaaaaagtactt 122  Q
    |||||||||||| |||||| || |||| | ||||||| | ||||||||||||||||||||||  |||||||||||| ||||||| |||| ||||||||||    
T  13439819 actaaattcaccatgatttcctcaaatccataattttctcaaagtttgttatatccaaaaaaatatgtatttttagctaagaaccatacgaaaagtactt 13439720  T
Q  123 acataattgtacctaaattttgtccttt 150  Q
    |   |||||||||||| |||| ||||||    
T  13439719 aaggaattgtacctaagttttctccttt 13439692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 25 - 119
Target Start/End: Original strand, 31764373 - 31764468
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagta 119  Q
    |||||||||||| | ||||||| |||||| ||||||| | |||||||||| ||||||||||| |||||| |||||||||||||||||| |||||||    
T  31764373 actaaattcaccattattttctcaaattcataattttctcaaagtttgttgtatccaaaaaatatgtatctttagttaagaactatacgaaaagta 31764468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 3369108 - 3369015
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaag 117  Q
    |||||||||||| |||||| || |||||| ||||||| | |||||||||||||| ||||||| |||||||||||||||||||| |||| |||||    
T  3369108 actaaattcaccatgatttcctcaaattcataattttctcaaagtttgttatattcaaaaaatatgtatttttagttaagaaccatacgaaaag 3369015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 15546753 - 15546663
Alignment:
Q  27 taaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaa 116  Q
    |||||| ||| |||||| || |||| | ||||||| | |||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  15546753 taaatttaccatgatttcctcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacaaaaa 15546663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 143
Target Start/End: Complemental strand, 4238975 - 4238856
Alignment:
Q  27 taaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagat--gtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||| ||||||||| |||| | ||||||| | |||||||||||||||||||||| ||  ||||||||| || ||||| |||||||||| || ||    
T  4238975 taaattcaccatgattttctcaaatccttaattttctcaaagtttgttatatccaaaaaaaatatgtatttttaattgagaaccatacaaaaagcacata 4238876  T
Q  124 cataattgtacctaaatttt 143  Q
     | ||||||| |||||||||    
T  4238875 aagaattgtatctaaatttt 4238856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 149
Target Start/End: Original strand, 4890528 - 4890654
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaag-atgtatttttagttaagaactatacaaaaagtactt 122  Q
    |||||||| ||| |||||| || |||||| ||||||| | ||||||||||||||||||||||  |||  ||||||||||||||| |||| ||||| || |    
T  4890528 actaaatttaccatgatttcctcaaattcataattttctcaaagtttgttatatccaaaaaaatatgcgtttttagttaagaaccatacgaaaagcacct 4890627  T
Q  123 acataattgtacctaaattttgtcctt 149  Q
    |   ||||||||||||||||| |||||    
T  4890628 aaggaattgtacctaaattttctcctt 4890654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 116
Target Start/End: Complemental strand, 20501788 - 20501737
Alignment:
Q  65 aagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaa 116  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||| ||||    
T  20501788 aagtttgttatatccaaaaaatatgtatttttagttaagaaccatacgaaaa 20501737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 11687231 - 11687284
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaag 117  Q
    ||||||||||||||| |||||| |||||||||||||||||||| |||| |||||    
T  11687231 aaagtttgttatatcaaaaaaatatgtatttttagttaagaaccatacgaaaag 11687284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 13172661 - 13172713
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaa 116  Q
    |||||||||||||||||||||| ||||||||||| |||||||| |||| ||||    
T  13172661 aaagtttgttatatccaaaaaatatgtatttttacttaagaaccatacgaaaa 13172713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 85
Target Start/End: Original strand, 34522322 - 34522369
Alignment:
Q  39 gattttcttaaattcgtaatttt-ttaaagtttgttatatccaaaaaa 85  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  34522322 gattttcttaaattcataattttcttaaagtttgttatatccaaaaaa 34522369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 7808692 - 7808654
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaa 102  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  7808692 aaagtttgttatatccaaaaaatatgtatttttagttaa 7808654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 14393687 - 14393603
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaa---aaagatgtatttttagttaagaa 105  Q
    |||||||||||| |||||| || |||| | ||||||| | |||||||||||||||||||   ||| |||||||||||||||||||    
T  14393687 actaaattcaccatgatttcctcaaatccataattttctcaaagtttgttatatccaaaaagaaatatgtatttttagttaagaa 14393603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 152
Target Start/End: Original strand, 18998164 - 18998293
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaag-atgtatttttagttaagaactatacaaaaagtactt 122  Q
    |||||||||||| |||||| ||  ||| | ||||||| | ||||||||||||||| ||||||  ||||||||||| |||||||| |||| ||||| || |    
T  18998164 actaaattcaccatgatttcctcgaatccataattttctcaaagtttgttatatcaaaaaaaatatgtatttttaattaagaaccatacgaaaagcacct 18998263  T
Q  123 acataattgtacctaaattttgtccttttg 152  Q
    |   ||||||| ||||||||| | ||||||    
T  18998264 aaggaattgtagctaaattttctacttttg 18998293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 25 - 151
Target Start/End: Complemental strand, 45957 - 45830
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||| ||||||||| |||| | ||||||| | |||||||||||||||||||||| |||||||||||||||||||| |||||||||| || ||    
T  45957 actaaattcaccatgattttctcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacaaaaagcaccta 45858  T
Q  124 cataattgtacctaaattttgtcctttt 151  Q
       |||||||||||| |||| |||||||    
T  45857 aggaattgtacctaagttttctcctttt 45830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 25 - 151
Target Start/End: Original strand, 2125118 - 2125245
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||| ||||||| |||||||  ||||||| | ||||||||||||||| |||||| ||||||||||||||||||||||||| ||||| || ||    
T  2125118 actaaattcaccatgatttttttaaatttataattttctcaaagtttgttatatcaaaaaaatatgtatttttagttaagaactatacgaaaagcaccta 2125217  T
Q  124 cataattgtacctaaattttgtcctttt 151  Q
       ||||||||||||||||| |||||||    
T  2125218 agaaattgtacctaaattttctcctttt 2125245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 25 - 149
Target Start/End: Original strand, 19954959 - 19955084
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||| |||||| || |||| | ||||||| | |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||    
T  19954959 actaaattcaccatgatttcctcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacaaaaagtaccta 19955058  T
Q  124 cataattgtacctaaattttgtcctt 149  Q
       |||||||||||| |||| |||||    
T  19955059 aggaattgtacctaagttttctcctt 19955084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 149
Target Start/End: Complemental strand, 5189592 - 5189467
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||| |||||| ||||||| | ||||||| | |||||||||||||||||||||| |||||||||||||||||||| |||| ||||| || ||    
T  5189592 actaaattcaccatgatttccttaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacgaaaagcaccta 5189493  T
Q  124 cataattgtacctaaattttgtcctt 149  Q
       |||||||||||| |||| |||||    
T  5189492 aggaattgtacctaagttttctcctt 5189467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 64 - 151
Target Start/End: Original strand, 42561383 - 42561470
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttacataattgtacctaaattttgtcctttt 151  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||| || ||   |||||||||||| |||| |||||||    
T  42561383 aaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacaaaaagcacctaaggaattgtacctaagttttctcctttt 42561470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 149
Target Start/End: Original strand, 3607777 - 3607902
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||| | |||||| || |||| | ||||||| | |||||||||||||||||||||| |||||||||||||||||||| |||| ||||| || ||    
T  3607777 actaaattcatcatgatttcctcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacgaaaagcaccta 3607876  T
Q  124 cataattgtacctaaattttgtcctt 149  Q
       |||||||||||| |||| |||||    
T  3607877 agaaattgtacctaagttttctcctt 3607902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 149
Target Start/End: Original strand, 27240972 - 27241097
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||| ||||||||| |||| | ||||||| | |||||||||||||||||||||| || ||||||||||||||||| ||||  |||| || ||    
T  27240972 actaaattcaccatgattttctcaaatccataattttctcaaagtttgttatatccaaaaaatatatatttttagttaagaaccatacgcaaagcaccta 27241071  T
Q  124 cataattgtacctaaattttgtcctt 149  Q
       |||||||||||| |||| |||||    
T  27241072 acgaattgtacctaagttttctcctt 27241097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 148
Target Start/End: Original strand, 2854580 - 2854704
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||  |||||| || |||||| ||||||| | |||||||||||||||||||||| || ||||||||||||||||| |||| ||||| || ||    
T  2854580 actaaattcactatgatttcctcaaattcataattttctcaaagtttgttatatccaaaaaatatatatttttagttaagaaccatacgaaaaggaccta 2854679  T
Q  124 cataattgtacctaaattttgtcct 148  Q
       |||||||||||| |||| ||||    
T  2854680 aggaattgtacctaagttttctcct 2854704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 9895336 - 9895252
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttacataattgtacctaaattttgtcct 148  Q
    ||||||||||||||| |||||| |||||||||||||||||||| |||| |||||||| || | |||| |||||||||||| ||||    
T  9895336 aaagtttgttatatcaaaaaaatatgtatttttagttaagaaccatacgaaaagtacctaaaaaattatacctaaattttctcct 9895252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 148
Target Start/End: Original strand, 48954262 - 48954386
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||  |||||| || |||||| ||||||| | |||||||||||||||||||||| || ||||||||||||||||| |||| ||||| || ||    
T  48954262 actaaattcactatgatttcctcaaattcataattttctcaaagtttgttatatccaaaaaatatatatttttagttaagaaccatacgaaaaggaccta 48954361  T
Q  124 cataattgtacctaaattttgtcct 148  Q
       |||||||||||| |||| ||||    
T  48954362 aggaattgtacctaagttttctcct 48954386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 148
Target Start/End: Original strand, 19797042 - 19797153
Alignment:
Q  38 tgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttacataattgtacct 136  Q
    |||||| || |||| | ||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||| ||||| || ||   ||||||||||    
T  19797042 tgatttcctcaaatccataattttttcaaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacgaaaagcacctaaggaattgtacct 19797141  T
Q  137 aaattttgtcct 148  Q
    || |||| ||||    
T  19797142 aagttttctcct 19797153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 23698550 - 23698669
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||  |||||| || |||||| ||||||| | |||||||||||||||||||||| || ||||||||||||||||| |||| ||||| || ||    
T  23698550 actaaattcactatgatttcctcaaattcataattttctcaaagtttgttatatccaaaaaatatatatttttagttaagaaccatacgaaaaggaccta 23698649  T
Q  124 cataattgtacctaaatttt 143  Q
       |||||||||||| ||||    
T  23698650 aggaattgtacctaagtttt 23698669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 50162588 - 50162706
Alignment:
Q  27 taaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaag-atgtatttttagttaagaactatacaaaaagtacttac 124  Q
    |||||||||||||||||||| ||||   ||||||| | ||||||||||||||||||||||  ||||| |||||||||||||| |||||||||| || ||     
T  50162588 taaattcaccgtgattttctcaaatctataattttctcaaagtttgttatatccaaaaaaatatgtaattttagttaagaaccatacaaaaagcacctaa 50162687  T
Q  125 ataattgtacctaaatttt 143  Q
      |||||||||||| ||||    
T  50162688 ggaattgtacctaagtttt 50162706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 28244066 - 28243953
Alignment:
Q  40 attttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaacta-----tacaaaaagtacttacataattgta 133  Q
    |||| ||||||| | ||||||| | ||||||||||||||||||||||||||||||||||||||||||| |     ||||||||| || || | |||||||    
T  28244066 atttccttaaatccataattttctcaaagtttgttatatccaaaaaagatgtatttttagttaagaaccaaaccatacaaaaagcacatagagaattgta 28243967  T
Q  134 cctaaattttgtcc 147  Q
    ||||| ||||||||    
T  28243966 cctaagttttgtcc 28243953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 14387063 - 14387155
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaa 116  Q
    |||||||||||| |||||| || |||| | ||||||| | ||||||| |||||||||||||| |||||||||||||||||||| |||| ||||    
T  14387063 actaaattcaccatgatttcctcaaatccataattttctcaaagtttattatatccaaaaaatatgtatttttagttaagaaccatacgaaaa 14387155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 15324750 - 15324623
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaag-atgtatttttagttaagaactatacaaaaagtactt 122  Q
    |||||||||||  |||||| || |||| | ||||||| | ||||||||||||||||||||||  |||||||||||||||||||| |||| ||||| || |    
T  15324750 actaaattcactatgatttcctcaaatccataattttctcaaagtttgttatatccaaaaaaatatgtatttttagttaagaaccatacgaaaagcacct 15324651  T
Q  123 acataattgtacctaaattttgtccttt 150  Q
    |   |||||||||||| |||| ||||||    
T  15324650 aagaaattgtacctaagttttctccttt 15324623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 6079507 - 6079425
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaac 106  Q
    |||||||||||| |||||| || |||| | ||||||| | |||||||||||||||||||||| ||||||||||||| ||||||    
T  6079507 actaaattcaccatgatttcctcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagtgaagaac 6079425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 49284342 - 49284403
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaa 85  Q
    |||||||||||| |||||||||||||| | ||||||||| ||||||||||||||||||||||    
T  49284342 actaaattcaccatgattttcttaaatccataattttttcaaagtttgttatatccaaaaaa 49284403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 50627214 - 50627161
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaag 117  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||| |||||    
T  50627214 aaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacgaaaag 50627161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 117
Target Start/End: Complemental strand, 1387888 - 1387808
Alignment:
Q  38 tgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaag 117  Q
    |||||| || |||||| ||||||| | ||||||| |||||||||||||| |||||||||||||||||||| |||| |||||    
T  1387888 tgatttcctcaaattcataattttctcaaagtttattatatccaaaaaatatgtatttttagttaagaaccatacgaaaag 1387808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 9978099 - 9978219
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaag-atgtatttttagttaagaactatacaaaaagtactt 122  Q
    |||||||||||  |||||| || |||| | ||||||| | ||||||||||||||||||||||  |||||||||||||||||||| |||| ||||| || |    
T  9978099 actaaattcactatgatttcctcaaatccataattttctcaaagtttgttatatccaaaaaaatatgtatttttagttaagaaccatacgaaaagcacct 9978198  T
Q  123 acataattgtacctaaatttt 143  Q
    |   |||||||||||| ||||    
T  9978199 aaggaattgtacctaagtttt 9978219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 16755314 - 16755262
Alignment:
Q  58 ttttttaaagtttgttatatccaaaaaagatgtatttttagttaagaactata 110  Q
    ||||| |||||||||||||||||||| | ||||||||||||||||||||||||    
T  16755314 tttttcaaagtttgttatatccaaaacatatgtatttttagttaagaactata 16755262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 27670266 - 27670175
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaa 115  Q
    |||||||||| | |||||| ||||||| | ||||||| | ||||||| |||||| ||||||| |||||||||||||||||||  ||||||||    
T  27670266 actaaattcatcatgatttccttaaatccataattttctcaaagttttttatattcaaaaaatatgtatttttagttaagaatcatacaaaa 27670175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 47940618 - 47940745
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaag-atgtatttttagttaagaactatacaaaaagtactt 122  Q
    |||||||||||| |||||| ||  ||| | ||||||| | ||||||||||||||||||||||  |||||||||||||||||||| |||| ||||  || |    
T  47940618 actaaattcaccatgatttcctcgaatccataattttctcaaagtttgttatatccaaaaaaatatgtatttttagttaagaaccatacgaaaaacacct 47940717  T
Q  123 acataattgtacctaaattttgtccttt 150  Q
    |   |||||||||||| |||| ||||||    
T  47940718 aaggaattgtacctaagttttctccttt 47940745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 21930483 - 21930411
Alignment:
Q  46 ttaaattcgtaatttt-ttaaagtttgttatatccaaaaaag-atgtatttttagttaagaactatacaaaaa 116  Q
    |||||| | ||||||| ||||||||||||||||||||||||  |||||||||||||||||||| |||| ||||    
T  21930483 ttaaatccataattttcttaaagtttgttatatccaaaaaaatatgtatttttagttaagaaccatacgaaaa 21930411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 73 - 149
Target Start/End: Complemental strand, 36880363 - 36880287
Alignment:
Q  73 tatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttacataattgtacctaaattttgtcctt 149  Q
    ||||||||||||| ||||||||||||||| |||| |||| ||||  ||||| | |||||||||||| |||| |||||    
T  36880363 tatatccaaaaaatatgtatttttagttaggaaccatacgaaaaacacttaaaaaattgtacctaagttttctcctt 36880287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 42010450 - 42010540
Alignment:
Q  27 taaattcaccgtgattttcttaaattcgtaattttt-taaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaag 117  Q
    |||||| ||| ||||||||||||| || ||||||||  |||||||||||||| ||||||| | |||| |||||||||||| | |||||||||    
T  42010450 taaatttaccatgattttcttaaaatcataatttttcgaaagtttgttatattcaaaaaa-aagtatatttagttaagaattgtacaaaaag 42010540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 957712 - 957630
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttt-ttaaagtttgttatatc-caaaaaagatgtatttttagttaagaa 105  Q
    |||||||||||| ||||||||| |||| | ||||||| | |||||||||||||||  |||||| ||||| |||||||||||||    
T  957712 actaaattcaccatgattttctcaaatccataattttctcaaagtttgttatatcaaaaaaaatatgtaattttagttaagaa 957630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 35547748 - 35547870
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttta-aagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||| ||||| | ||||  |||||| | ||||||| || ||||||| ||||||||||||| ||||||||||| || ||||  |||| ||||| | |||    
T  35547748 actaaaatcaccataatttctttaaatccataattttctataagtttgatatatccaaaaaaaatgtatttttaatttagaatgatacgaaaagcattta 35547847  T
Q  124 cataattgtacctaaattttgtc 146  Q
     | |||||||| |||||||||||    
T  35547848 aagaattgtacataaattttgtc 35547870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 48645102 - 48645144
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaac 106  Q
    ||||||||||||||| |||||| ||||||||||||||||||||    
T  48645102 aaagtttgttatatctaaaaaatatgtatttttagttaagaac 48645144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 4299440 - 4299535
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaaga---tgtatttttagttaagaactatacaaaaa 116  Q
    |||||||||||| | |||| || |||| | ||||||| | |||||||||||||||||||||| |   ||||||||||||||||||| |||| ||||    
T  4299440 actaaattcaccattatttcctcaaatccataattttctcaaagtttgttatatccaaaaaaaaatatgtatttttagttaagaaccatacgaaaa 4299535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 27928385 - 27928438
Alignment:
Q  64 aaagtttgttatatccaaaaaag-atgtatttttagttaagaactatacaaaaa 116  Q
    ||||||||||||||||||||||  |||||||||||||||||||| |||| ||||    
T  27928385 aaagtttgttatatccaaaaaaatatgtatttttagttaagaaccatacgaaaa 27928438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 111
Target Start/End: Complemental strand, 2302523 - 2302439
Alignment:
Q  28 aaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatac 111  Q
    ||||||||| |||||| || |||||| ||||||| | |||||| | || |||||| ||||||||| |||||||||||||| ||||    
T  2302523 aaattcaccatgatttcctcaaattcataattttctcaaagttcgctacatccaagaaagatgtaattttagttaagaaccatac 2302439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 27926338 - 27926393
Alignment:
Q  64 aaagtttgttatatccaaaaaagat--gtatttttagttaagaactatacaaaaag 117  Q
    |||||||||||||||||||||| ||  |||||||||||||||||| |||| |||||    
T  27926338 aaagtttgttatatccaaaaaaaatatgtatttttagttaagaaccatacgaaaag 27926393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 29598446 - 29598370
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagtt 100  Q
    |||||||||||  |||||| ||||||| | ||||||| | ||||||||||||||  |||||| ||||||||||||||    
T  29598446 actaaattcactatgatttccttaaatccataattttctcaaagtttgttatattaaaaaaatatgtatttttagtt 29598370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 5683687 - 5683742
Alignment:
Q  42 tttcttaaattcgtaattttttaaagtttgttatatccaaaaaagatgtattttta 97  Q
    |||||||||| | |||||||||||||||||||||| | ||||| ||| ||||||||    
T  5683687 tttcttaaatccataattttttaaagtttgttataactaaaaatgatatattttta 5683742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 51789645 - 51789769
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||| |||||| || || | | ||||||| | ||||| ||||||||| ||||||  ||| ||||||||||||||| |||| ||||| | |||    
T  51789645 actaaattcaccatgatttcctcaattccataattttctcaaagtatgttatatctaaaaaa--tgtgtttttagttaagaaccatacgaaaagcattta 51789742  T
Q  124 cataattgtacctaaattttgtccttt 150  Q
       |||||||||||| |||| ||||||    
T  51789743 aggaattgtacctaagttttctccttt 51789769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 26208508 - 26208454
Alignment:
Q  64 aaagtttgttatatccaaaaaag-atgtatttttagttaagaactatacaaaaag 117  Q
    ||||||||||||||||||||||  |||||||||||||| ||||| |||| |||||    
T  26208508 aaagtttgttatatccaaaaaaatatgtatttttagttgagaaccatacgaaaag 26208454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 150
Target Start/End: Original strand, 28447961 - 28448047
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttacataattgtacctaaattttgtccttt 150  Q
    ||||||||||||||  ||||||||| |||||||||||| |||||| || ||||  |  || | |||||||||||| |||| ||||||    
T  28447961 aaagtttgttatattaaaaaaagatatatttttagttatgaactaaacgaaaaacatataaagaattgtacctaagttttatccttt 28448047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 28431784 - 28431844
Alignment:
Q  58 ttttttaaagtttgttatatccaaa--aaagatgtatttttagttaagaactatacaaaaa 116  Q
    ||||||||| ||| |||||||||||  |||| | ||||||||||||| |||||||||||||    
T  28431784 ttttttaaaatttattatatccaaacaaaaggtatatttttagttaaaaactatacaaaaa 28431844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 40647241 - 40647157
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagat--gtatttttagttaagaac 106  Q
    |||||||||||| |||||| || |||| | ||||||| | ||||||||||||||  |||||| ||  ||||||||||||||||||    
T  40647241 actaaattcaccatgatttcctcaaatccataattttctcaaagtttgttatataaaaaaaaaatatgtatttttagttaagaac 40647157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 22339072 - 22339152
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttacataattgtacctaaattttg 144  Q
    ||||| |||| ||||||| |||| ||||||||||||||||||| |||  ||||| || || | ||||| |||||| |||||    
T  22339072 aaagtctgttctatccaacaaaggtgtatttttagttaagaaccatatgaaaagcacctaaagaattgcacctaagttttg 22339152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 151
Target Start/End: Original strand, 49285086 - 49285150
Alignment:
Q  87 atgtatttttagttaagaactatacaaaaagtacttacataattgtacctaaattttgtcctttt 151  Q
    |||||||||||||||||||| |||| ||||| || ||   |||||||||||| |||| |||||||    
T  49285086 atgtatttttagttaagaaccatacgaaaagcacctaaggaattgtacctaagttttctcctttt 49285150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0653 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0653
Description:

Target: scaffold0653; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 3443 - 3568
Alignment:
Q  27 taaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttaca 125  Q
    |||||||||| |||||| || |||||  ||||||| | |||||||||||||||||||||| ||||||||||| |||||||| |||| |||||||| || |    
T  3443 taaattcaccatgatttcctcaaatttataattttatcaaagtttgttatatccaaaaaatatgtatttttatttaagaaccatacgaaaagtacctaaa 3542  T
Q  126 taattgtacctaaattttgtcctttt 151  Q
     ||||||||||||||||| |||||||    
T  3543 gaattgtacctaaattttctcctttt 3568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 9e-27; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 9285764 - 9285889
Alignment:
Q  27 taaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttaca 125  Q
    |||||||||| |||||| || |||||  ||||||| | |||||||||||||||||||||| ||||||||||| |||||||| |||| |||||||| || |    
T  9285764 taaattcaccatgatttcctcaaatttataattttatcaaagtttgttatatccaaaaaatatgtatttttatttaagaaccatacgaaaagtacctaaa 9285863  T
Q  126 taattgtacctaaattttgtcctttt 151  Q
     ||||||||||||||||| |||||||    
T  9285864 gaattgtacctaaattttctcctttt 9285889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 9289831 - 9289956
Alignment:
Q  27 taaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttaca 125  Q
    |||||||||| |||||| || |||||  ||||||| | |||||||||||||||||||||| ||||||||||| |||||||| |||| |||||||| || |    
T  9289831 taaattcaccatgatttcctcaaatttataattttatcaaagtttgttatatccaaaaaatatgtatttttatttaagaaccatacgaaaagtacctaaa 9289930  T
Q  126 taattgtacctaaattttgtcctttt 151  Q
     ||||||||||||||||| |||||||    
T  9289931 gaattgtacctaaattttctcctttt 9289956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 30259114 - 30259207
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaag 117  Q
    |||||||||||| ||||||||| |||| | ||||||| | |||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  30259114 actaaattcaccatgattttctcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacaaaaag 30259207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 3953090 - 3953209
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||| |||||| || |||| | |||||||   |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||    
T  3953090 actaaattcaccatgatttcctcaaatccataattttcacaaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacaaaaagtaccta 3953189  T
Q  124 cataattgtacctaaatttt 143  Q
      |||||||| |||| ||||    
T  3953190 agtaattgtatctaagtttt 3953209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 30594816 - 30594690
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||| |||||| || |||| | ||||||| | |||||||||||||||||||||| ||||||||||||||||||||||| | ||||| || ||    
T  30594816 actaaattcaccatgatttcctcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaactatgcgaaaagcaccta 30594717  T
Q  124 cataattgtacctaaattttgtccttt 150  Q
       |||||||||||| |||| ||||||    
T  30594716 aggaattgtacctaagttttctccttt 30594690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 117
Target Start/End: Complemental strand, 34052401 - 34052309
Alignment:
Q  26 ctaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaag 117  Q
    ||||||||||| |||||| || |||||| ||||||| | |||||||||||||||||||||| |||||||||||||||||||| |||| |||||    
T  34052401 ctaaattcaccatgatttcctcaaattcataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacgaaaag 34052309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 24836143 - 24836017
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||| |||||| || |||| | ||||||| | |||||||||||||||||||||| |||||||||||||| ||||| |||| ||||| || ||    
T  24836143 actaaattcaccatgatttcctcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttnagaaccatacgaaaagcaccta 24836044  T
Q  124 cataattgtacctaaattttgtccttt 150  Q
       |||||||||||| |||| ||||||    
T  24836043 agcaattgtacctaagttttctccttt 24836017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 149
Target Start/End: Original strand, 16876506 - 16876629
Alignment:
Q  27 taaattcaccgtgattttcttaaattcgtaatttt-ttaaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttaca 125  Q
    |||||| ||| ||||||||| |||| ||||||||| ||| ||||||||||||||| ||| ||| |||||||||| || ||| ||| |||||||| ||| |    
T  16876506 taaatttaccatgattttctcaaatccgtaattttcttagagtttgttatatccataaaggatatatttttagtcaaaaaccatataaaaagtagttaaa 16876605  T
Q  126 taattgtacctaaattttgtcctt 149  Q
     ||||||||| || ||||||||||    
T  16876606 aaattgtacccaagttttgtcctt 16876629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 29277960 - 29277842
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||| |||||| ||||||| |  |||||| | ||| |||||| ||||||||| || ||||||||||||||||||| ||||||||||||| ||    
T  29277960 actaaattcaccatgatttccttaaatccaaaattttctcaaactttgttgtatccaaaacag-tgtatttttagttaagaaccatacaaaaagtaccta 29277862  T
Q  124 cataattgtacctaaatttt 143  Q
     | |||||||||||| ||||    
T  29277861 aagaattgtacctaagtttt 29277842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 25 - 151
Target Start/End: Original strand, 31231662 - 31231791
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatat--ccaaaaaagatgtatttttagttaagaactatacaaaaagtact 121  Q
    |||||||||||| |||||| || |||| | ||||||| | ||||||||||||||  |||||||| |||||||||||||||||||| |||| ||||| ||     
T  31231662 actaaattcaccatgatttcctcaaatccataattttctcaaagtttgttatatgtccaaaaaatatgtatttttagttaagaaccatacgaaaagcacc 31231761  T
Q  122 tacataattgtacctaaattttgtcctttt 151  Q
    ||   |||||||||||| |||| |||||||    
T  31231762 taaggaattgtacctaagttttctcctttt 31231791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 37093891 - 37093765
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||| |||||| || |||||  ||||||| | |||||||||||||||||||||| || |||||||| |||||||  |||| |||| ||| ||    
T  37093891 actaaattcaccatgatttcctcaaatttataattttctcaaagtttgttatatccaaaaaatatatatttttaattaagaatcatacgaaaaataccta 37093792  T
Q  124 cataattgtacctaaattttgtccttt 150  Q
       ||||||||||||||||| ||||||    
T  37093791 agaaattgtacctaaattttctccttt 37093765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 55 - 148
Target Start/End: Original strand, 40596764 - 40596857
Alignment:
Q  55 taattttttaaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttacataattgtacctaaattttgtcct 148  Q
    |||||||| ||||||||||||| | ||||||| ||||||||||||||||||| |||||||||  || || | || ||| |||||||||||||||    
T  40596764 taatttttcaaagtttgttataacaaaaaaagttgtatttttagttaagaaccatacaaaaaacacctaaagaaatgtgcctaaattttgtcct 40596857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 40358238 - 40358146
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaa 116  Q
    |||||||||||| |||||| || |||||| ||||||| | ||||||||||||||| |||||| ||| |||||||||||||||| |||| ||||    
T  40358238 actaaattcaccatgatttcctcaaattcataattttctcaaagtttgttatatcaaaaaaatatgcatttttagttaagaaccatacgaaaa 40358146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 35339366 - 35339445
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttacataattgtacctaaatttt 143  Q
    |||||||||||||||||||||| ||||||||||| |||||||| |||| |||||||| ||   |||||||||||| ||||    
T  35339366 aaagtttgttatatccaaaaaatatgtatttttatttaagaaccatacgaaaagtacataaggaattgtacctaagtttt 35339445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 45997556 - 45997643
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatac 111  Q
    |||||||||||| |||||| || |||| | ||||||| | ||||||| |||||||||||||| |||||||||||||||||||| ||||    
T  45997556 actaaattcaccatgatttcctcaaatccataattttctcaaagtttattatatccaaaaaatatgtatttttagttaagaaccatac 45997643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 31521573 - 31521655
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaac 106  Q
    |||||||| ||| ||||||||| |||||| ||||||||| ||||||| |||||||||||||| ||  ||||||||||||||||    
T  31521573 actaaatttaccatgattttctcaaattcataattttttcaaagtttattatatccaaaaaatattcatttttagttaagaac 31521655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 38883304 - 38883251
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaag 117  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||| |||||    
T  38883304 aaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacgaaaag 38883251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 10936558 - 10936642
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttacataattgtacctaaattttgtcct 148  Q
    ||||||||||||| |||||||| |||||||||||||||||||| |||| ||||| || ||   |||||||||||| |||| ||||    
T  10936558 aaagtttgttataaccaaaaaatatgtatttttagttaagaaccatacgaaaagcacctaaggaattgtacctaagttttctcct 10936642  T

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Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 20184286 - 20184413
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatcc-aaaaaagatgtatttttagttaagaactatacaaaaagtactt 122  Q
    |||||||||||| |||||| || |||| | ||||||| | |||||||||||||||| |||||| |||||||||||||||||||  |||| ||||| |  |    
T  20184286 actaaattcaccatgatttcctcaaatccataattttctcaaagtttgttatatccaaaaaaatatgtatttttagttaagaatcatacgaaaagcagct 20184385  T
Q  123 acataattgtacctaaattttgtccttt 150  Q
    |   |||||||||||| |||| ||||||    
T  20184386 aaggaattgtacctaagttttctccttt 20184413  T

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Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 25742519 - 25742578
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||||||||||||| |||||||||||||||| ||| |||| ||||| |||||    
T  25742519 aaagtttgttatatccaaaaaatatgtatttttagttaacaaccatacgaaaagcactta 25742578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 35665704 - 35665783
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttacataattgtacctaaatttt 143  Q
    |||||||||||||||||||||| |||||||||||||||| ||| |||| ||||| || ||   |||||||||||| ||||    
T  35665704 aaagtttgttatatccaaaaaatatgtatttttagttaaaaaccatacgaaaagcacctaaggaattgtacctaagtttt 35665783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 39617889 - 39618000
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaag-atgtatttttagttaagaactatacaaaaagtactt 122  Q
    |||||||||||| |||||| ||  ||| | ||||||| | ||||||||||||||||||||||  || |||||||||||||||||||||| ||||| || |    
T  39617889 actaaattcaccatgatttcctccaatccataattttctcaaagtttgttatatccaaaaaaatatttatttttagttaagaactatacgaaaagcacct 39617988  T
Q  123 acataattgtac 134  Q
    | | ||||||||    
T  39617989 aaagaattgtac 39618000  T

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Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 64 - 150
Target Start/End: Complemental strand, 48103451 - 48103365
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttacataattgtacctaaattttgtccttt 150  Q
    |||||||||||||||||||||| |||||||||||||||||||  |||| ||||  || ||   |||||||||||| |||| ||||||    
T  48103451 aaagtttgttatatccaaaaaatatgtatttttagttaagaatcatacgaaaaacacctaagaaattgtacctaagttttctccttt 48103365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 12142316 - 12142228
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttt-ttaaagtttgttatatccaaaaa-agatgtatttttagttaagaactatac 111  Q
    |||||||||||| ||||||||| |||| | ||||||| | |||| |||||||||||||||| | || ||||||||||||||||| ||||    
T  12142316 actaaattcaccatgattttctcaaatccataattttctcaaagattgttatatccaaaaatatatatatttttagttaagaaccatac 12142228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 7955062 - 7955011
Alignment:
Q  66 agtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaag 117  Q
    ||||| ||||||  |||||| |||||||||||||||||||| ||||||||||    
T  7955062 agttttttatataaaaaaaaaatgtatttttagttaagaaccatacaaaaag 7955011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 22723281 - 22723348
Alignment:
Q  30 attcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtattttt 96  Q
    ||||| |||||||| ||||||||  ||||||| | |||||||||||||  ||||||||||||||||||    
T  22723281 attcatcgtgatttccttaaatttttaattttctcaaagtttgttatactcaaaaaagatgtattttt 22723348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 143
Target Start/End: Complemental strand, 38528457 - 38528394
Alignment:
Q  80 aaaaaagatgtatttttagttaagaactatacaaaaagtacttacataattgtacctaaatttt 143  Q
    |||||| |||||||||||||||||||| |||||||||| | |||   |||||||||||| ||||    
T  38528457 aaaaaatatgtatttttagttaagaaccatacaaaaagcatttaaggaattgtacctaactttt 38528394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 24123813 - 24123759
Alignment:
Q  89 gtatttttagttaagaactatacaaaaagtacttacataattgtacctaaatttt 143  Q
    ||||||||||||| |||| ||||||||||||| ||   |||||||||||||||||    
T  24123813 gtatttttagttaggaaccatacaaaaagtacataaggaattgtacctaaatttt 24123759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 28723615 - 28723565
Alignment:
Q  58 ttttttaaagtttgttatatccaaaaaagatgtatttttagttaagaacta 108  Q
    ||||| ||||||| ||||||||| ||||  |||||||||||||||||||||    
T  28723615 tttttcaaagtttattatatccataaaatgtgtatttttagttaagaacta 28723565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 33749767 - 33749685
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatg-tatttttagttaagaa 105  Q
    |||||||||| | |||||| ||||||||| ||||||| | ||||||| ||||||| |||||  ||| ||||||||||||||||    
T  33749767 actaaattcatcatgatttccttaaattcataattttctcaaagtttattatatctaaaaataatgatatttttagttaagaa 33749685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 38528516 - 38528586
Alignment:
Q  80 aaaaaagatgtatttttagttaagaactatacaaaaagtacttacataattgtacctaaattttgtccttt 150  Q
    |||||| |||||||||||||||||||| |||| ||||| || ||   |||||||||||| |||| ||||||    
T  38528516 aaaaaatatgtatttttagttaagaaccatacgaaaagcacctaaggaattgtacctaagttttctccttt 38528586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 24123843 - 24123899
Alignment:
Q  64 aaagtttgttatatccaaaaaagat--gtatttttagttaagaactatacaaaaagt 118  Q
    |||||||||||||||||||||| ||  ||||||||| |||||||| |||| ||||||    
T  24123843 aaagtttgttatatccaaaaaaaatatgtatttttaattaagaaccatacgaaaagt 24123899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 25 - 149
Target Start/End: Complemental strand, 1299035 - 1298910
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||| ||||||||| |||| | ||||||| | |||||||||||||||||||||| |||||||||||||||||||| |||||||||| || ||    
T  1299035 actaaattcaccatgattttctcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacaaaaagcaccta 1298936  T
Q  124 cataattgtacctaaattttgtcctt 149  Q
       |||||||||||| |||| |||||    
T  1298935 aggaattgtacctaagttttctcctt 1298910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 13204500 - 13204376
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||| |||||| || |||| | |||||||   |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||    
T  13204500 actaaattcaccatgatttcctcaaatccataattttcacaaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacaaaaagtaccta 13204401  T
Q  124 cataattgtacctaaattttgtcct 148  Q
      |||||||| |||| |||| ||||    
T  13204400 agtaattgtatctaagttttctcct 13204376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 27434733 - 27434609
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||| ||| | |||| || |||||| ||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||    
T  27434733 actaaatttaccataatttcctcaaattcataattttctcaaagtttgttatatccaaaaaaaatgtatttttagttaagaactatacaaaaagcacata 27434634  T
Q  124 cataattgtacctaaattttgtcct 148  Q
       |||||||||||| |||| ||||    
T  27434633 agaaattgtacctaagttttctcct 27434609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 4895095 - 4895003
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaa 116  Q
    |||||||| ||| |||||| || |||||| ||||||| | |||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  4895095 actaaatttaccatgatttcctcaaattcataattttctcaaagtttgttatattcaaaaaatatgtatttttagttaagaactatacaaaaa 4895003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 20435188 - 20435314
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttta-aagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||| | |||||| || |||| | ||||||| |  ||||||||||||||||||||| |||||||||||||||||||| |||| ||||| || ||    
T  20435188 actaaattcatcatgatttcctcaaatccataattttctcgaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacgaaaagcaccta 20435287  T
Q  124 cataattgtacctaaattttgtccttt 150  Q
     | |||||||||||| |||| ||||||    
T  20435288 aagaattgtacctaagttttctccttt 20435314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 24969589 - 24969711
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaaga---tgtatttttagttaagaactatacaaaaagtac 120  Q
    |||||||||||| |||||| || |||||| ||||||| | |||||||||||||||||||||| |   |||||||||||||||||||||||| ||||| ||    
T  24969589 actaaattcaccatgatttcctcaaattcataattttctcaaagtttgttatatccaaaaaaaaaaatgtatttttagttaagaactatacgaaaagcac 24969688  T
Q  121 ttacataattgtacctaaatttt 143  Q
     ||   |||||||||||| ||||    
T  24969689 ctaaggaattgtacctaagtttt 24969711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 35360799 - 35360707
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaa 116  Q
    |||||||||||| |||||| ||||||| | ||||||| | ||||||||||||||| |||||| |||||||||||||||||||| |||| ||||    
T  35360799 actaaattcaccatgatttccttaaatccataattttctcaaagtttgttatatctaaaaaatatgtatttttagttaagaaccatacgaaaa 35360707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 530717 - 530836
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||| | |||| || |||| | ||||||| | |||||||||||||||||||||| |||||||||||||||||||| |||| ||||| || ||    
T  530717 actaaattcaccatcatttcctcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacgaaaagcaccta 530816  T
Q  124 cataattgtacctaaatttt 143  Q
       |||||||||||| ||||    
T  530817 aggaattgtacctaagtttt 530836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 143
Target Start/End: Complemental strand, 18417778 - 18417661
Alignment:
Q  27 taaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttaca 125  Q
    |||||||||| |||||| || |||| | ||||||| | |||||||||||||||||||||| || ||||||||||||||||| |||| ||||| || ||      
T  18417778 taaattcaccatgatttcctcaaatccataattttctcaaagtttgttatatccaaaaaatatatatttttagttaagaaccatacgaaaagcacctaag 18417679  T
Q  126 taattgtacctaaatttt 143  Q
     |||||||||||| ||||    
T  18417678 gaattgtacctaagtttt 18417661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 149
Target Start/End: Original strand, 47465033 - 47465157
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttt-ttaaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||| |||||||| ||||||||| ||||||| |||||||||||||| || ||| ||||| ||||||||||||| ||  |||  ||||| || ||    
T  47465033 actaaattcatcgtgattt-cttaaattcataatttttttaaagtttgttatctctaaacaagatatatttttagttaaaaatcatatgaaaagcaccta 47465131  T
Q  124 cataattgtacctaaattttgtcctt 149  Q
     | |||||||||||| ||||||||||    
T  47465132 aagaattgtacctaagttttgtcctt 47465157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 147
Target Start/End: Complemental strand, 2272488 - 2272367
Alignment:
Q  26 ctaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttac 124  Q
    ||||||||||| |||||| ||||||| | ||||||| | |||||||||| |||||||||||  |||||||| |||||||||| ||| |||||| || ||     
T  2272488 ctaaattcaccatgatttccttaaatccataattttatcaaagtttgttctatccaaaaaaattgtatttt-agttaagaaccatataaaaagcacctaa 2272390  T
Q  125 ataattgtacctaaattttgtcc 147  Q
    | ||||||| |||| ||||||||    
T  2272389 aaaattgtaactaagttttgtcc 2272367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 4552908 - 4552782
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||| | |||||| || |||| | ||||||| | |||||||||||||||||||||| || ||||||||||||| ||| |||  ||||| |||||    
T  4552908 actaaattcatcatgatttcctcaaatccataattttctcaaagtttgttatatccaaaaaatatttatttttagttaaaaaccatatgaaaagcactta 4552809  T
Q  124 cataattgtacctaaattttgtccttt 150  Q
       |||||||||||| |||| ||||||    
T  4552808 aggaattgtacctaagttttctccttt 4552782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 149
Target Start/End: Original strand, 24915842 - 24915971
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaa-----aagatgtatttttagttaagaactatacaaaaagt 118  Q
    |||||||||||| ||||||||| |||| | ||||||| | ||||||||||||||||||||     || |||||||||||||||||||| || ||||||||    
T  24915842 actaaattcaccatgattttctcaaatccataattttctcaaagtttgttatatccaaaaaaaataatatgtatttttagttaagaaccat-caaaaagt 24915940  T
Q  119 acttacataattgtacctaaattttgtcctt 149  Q
    || ||   |||||||||||| |||| |||||    
T  24915941 acataagaaattgtacctaagttttctcctt 24915971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 24294590 - 24294509
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaa 105  Q
    |||||||||||| | |||| || |||||||||||||| | ||||||||||||||| |||||| ||||||||||| |||||||    
T  24294590 actaaattcaccataatttcctcaaattcgtaattttctcaaagtttgttatatcaaaaaaatatgtatttttaattaagaa 24294509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 28809901 - 28809988
Alignment:
Q  31 ttcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaag 117  Q
    |||||| ||||||||| |||| | ||||||| | ||| |||||||||||||||||| |||||||| ||||||||||| |||| |||||    
T  28809901 ttcaccatgattttctcaaatccataattttctcaaaatttgttatatccaaaaaatatgtatttctagttaagaaccataccaaaag 28809988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 55107647 - 55107528
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||| ||| |||||| || |||| | ||||||| | ||||||||||||||||||| || |||||||||||||||||||| |||  ||||| || ||    
T  55107647 actaaatttaccatgatttcctcaaatgcataattttctcaaagtttgttatatccaaataatatgtatttttagttaagaaccatatgaaaagcacata 55107548  T
Q  124 cataattgtacctaaatttt 143  Q
       |||||||||||| ||||    
T  55107547 aggaattgtacctaagtttt 55107528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 66 - 148
Target Start/End: Original strand, 16995644 - 16995726
Alignment:
Q  66 agtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttacataattgtacctaaattttgtcct 148  Q
    ||||||||||||| |||||||||||||| |||||||| ||| |||| ||||  ||||| | ||||||| |||| |||||||||    
T  16995644 agtttgttatatctaaaaaagatgtattgttagttaaaaaccatacgaaaatcacttaaagaattgtatctaagttttgtcct 16995726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 32318768 - 32318894
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||| |||||| || | || | ||||||| | |||||||||||||||||||||| || |||||||| |||||||  |||  ||||| || ||    
T  32318768 actaaattcaccatgatttcctcagatccataattttctcaaagtttgttatatccaaaaaatatatatttttaattaagaatcatatgaaaagcaccta 32318867  T
Q  124 cataattgtacctaaattttgtccttt 150  Q
     | |||||||| |||||||| ||||||    
T  32318868 aagaattgtacttaaattttctccttt 32318894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 64 - 150
Target Start/End: Complemental strand, 52824322 - 52824236
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttacataattgtacctaaattttgtccttt 150  Q
    ||||||| ||||||| |||||| |||||||||||||||||||| |||| ||||| || ||   |||||||||||| |||| ||||||    
T  52824322 aaagtttattatatctaaaaaatatgtatttttagttaagaaccatacgaaaagcacctaaggaattgtacctaagttttctccttt 52824236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 4688295 - 4688388
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatcc-aaaaaagatgtatttttagttaagaactatacaaaaa 116  Q
    ||||||||||| ||||||| || ||||||  |||||| | |||||||||||||||| |||||| ||||||||||| |||||||| |||| ||||    
T  4688295 actaaattcactgtgatttcctcaaattcacaattttctcaaagtttgttatatccaaaaaaatatgtatttttaattaagaaccatacgaaaa 4688388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 21048753 - 21048845
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttta-aagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaag 117  Q
    |||||||||||| |||||| || |||| | ||||||| |  |||||||||||||| |||||| |||||||||||||||||||| |||| |||||    
T  21048753 actaaattcaccatgatttcctcaaatccataattttctcgaagtttgttatatc-aaaaaatatgtatttttagttaagaaccatacgaaaag 21048845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 23928615 - 23928696
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaa 105  Q
    |||||||||||| |||||| || |||| | ||||||| | ||| |||||||||||||||||| || ||||||||||||||||    
T  23928615 actaaattcaccatgatttcctcaaatccataattttctcaaaatttgttatatccaaaaaaaatatatttttagttaagaa 23928696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 149
Target Start/End: Complemental strand, 36860744 - 36860655
Alignment:
Q  60 ttttaaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttacataattgtacctaaattttgtcctt 149  Q
    ||||| |||||||||||||| |||||||| |||||||  |||| ||  ||| | |||| ||||| | |||||||||||||||||||||||    
T  36860744 ttttagagtttgttatatcctaaaaagatatatttttcattaataatcatatacaaagcacttaaaaaattgtacctaaattttgtcctt 36860655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 42274540 - 42274633
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatcc-aaaaaagatgtatttttagttaagaactatacaaaaa 116  Q
    |||||||||||| |||||| || |||| | ||||||| | |||||||||||||||| |||||| || ||||||||||||||||| |||| ||||    
T  42274540 actaaattcaccatgatttcctcaaatccataattttctcaaagtttgttatatccaaaaaaatatatatttttagttaagaaccatacgaaaa 42274633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 148
Target Start/End: Original strand, 3422490 - 3422601
Alignment:
Q  38 tgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttacataattgtacct 136  Q
    ||||||||| |||| | ||||||| | ||||||| || ||||  |||||||| ||||||||||||| ||| |||| ||||  || || | ||||||||||    
T  3422490 tgattttctcaaatccataattttctcaaagtttattgtatcgtaaaaagatatatttttagttaaaaaccatacgaaaaacacctaaagaattgtacct 3422589  T
Q  137 aaattttgtcct 148  Q
    || |||||||||    
T  3422590 aagttttgtcct 3422601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 42020203 - 42020257
Alignment:
Q  89 gtatttttagttaagaactatacaaaaagtacttacataattgtacctaaatttt 143  Q
    |||||||||||||||||| ||||||||||||  || | |||||||||||| ||||    
T  42020203 gtatttttagttaagaaccatacaaaaagtatctagagaattgtacctaagtttt 42020257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 9e-27; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 25 - 149
Target Start/End: Original strand, 3970539 - 3970664
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||| |||||| ||||||| | ||||||| | |||||||||||||||||||||| |||||||||||||||||||| |||| |||||||| ||    
T  3970539 actaaattcaccatgatttccttaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacgaaaagtaccta 3970638  T
Q  124 cataattgtacctaaattttgtcctt 149  Q
       |||||||||||| |||| |||||    
T  3970639 agaaattgtacctaagttttctcctt 3970664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 27 - 150
Target Start/End: Complemental strand, 12789727 - 12789603
Alignment:
Q  27 taaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttaca 125  Q
    |||||||||| |||||| || |||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||| ||||  || ||      
T  12789727 taaattcaccatgatttcctcaaattcataattttttcaaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacgaaaaacacctaag 12789628  T
Q  126 taattgtacctaaattttgtccttt 150  Q
     |||||||||||| |||| ||||||    
T  12789627 gaattgtacctaagttttctccttt 12789603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 25 - 148
Target Start/End: Original strand, 21969205 - 21969329
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||| |||||| ||||||| | ||||||| | |||||||||||||||||||||| |||||||||||||||||||| |||| ||||| || ||    
T  21969205 actaaattcaccatgatttccttaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacgaaaagcaccta 21969304  T
Q  124 cataattgtacctaaattttgtcct 148  Q
       |||||||||||| |||| ||||    
T  21969305 aggaattgtacctaagttttctcct 21969329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 25 - 148
Target Start/End: Original strand, 21991641 - 21991765
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||| |||||| ||||||| | ||||||| | |||||||||||||||||||||| |||||||||||||||||||| |||| ||||| || ||    
T  21991641 actaaattcaccatgatttccttaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacgaaaagcaccta 21991740  T
Q  124 cataattgtacctaaattttgtcct 148  Q
       |||||||||||| |||| ||||    
T  21991741 aggaattgtacctaagttttctcct 21991765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 13078211 - 13078330
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||| |||||| ||||||| | ||||||| | |||||||||||||||||||||| |||||||||||||||||||  |||| |||||||| ||    
T  13078211 actaaattcaccatgatttccttaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaatcatacgaaaagtaccta 13078310  T
Q  124 cataattgtacctaaatttt 143  Q
       |||||||||||| ||||    
T  13078311 agaaattgtacctaagtttt 13078330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 12838200 - 12838107
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaag 117  Q
    |||||||||||| |||||| || |||| | ||||||| | |||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  12838200 actaaattcaccatgatttcctcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacaaaaag 12838107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 25 - 149
Target Start/End: Complemental strand, 45487922 - 45487797
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaattttttaaa-gtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||| |||||| || |||||| ||||||| | || ||||||||||||||||||| |||||||||||||||||||| |||| ||||| || ||    
T  45487922 actaaattcaccatgatttcctcaaattcataattttctcaatgtttgttatatccaaaaaatatgtatttttagttaagaaccatacgaaaagcaccta 45487823  T
Q  124 cataattgtacctaaattttgtcctt 149  Q
       |||||||||||| |||| |||||    
T  45487822 aggaattgtacctaagttttctcctt 45487797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 25 - 147
Target Start/End: Original strand, 42105431 - 42105554
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    ||||||||||||||||||||||||||| | ||||| | | |||||||||||| || ||||||  ||||||||||||||||||| |||||||||  || ||    
T  42105431 actaaattcaccgtgattttcttaaatccataattctctcaaagtttgttatctctaaaaaaattgtatttttagttaagaaccatacaaaaaacaccta 42105530  T
Q  124 cataattgtacctaaattttgtcc 147  Q
    |  |||||||| ||| ||||||||    
T  42105531 cgaaattgtacttaagttttgtcc 42105554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 25488429 - 25488513
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttacataattgtacctaaattttgtcct 148  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||| || ||   |||||||||||| |||| ||||    
T  25488429 aaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacaaaaagcacctaaggaattgtacctaagttttctcct 25488513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 25561094 - 25561010
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttacataattgtacctaaattttgtcct 148  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||| || ||   |||||||||||| |||| ||||    
T  25561094 aaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacaaaaagcacctaaggaattgtacctaagttttctcct 25561010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 26906577 - 26906453
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||  |||||| || |||||| ||||||| | |||||||||||||||||||||| || ||||||||||||||||| |||| ||||| || ||    
T  26906577 actaaattcactatgatttcctcaaattcataattttctcaaagtttgttatatccaaaaaatatatatttttagttaagaaccatacgaaaaggaccta 26906478  T
Q  124 cataattgtacctaaattttgtcct 148  Q
       |||||||||||| |||| ||||    
T  26906477 aggaattgtacctaagttttctcct 26906453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 48 - 151
Target Start/End: Complemental strand, 46664276 - 46664172
Alignment:
Q  48 aaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttacataattgtacctaaattttgtc 146  Q
    |||||| ||||||| | ||||||||||||||  |||||| ||||||||||||||||||||||||| |||| ||| ||   ||||||||||||||||| ||    
T  46664276 aaattcataattttctcaaagtttgttatattaaaaaaatatgtatttttagttaagaactatacgaaaaatacctaagaaattgtacctaaattttctc 46664177  T
Q  147 ctttt 151  Q
    |||||    
T  46664176 ctttt 46664172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 143
Target Start/End: Complemental strand, 10017233 - 10017118
Alignment:
Q  29 aattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttacata 127  Q
    |||||| | ||||||||| |||| | ||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||  ||||| || ||   |    
T  10017233 aattcatcatgattttctcaaatccataattttttcaaagtttgttatatccaaaaaatatgtatttttagttaagaaccatatgaaaagcacctaagga 10017134  T
Q  128 attgtacctaaatttt 143  Q
    ||||||||||| ||||    
T  10017133 attgtacctaagtttt 10017118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 36278804 - 36278923
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||  |||||| || |||||| ||||||| | |||||||||||||||||||||| || ||||||||||||||||| |||| ||||| || ||    
T  36278804 actaaattcactatgatttcctcaaattcataattttctcaaagtttgttatatccaaaaaatatatatttttagttaagaaccatacgaaaaggaccta 36278903  T
Q  124 cataattgtacctaaatttt 143  Q
       |||||||||||| ||||    
T  36278904 aggaattgtacctaagtttt 36278923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 36822848 - 36822927
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttacataattgtacctaaatttt 143  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||| ||||| || || | |||||||||||| ||||    
T  36822848 aaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacgaaaagcacctaaaaaattgtacctaagtttt 36822927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 148
Target Start/End: Original strand, 37506187 - 37506298
Alignment:
Q  38 tgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttacataattgtacct 136  Q
    |||||||||||||||| ||||||| | |||||||||||| ||||||||| |||||||||||||||||||| | || ||||  || || | |||||||| |    
T  37506187 tgattttcttaaattcataattttctcaaagtttgttatctccaaaaaaaatgtatttttagttaagaaccacacgaaaaacacctaaagaattgtacat 37506286  T
Q  137 aaattttgtcct 148  Q
    || |||||||||    
T  37506287 aagttttgtcct 37506298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 38125242 - 38125319
Alignment:
Q  40 attttcttaaattcgtaatttt-ttaaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaa 116  Q
    |||||||||||| | ||||||| |||||||||||||||| ||||||| |||||||||||||||||||| |||| ||||    
T  38125242 attttcttaaatccataattttcttaaagtttgttatatacaaaaaatatgtatttttagttaagaaccatacgaaaa 38125319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 43150603 - 43150510
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaag 117  Q
    |||||||||||  |||||| || |||||| ||||||| | |||||||||||||||||||||| |||||||||||||||| ||| |||| |||||    
T  43150603 actaaattcactatgatttcctcaaattcataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaaaaaccatacgaaaag 43150510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 10254692 - 10254572
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaa-aaaagatgtatttttagttaagaactatacaaaaagtactt 122  Q
    |||||||||| | ||||||||| |||| | ||||||||| |||||||||||||||||| |||| |||||||||||||||||||| |||  ||||| || |    
T  10254692 actaaattcatcatgattttctcaaatccataattttttcaaagtttgttatatccaaaaaaatatgtatttttagttaagaaccatatgaaaagcacct 10254593  T
Q  123 acataattgtacctaaatttt 143  Q
    |   |||||||||||| ||||    
T  10254592 aaggaattgtacctaagtttt 10254572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 148
Target Start/End: Original strand, 32237442 - 32237566
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||| ||| ||||||||| | || | ||||||| | |||||||||||||||||||||| ||||||||||| |||||||| |||| ||||| || ||    
T  32237442 actaaatttaccatgattttctcagatccataattttctcaaagtttgttatatccaaaaaatatgtatttttaattaagaaccatacgaaaagcaccta 32237541  T
Q  124 cataattgtacctaaattttgtcct 148  Q
       |||||||||||| |||| ||||    
T  32237542 aggaattgtacctaagttttctcct 32237566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 44920694 - 44920786
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaa 116  Q
    |||||||| ||  ||||||||| |||||  ||||||| | ||||||| |||||||||||||| |||||||||||||||||||||||| |||||    
T  44920694 actaaatttacaatgattttctcaaatttataattttctcaaagtttattatatccaaaaaatatgtatttttagttaagaactataaaaaaa 44920786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 64 - 151
Target Start/End: Original strand, 10441346 - 10441433
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttacataattgtacctaaattttgtcctttt 151  Q
    |||||||||||||||||||||| ||||||||||||||||||||  ||| ||||| || ||   |||||||||||| |||| |||||||    
T  10441346 aaagtttgttatatccaaaaaatatgtatttttagttaagaaccgtaccaaaagcacctaaggaattgtacctaagttttctcctttt 10441433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 45712951 - 45713070
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||| |||||| || |||  | ||||||| | |||||||||||||||||||||| |||||||||||||| ||||| |||| ||||| || ||    
T  45712951 actaaattcaccatgatttcctcaaagccataattttatcaaagtttgttatatccaaaaaatatgtatttttagtttagaaccatacgaaaagcaccta 45713050  T
Q  124 cataattgtacctaaatttt 143  Q
       |||||||||||| ||||    
T  45713051 aggaattgtacctaagtttt 45713070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 25446373 - 25446279
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaag-atgtatttttagttaagaactatacaaaaag 117  Q
    |||||||||||| |||||| || |||| | ||||||| | ||||||||||||||||||||||  |||||||||||||||||||| |||| |||||    
T  25446373 actaaattcaccatgatttcctcaaatccataattttctcaaagtttgttatatccaaaaaaatatgtatttttagttaagaaccatacgaaaag 25446279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 36329268 - 36329321
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaag 117  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||| |||||    
T  36329268 aaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacgaaaag 36329321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 44611429 - 44611521
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaa 116  Q
    |||||||||||| ||||||  | |||||| ||||||| | ||||||||||||||| |||||| || ||||||||||||| ||| |||||||||    
T  44611429 actaaattcaccatgatttcttcaaattcataattttctcaaagtttgttatatcaaaaaaatatatatttttagttaaaaaccatacaaaaa 44611521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 55340341 - 55340424
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaag-atgtatttttagttaagaac 106  Q
    |||| ||||||| ||||||||| |||| | ||||||| | ||||||||||||||||||||||  ||||||||||||||||||||    
T  55340341 actatattcaccatgattttctcaaatccataattttctcaaagtttgttatatccaaaaaaatatgtatttttagttaagaac 55340424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 151
Target Start/End: Original strand, 1476600 - 1476726
Alignment:
Q  26 ctaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttac 124  Q
    ||||||||||| |||||| ||||||| | ||||| | | |||||||||||| || ||||||  ||||||||||||||||||| |||  ||||| || ||     
T  1476600 ctaaattcaccatgatttccttaaatccataattctctcaaagtttgttatctctaaaaaaattgtatttttagttaagaaccatatgaaaagcacctaa 1476699  T
Q  125 ataattgtacctaaattttgtcctttt 151  Q
      |||||||||||| |||| |||||||    
T  1476700 ggaattgtacctaagttttatcctttt 1476726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 149
Target Start/End: Original strand, 4072321 - 4072447
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaag-atgtatttttagttaagaactatacaaaaagtactt 122  Q
    |||||||||||| |||||| ||  ||| | ||||||| | ||||||||||||||||||||||  |||||||||||||||||||| |||| ||||  || |    
T  4072321 actaaattcaccatgatttcctcgaatccataattttctcaaagtttgttatatccaaaaaaatatgtatttttagttaagaaccatacgaaaaacacct 4072420  T
Q  123 acataattgtacctaaattttgtcctt 149  Q
    |   |||||||||||| |||| |||||    
T  4072421 aaggaattgtacctaagttttctcctt 4072447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 22101288 - 22101194
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaa-aaaagatgtatttttagttaagaactatacaaaaag 117  Q
    |||||||||||  |||||| || |||| | ||||||| | |||||||||||||||||| |||| |||||||||||||||||||| |||| |||||    
T  22101288 actaaattcactatgatttcctcaaatccataattttctcaaagtttgttatatccaacaaaatatgtatttttagttaagaaccatacgaaaag 22101194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 13724035 - 13724128
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatcc-aaaaaagatgtatttttagttaagaactatacaaaaa 116  Q
    |||||||||||| ||||||  | |||||| ||||||| | |||||||||||||||| |||||| |||||||||||||||| || ||||| ||||    
T  13724035 actaaattcaccatgatttcttcaaattcataattttctcaaagtttgttatatccaaaaaaatatgtatttttagttaaaaattatacgaaaa 13724128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 36657521 - 36657574
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaag 117  Q
    ||||||||||||||| |||||| |||||||||||||||||||| |||| |||||    
T  36657521 aaagtttgttatatcaaaaaaatatgtatttttagttaagaaccatacgaaaag 36657574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 8831864 - 8831744
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaag-atgtatttttagttaagaactatacaaaaagtactt 122  Q
    |||||||||||| ||||||  | |||| | ||||||| | ||||||||||||||||||||||  |||||||||||||| ||||| |||| ||||| || |    
T  8831864 actaaattcaccatgatttcttcaaatccataattttctcaaagtttgttatatccaaaaaaatatgtatttttagtttagaaccatacgaaaagcacct 8831765  T
Q  123 acataattgtacctaaatttt 143  Q
    |   |||||||||||| ||||    
T  8831764 aaggaattgtacctaagtttt 8831744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 35368856 - 35368793
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaaga 87  Q
    |||||||||||| ||||||||| |||| | ||||||| | ||||||||||||||||||||||||    
T  35368856 actaaattcaccatgattttctcaaatccataattttctcaaagtttgttatatccaaaaaaga 35368793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 148
Target Start/End: Original strand, 39850434 - 39850517
Alignment:
Q  65 aagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttacataattgtacctaaattttgtcct 148  Q
    ||||||||||||||||||||| || ||||||||||||||||  |||| ||||| || ||   |||||||||||| |||| ||||    
T  39850434 aagtttgttatatccaaaaaatatatatttttagttaagaatcatacgaaaagcacctaaggaattgtacctaagttttctcct 39850517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 22176232 - 22176138
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaa-aaaagatgtatttttagttaagaactatacaaaaag 117  Q
    |||||||||||  |||||| || |||| | ||||||| | ||||||||| |||||||| |||| |||||||||||||||||||| |||| |||||    
T  22176232 actaaattcactatgatttcctcaaatccataattttctcaaagtttgtaatatccaacaaaatatgtatttttagttaagaaccatacgaaaag 22176138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 147
Target Start/End: Original strand, 46222076 - 46222200
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttt-ttaaagtttgttatatccaaaaaagatgtatttttagtt--aagaactatacaaaaagtact 121  Q
    |||||||||||| |||||||||||||||| ||||||| |   |||||| |||| ||||||||| ||| |||||||||  || ||| |||||||||  ||     
T  46222076 actaaattcaccatgattttcttaaattcataattttctcttagtttg-tataaccaaaaaaggtgtgtttttagttaaaaaaacgatacaaaaaacacc 46222174  T
Q  122 tacataattgtacctaaattttgtcc 147  Q
    || | |||||||||||| ||||||||    
T  46222175 taaagaattgtacctaacttttgtcc 46222200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 143
Target Start/End: Complemental strand, 5529975 - 5529895
Alignment:
Q  64 aaagtttgttatatccaaaaaag-atgtatttttagttaagaactatacaaaaagtacttacataattgtacctaaatttt 143  Q
    |||||||| |||||||||||||  |||||||||||||||||||| |||| ||||| || ||   |||||||||||| ||||    
T  5529975 aaagtttgatatatccaaaaaaatatgtatttttagttaagaaccatacgaaaagcacctaagaaattgtacctaagtttt 5529895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 10117624 - 10117556
Alignment:
Q  40 attttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaag-atgtatttttagttaagaac 106  Q
    ||||||| |||| | ||||||| | ||||||||||||||||||||||  ||||||||||||||||||||    
T  10117624 attttctcaaatccataattttctcaaagtttgttatatccaaaaaaatatgtatttttagttaagaac 10117556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 50099557 - 50099462
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaa--aaaagatgtatttttagttaagaactatacaaaaag 117  Q
    |||||||||||| | |||| || |||||| ||||||| | ||||||||||||||||||  |||| ||||||||||| |||| ||| |||| |||||    
T  50099557 actaaattcaccataatttcctcaaattcataattttctcaaagtttgttatatccaaaaaaaatatgtatttttaattaaaaaccatacgaaaag 50099462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 26976903 - 26977013
Alignment:
Q  38 tgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttacataattgtacct 136  Q
    ||||||||| |||| | ||||||| | ||||||| || ||||  |||||||| ||||||||||||| ||| |||| ||||  || || | ||||||||||    
T  26976903 tgattttctcaaatccataattttctcaaagtttattgtatcgtaaaaagatatatttttagttaaaaaccatacgaaaaacacctaaagaattgtacct 26977002  T
Q  137 aaattttgtcc 147  Q
    || ||||||||    
T  26977003 aagttttgtcc 26977013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 39677324 - 39677406
Alignment:
Q  27 taaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaacta 108  Q
    |||||||||  ||||||||| |||||| ||||||||| ||||||||||||   ||||||| || |||||||| |||| |||||    
T  39677324 taaattcactatgattttctcaaattcataattttttcaaagtttgttatgcacaaaaaatatatatttttaattaaaaacta 39677406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 143
Target Start/End: Original strand, 43639132 - 43639249
Alignment:
Q  28 aaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatcc-aaaaaagatgtatttttagttaagaactatacaaaaagtacttaca 125  Q
    ||||||||| ||||||  | |||| | ||||||| | |||||||||||||||| |||||| || ||||||||||||||||  |||| ||||| || ||      
T  43639132 aaattcaccatgatttcttcaaatccataattttctcaaagtttgttatatccaaaaaaatatatatttttagttaagaatcatacgaaaagcacctaag 43639231  T
Q  126 taattgtacctaaatttt 143  Q
     |||||||||||| ||||    
T  43639232 gaattgtacctaagtttt 43639249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 26 - 149
Target Start/End: Complemental strand, 35807057 - 35806933
Alignment:
Q  26 ctaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttac 124  Q
    ||||||||||| ||||||||| ||||   ||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||  ||||| || ||     
T  35807057 ctaaattcaccatgattttctcaaatctttaatttttttaaagtttgttatattcaaaaaagatgtatttttagttaagaaccatatgaaaagcacctaa 35806958  T
Q  125 ataattgtacctaaattttgtcctt 149  Q
    | |||||||| ||||||||||||||    
T  35806957 agaattgtacttaaattttgtcctt 35806933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 12744952 - 12744857
Alignment:
Q  22 ttgactaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaa 116  Q
    ||||||||||||||| |||||| || |||||| ||||||| | |||||||||||||||||||||| |||||||||||||||| ||| |||||||||    
T  12744952 ttgactaaattcaccatgatttcctcaaattcataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaaaaaccatacaaaaa 12744857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 148
Target Start/End: Original strand, 21259780 - 21259902
Alignment:
Q  27 taaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttaca 125  Q
    |||||||||| |||||| || ||| || ||||||| | |||||||||||||||||||||| |||||||||||||||||||| |||  |||||||| ||      
T  21259780 taaattcaccatgatttcctcaaaatcataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaaccataagaaaagtacctaag 21259879  T
Q  126 taattgtacctaaattttgtcct 148  Q
     ||||||||||||||||| ||||    
T  21259880 gaattgtacctaaattttctcct 21259902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 12808037 - 12807942
Alignment:
Q  22 ttgactaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaa 116  Q
    ||||||||||||||| |||||| ||||||| | ||||||||| ||||||||||||||| |||||| |||||||||||||||| ||| |||| ||||    
T  12808037 ttgactaaattcaccatgatttccttaaatccataattttttcaaagtttgttatatctaaaaaatatgtatttttagttaaaaaccatacgaaaa 12807942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 149
Target Start/End: Complemental strand, 4266105 - 4265980
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttt-ttaaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||||||||||  | |||| | ||||||| ||||||||||||| |||||||||| |||||||||||||||||||| |||| ||||  || ||    
T  4266105 actaaattcaccgtgatttcttcaaatccataattttcttaaagtttgttacatccaaaaaatatgtatttttagttaagaaccatacgaaaaacaccta 4266006  T
Q  124 cataattgtacctaaattttgtcctt 149  Q
       |||||||||||| |||| |||||    
T  4266005 agaaattgtacctaagttttctcctt 4265980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 153
Target Start/End: Complemental strand, 43539230 - 43539102
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||| |||||||||||||||| | ||||||| | |||||||||||||||||||||| |||||||| ||||| ||||| |||| |||| ||| ||    
T  43539230 actaaattcatcgtgattttcttaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttatagttcagaaccatacgaaaaataccta 43539131  T
Q  124 cataattgtacctaaattttgtccttttga 153  Q
       ||||||| |||| |||| |||||||||    
T  43539130 agaaattgta-ctaagttttctccttttga 43539102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 1138682 - 1138558
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    ||||||||||   ||||||||| |||| | ||||||| | |||||||||||||||||||||| |||||||||||||||||||| |||| ||||| ||  |    
T  1138682 actaaattcattatgattttctcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacgaaaagcaccaa 1138583  T
Q  124 cataattgtacctaaattttgtcct 148  Q
     | |||||||||||| |||| ||||    
T  1138582 aagaattgtacctaagttttctcct 1138558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 8364678 - 8364800
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||| |||||||||||||||  ||||| | | |||||||||||| || ||||||  | ||||||||||||||||| |||||||||| || ||    
T  8364678 actaaattcaccatgattttcttaaatttataattctctcaaagtttgttatgtctaaaaaaattatatttttagttaagaaccatacaaaaagcaccta 8364777  T
Q  124 cataattgtacctaaattttgtc 146  Q
       |||||||||||| |||||||    
T  8364778 aggaattgtacctaagttttgtc 8364800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 1456070 - 1456157
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatac 111  Q
    ||||||||||| || ||||||| |||| | ||||||| | |||||||||||||||||||||| ||||||||||||| |||||| ||||    
T  1456070 actaaattcactgtaattttctcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagtcaagaaccatac 1456157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 13754339 - 13754458
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||| | |||| || |||||| ||||||| | |||||||| |||||| |||||| |||||||||||||||||||| |||| ||||  || ||    
T  13754339 actaaattcaccataatttcctcaaattcataattttctcaaagtttgctatatcaaaaaaatatgtatttttagttaagaaccatacgaaaaacaccta 13754438  T
Q  124 cataattgtacctaaatttt 143  Q
      ||||||||| ||||||||    
T  13754439 agtaattgtacataaatttt 13754458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 21262026 - 21261973
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaag 117  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||| |||||    
T  21262026 aaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacgaaaag 21261973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 37552356 - 37552449
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaag 117  Q
    |||||||||||| ||| || || |||||| ||||||| | ||||||||||||| | |||||| ||||||||||||| |||||| ||||||||||    
T  37552356 actaaattcaccatgacttcctcaaattcataattttctcaaagtttgttataacaaaaaaatatgtatttttagtcaagaaccatacaaaaag 37552449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 37655200 - 37655292
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaag 117  Q
    |||||||||||| ||| || || |||||| ||||||| | ||||||||||||| | |||||| |||||||||||||||||||| ||||||||||    
T  37655200 actaaattcaccatgacttcctcaaattcataattttctcaaagtttgttataac-aaaaaatatgtatttttagttaagaaccatacaaaaag 37655292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 18236591 - 18236508
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaaga--tgtatttttagttaagaa 105  Q
    |||||||||  |||||||||||||||| | ||||||||| |||||||||||||||||||||| |  ||||||||||| ||||||    
T  18236591 actaaattcgtcgtgattttcttaaatacataattttttcaaagtttgttatatccaaaaaaaaattgtatttttagctaagaa 18236508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 151
Target Start/End: Complemental strand, 15855926 - 15855839
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttacataattgtacctaaattttgtcctttt 151  Q
    ||||||||||||||| |||||| |||||||||||||||||||| |||| ||||| |  ||   |||||||||||| |||| |||||||    
T  15855926 aaagtttgttatatcaaaaaaatatgtatttttagttaagaaccatacgaaaagcatctaaggaattgtacctaagttttctcctttt 15855839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 12191477 - 12191423
Alignment:
Q  62 ttaaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaa 116  Q
    |||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||    
T  12191477 ttaaagtttgttatatccaaaaaatatgtaattttatttaagaaccatacaaaaa 12191423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 64 - 150
Target Start/End: Original strand, 35420700 - 35420786
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttacataattgtacctaaattttgtccttt 150  Q
    ||||||||||||||| |||||| |||||||||||||||||||| |||| ||||| |  ||   |||||||||||| |||| ||||||    
T  35420700 aaagtttgttatatcaaaaaaatatgtatttttagttaagaaccatacgaaaagcatctaaggaattgtacctaagttttctccttt 35420786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 16473038 - 16472985
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaag 117  Q
    ||||||||||||||| |||||| |||||||||||||||||||| |||| |||||    
T  16473038 aaagtttgttatatcaaaaaaatatgtatttttagttaagaaccatacgaaaag 16472985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 149
Target Start/End: Complemental strand, 20476554 - 20476429
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||| | |||||| || |||| | ||||||| | ||| |||||||||||  ||||| |||||||||||||||||||| |||| ||||| |  ||    
T  20476554 actaaattcatcatgatttcctcaaatccataattttctcaaaatttgttatatcacaaaaatatgtatttttagttaagaaccatacgaaaagcatcta 20476455  T
Q  124 cataattgtacctaaattttgtcctt 149  Q
     | |||||||||||| |||| |||||    
T  20476454 gagaattgtacctaagttttctcctt 20476429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 24397333 - 24397413
Alignment:
Q  64 aaagtttgttatatccaaaaaag-atgtatttttagttaagaactatacaaaaagtacttacataattgtacctaaatttt 143  Q
    ||||||||||||||||||||||  |||||||||||||||||||| |||| ||||| || ||   |||||||||||| ||||    
T  24397333 aaagtttgttatatccaaaaaaatatgtatttttagttaagaaccatacgaaaagcacctaaggaattgtacctaagtttt 24397413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 42522908 - 42522960
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaa 116  Q
    ||||||||||||||| ||| ||||||||||||||||||||||| | |||||||    
T  42522908 aaagtttgttatatctaaataagatgtatttttagttaagaaccaaacaaaaa 42522960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 1164845 - 1164963
Alignment:
Q  27 taaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatcc-aaaaaagatgtatttttagttaagaactatacaaaaagtacttac 124  Q
    |||||| ||| ||||||| |||||| | ||||||||| ||||||| |||||||| |||||| || |||||||| |||||||| |||| ||||| |  ||     
T  1164845 taaatttaccatgatttttttaaatccataattttttaaaagtttattatatccaaaaaaatatttatttttaattaagaaccatacgaaaagcagctaa 1164944  T
Q  125 ataattgtacctaaatttt 143  Q
      |||||||||||||||||    
T  1164945 ggaattgtacctaaatttt 1164963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 35276340 - 35276434
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttt-ttaaagtttgttatatccaaaaaaga-tgtatttttagttaagaactatacaaaaag 117  Q
    |||||||| ||| ||||||| | |||| | ||||||| ||||||||| ||||||| ||||||   ||||||||||| ||||||||||||||||||    
T  35276340 actaaatttaccatgattttatcaaatccataattttcttaaagtttattatatctaaaaaaatgtgtatttttaggtaagaactatacaaaaag 35276434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 10132357 - 10132313
Alignment:
Q  72 ttatatccaaaaaagatgtatttttagttaagaactatacaaaaa 116  Q
    ||||||||||||||||| |||||||| |||||||| |||||||||    
T  10132357 ttatatccaaaaaagatatatttttaattaagaaccatacaaaaa 10132313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 33629393 - 33629476
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaa--agatgtatttttagttaagaa 105  Q
    |||||||||||  ||||||||| |||| | ||||||| | |||||||||||||||||||||  | || ||||||||||||||||    
T  33629393 actaaattcactatgattttctcaaatccataattttctcaaagtttgttatatccaaaaaatatatatatttttagttaagaa 33629476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 19976393 - 19976292
Alignment:
Q  17 agttattgactaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaag-atgtatttttagttaagaactatacaaa 114  Q
    ||||||||| |||||| ||| |||||| || |||| | ||||||| | ||||||| | ||||||||||||  | |||||||||||||||||| |||| ||    
T  19976393 agttattgattaaatttaccatgatttcctcaaatccataattttctcaaagtttatcatatccaaaaaaatacgtatttttagttaagaaccatacgaa 19976294  T
Q  115 aa 116  Q
    ||    
T  19976293 aa 19976292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 780839 - 780895
Alignment:
Q  22 ttgactaaattcaccgtgattttcttaaattcgtaatttt-ttaaagtttgttatat 77  Q
    |||| |||||||||| |||||| ||||||| | ||||||| ||||||||||||||||    
T  780839 ttgattaaattcaccatgatttccttaaatccataattttcttaaagtttgttatat 780895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 16157611 - 16157667
Alignment:
Q  60 ttttaaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaa 116  Q
    ||||||||||||||||| | | ||||  ||||||||||||||||||| ||| |||||    
T  16157611 ttttaaagtttgttataactataaaaattgtatttttagttaagaaccataaaaaaa 16157667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 25 - 151
Target Start/End: Complemental strand, 51186 - 51059
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||  |||||| ||||||||| ||||||| | |||||||||||||||||||||| || ||||||||||||||||| |||| ||||| || ||    
T  51186 actaaattcactatgatttccttaaattcataattttctcaaagtttgttatatccaaaaaatatatatttttagttaagaaccatacgaaaaggaccta 51087  T
Q  124 cataattgtacctaaattttgtcctttt 151  Q
       |||||||||||| |||| |||||||    
T  51086 aggaattgtacctaagttttctcctttt 51059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 25 - 151
Target Start/End: Original strand, 9933617 - 9933744
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||| ||||||||| |||| | ||||||| | ||||||| ||||||| |||||| |||||||||||||||||||| |||| ||||| || ||    
T  9933617 actaaattcaccatgattttctcaaatccataattttctcaaagtttattatatctaaaaaatatgtatttttagttaagaaccatacgaaaagcaccta 9933716  T
Q  124 cataattgtacctaaattttgtcctttt 151  Q
       ||||||||||||||||| |||||||    
T  9933717 agaaattgtacctaaattttctcctttt 9933744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 149
Target Start/End: Complemental strand, 16705856 - 16705731
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||  ||||||||| |||  | ||||||| | |||||||||||||||||||||| |||||||||||||||||||| |||| ||||| || ||    
T  16705856 actaaattcactatgattttctcaaagccataattttatcaaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacgaaaagcaccta 16705757  T
Q  124 cataattgtacctaaattttgtcctt 149  Q
       |||||||||||| |||| |||||    
T  16705756 aggaattgtacctaagttttctcctt 16705731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 3116999 - 3116875
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    ||||||||||   ||||||||| |||| | ||||||| | |||||||||||||||||||||| |||||||||||||||||||| |||| ||||| ||  |    
T  3116999 actaaattcattatgattttctcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacgaaaagcaccaa 3116900  T
Q  124 cataattgtacctaaattttgtcct 148  Q
     | |||||||||||| |||| ||||    
T  3116899 aagaattgtacctaagttttctcct 3116875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 148
Target Start/End: Original strand, 9281395 - 9281519
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||  |||||| || |||||| ||||||| | |||||||||||||||||||||| || ||||||||||||||||| |||| ||||| || ||    
T  9281395 actaaattcactatgatttcctcaaattcataattttctcaaagtttgttatatccaaaaaatatatatttttagttaagaaccatacgaaaaggaccta 9281494  T
Q  124 cataattgtacctaaattttgtcct 148  Q
       |||||||||||| |||| ||||    
T  9281495 aggaattgtacctaagttttctcct 9281519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 149
Target Start/End: Complemental strand, 45408746 - 45408623
Alignment:
Q  27 taaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttaca 125  Q
    |||||| ||| |||||| || |||| | ||||||| | |||||||||||||||||||||| |||||||||||||||||||| |||||||||  || ||      
T  45408746 taaatttaccatgatttcctcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacaaaaaacacctaag 45408647  T
Q  126 taattgtacctaaattttgtcctt 149  Q
     |||||||||||| |||| |||||    
T  45408646 gaattgtacctaagttttctcctt 45408623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 12850590 - 12850683
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaag 117  Q
    |||||||| ||| |||||| || |||| | ||||||| | |||||||||||||||||||||| |||||||||||||||||||| |||| |||||    
T  12850590 actaaatttaccatgatttcctcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacgaaaag 12850683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 27920695 - 27920602
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaag 117  Q
    |||||||||||| |||||| || |||| | ||||||||| |||||||||||||||||||||| ||||| |||||||||||| | |||| |||||    
T  27920695 actaaattcaccatgatttcctcaaatccataattttttcaaagtttgttatatccaaaaaatatgtagttttagttaagacccatacgaaaag 27920602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 34490539 - 34490455
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttacataattgtacctaaattttgtcct 148  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||| ||||  || || | |||||||||||| |||| ||||    
T  34490539 aaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacgaaaaacacctaaagaattgtacctaagttttctcct 34490455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 42713825 - 42713952
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaag-atgtatttttagttaagaactatacaaaaagtactt 122  Q
    |||||||||||| ||||||||| |||| | ||||||| | ||||||| ||||||||||||||  |||||||||||||||||||  || | ||||| ||||    
T  42713825 actaaattcaccatgattttctcaaatccataattttctcaaagtttattatatccaaaaaaatatgtatttttagttaagaatcatgcgaaaagcactt 42713924  T
Q  123 acataattgtacctaaattttgtccttt 150  Q
    |   |||||||||||| |||| ||||||    
T  42713925 aagaaattgtacctaagttttctccttt 42713952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 138
Target Start/End: Complemental strand, 2818789 - 2818675
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||| |||||| || |||| | ||||||| | |||||||| ||||||||||||| |||||||||||||||||||  |||| ||||| || ||    
T  2818789 actaaattcaccatgatttcctcaaatccataattttctcaaagtttgatatatccaaaaaatatgtatttttagttaagaatcatacgaaaagcaccta 2818690  T
Q  124 cataattgtacctaa 138  Q
       ||||||||||||    
T  2818689 aggaattgtacctaa 2818675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 24101920 - 24101973
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaag 117  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||| |||||    
T  24101920 aaagtttgttatatccaaaaaatatgtatttttagttaagaaccatacgaaaag 24101973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 9850806 - 9850897
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaa 116  Q
    |||||||| ||| |||||||||||||| | ||||||| | ||| ||||||||||| |||||| |||||||||||||||||||| |||| ||||    
T  9850806 actaaatttaccatgattttcttaaatccataattttctcaaaatttgttatatc-aaaaaatatgtatttttagttaagaaccatacgaaaa 9850897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 29229452 - 29229507
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagta 119  Q
    ||||||| |||||||||||||| |||||||||||||||||||| |||| |||||||    
T  29229452 aaagtttattatatccaaaaaatatgtatttttagttaagaaccatacgaaaagta 29229507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 29342752 - 29342807
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagta 119  Q
    ||||||| |||||||||||||| |||||||||||||||||||| |||| |||||||    
T  29342752 aaagtttattatatccaaaaaatatgtatttttagttaagaaccatacgaaaagta 29342807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 143
Target Start/End: Complemental strand, 34455968 - 34455889
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttacataattgtacctaaatttt 143  Q
    |||||||||||||||||||||| ||||||||||| |||||||| |||| ||||| || ||   |||||||||||| ||||    
T  34455968 aaagtttgttatatccaaaaaatatgtatttttaattaagaaccatacgaaaagcacctaaggaattgtacctaagtttt 34455889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 149
Target Start/End: Complemental strand, 37341023 - 37340964
Alignment:
Q  90 tatttttagttaagaactatacaaaaagtacttacataattgtacctaaattttgtcctt 149  Q
    ||||||||||||||||| ||||||||| |||||| | |||||||||||| ||||||||||    
T  37341023 tatttttagttaagaaccatacaaaaaatacttaaaaaattgtacctaagttttgtcctt 37340964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 39243071 - 39243150
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttacataattgtacctaaatttt 143  Q
    |||||||||||||||||| | || |||||||||||| |||||| ||||||||| ||| || | ||||||| |||||||||    
T  39243071 aaagtttgttatatccaacataggtgtatttttagtcaagaaccatacaaaaaatacctaaagaattgtatctaaatttt 39243150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 1924028 - 1924121
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaag-atgtatttttagttaagaactatacaaaaa 116  Q
    |||||||||||| |||||| ||  ||| | ||||||| | ||||||||||||||||||||||  |||||||||||||||||||| |||| ||||    
T  1924028 actaaattcaccatgatttcctcgaatccataattttctcaaagtttgttatatccaaaaaaatatgtatttttagttaagaaccatacgaaaa 1924121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 6605858 - 6605777
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaa 105  Q
    |||||||| ||| |||||| || |||| | ||||||| | ||||||||||||||||||| || |||||||||||||||||||    
T  6605858 actaaatttaccatgatttcctcaaatgcataattttctcaaagtttgttatatccaaataatatgtatttttagttaagaa 6605777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 20892968 - 20892883
Alignment:
Q  64 aaagtttgttatatcca-aaaaagatgtatttttagttaagaactatacaaaaagtacttacataattgtacctaaattttgtcct 148  Q
    ||||||||||||||||| ||||| |||||||||||||||||||| |||| ||||| || ||   |||||||||||| |||| ||||    
T  20892968 aaagtttgttatatccataaaaatatgtatttttagttaagaaccatacgaaaagcacctaagaaattgtacctaagttttctcct 20892883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 147
Target Start/End: Complemental strand, 7116453 - 7116370
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttacataattgtacctaaattttgtcc 147  Q
    |||| ||||| ||||||| |||| ||||||||||||| ||||| |||| |||||||  || | |||||||||||| ||||||||    
T  7116453 aaagattgttctatccaacaaaggtgtatttttagttgagaaccatacgaaaagtatctaaagaattgtacctaagttttgtcc 7116370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 147
Target Start/End: Original strand, 22346467 - 22346546
Alignment:
Q  68 tttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttacataattgtacctaaattttgtcc 147  Q
    ||||||| | ||||||||||||||||||||||||| ||| |||| ||||| || |||  || || |||||||||||||||    
T  22346467 tttgttaaaaccaaaaaagatgtatttttagttaaaaaccatacgaaaagcacatacggaaatgcacctaaattttgtcc 22346546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 117
Target Start/End: Complemental strand, 23835997 - 23835906
Alignment:
Q  28 aaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaag-atgtatttttagttaagaactatacaaaaag 117  Q
    ||||| ||| |||||| || |||| | ||||||| | ||||||||||||||||||||||  |||||||||||||||||||| |||| |||||    
T  23835997 aaatttaccatgatttcctcaaatccataattttctcaaagtttgttatatccaaaaaaatatgtatttttagttaagaaccatacgaaaag 23835906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 22269805 - 22269767
Alignment:
Q  64 aaagtttgttatatccaaaaaagatgtatttttagttaa 102  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  22269805 aaagtttgttatatccaaaaaatatgtatttttagttaa 22269767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 143
Target Start/End: Complemental strand, 7737148 - 7737068
Alignment:
Q  64 aaagtttgttatatccaaaaaag-atgtatttttagttaagaactatacaaaaagtacttacataattgtacctaaatttt 143  Q
    ||||||||||||||||||||||  |||||||||||||||||||  |||| ||||| || ||   |||||||||||| ||||    
T  7737148 aaagtttgttatatccaaaaaaatatgtatttttagttaagaatcataccaaaagcacctaagaaattgtacctaagtttt 7737068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 43476069 - 43476008
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttt-ttaaagtttgttatatccaaaaaa 85  Q
    |||||||||||| |||||| || |||||| ||||||| | ||||||| ||||||||||||||    
T  43476069 actaaattcaccatgatttcctcaaattcataattttctcaaagtttattatatccaaaaaa 43476008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 43858552 - 43858609
Alignment:
Q  94 tttagttaagaactatacaaaaagtacttacataattgtacctaaattttgtcctttt 151  Q
    ||||||||||||| |||| |||||||| ||   ||||||||||||||||| |||||||    
T  43858552 tttagttaagaaccatacgaaaagtacctaaggaattgtacctaaattttctcctttt 43858609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 149
Target Start/End: Complemental strand, 48249 - 48124
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||| ||||||||| |||| | ||||||| | |||||||||||||||||||||| ||||||||||| |||| ||| |||| ||||| || ||    
T  48249 actaaattcaccatgattttctcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttaattaaaaaccatacgaaaagcaccta 48150  T
Q  124 cataattgtacctaaattttgtcctt 149  Q
     | |||| ||| ||| ||||||||||    
T  48149 aaaaattatacgtaagttttgtcctt 48124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0595 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 5780 - 5712
Alignment:
Q  68 tttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtacttacataattgtacct 136  Q
    |||||||||||||||||| |||||||||||||||||||| |||| ||||| || || | ||||||||||    
T  5780 tttgttatatccaaaaaatatgtatttttagttaagaaccatacgaaaagcacctaaagaattgtacct 5712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 138325 - 138395
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttt-ttaaagtttgttatatccaaaaaagatgtattt 94  Q
    |||||||||| | |||||||||||||| | || |||| ||||||||| |||||||||||||||||||||||    
T  138325 actaaattcatcatgattttcttaaatccatattttttttaaagtttattatatccaaaaaagatgtattt 138395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 72361 - 72418
Alignment:
Q  66 agtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||||||||||||| |||||||||||||||| ||| |||| ||||| |||||    
T  72361 agtttgttatatccaaaaaatatgtatttttagttaaaaaccatacgaaaagcactta 72418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 7209 - 7085
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatacaaaaagtactta 123  Q
    |||||||||| | |||||| || |||| | ||||||| | |||||||||||||||||||| | || ||||||||||||||||  |||| ||||  || ||    
T  7209 actaaattcatcatgatttcctcaaatccataattttctcaaagtttgttatatccaaaatatatatatttttagttaagaatcatacgaaaaacaccta 7110  T
Q  124 cataattgtacctaaattttgtcct 148  Q
       ||||||||||||||||| ||||    
T  7109 aggaattgtacctaaattttctcct 7085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 10236 - 10152
Alignment:
Q  27 taaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaagatgtatttttagttaagaactatac 111  Q
    |||||||||| ||||||||| | || | ||||||| | ||||||||||||||||| |||| || ||||||||||||||||| ||||    
T  10236 taaattcaccatgattttctcacatccataattttctcaaagtttgttatatcca-aaaatatatatttttagttaagaaccatac 10152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 1987 - 2107
Alignment:
Q  25 actaaattcaccgtgattttcttaaattcgtaatttttt-aaagtttgttatatccaaaaaag-atgtatttttagttaagaactatacaaaaagtactt 122  Q
    |||||||||||| |||||| || |||| | |||||||   ||||||||||||||| ||||||  | |||||||||||||||||| ||| |||||| || |    
T  1987 actaaattcaccatgatttcctcaaatccataattttcacaaagtttgttatatctaaaaaaatacgtatttttagttaagaaccatataaaaagcacct 2086  T
Q  123 acataattgtacctaaatttt 143  Q
    |   |||||||||||| ||||    
T  2087 aaggaattgtacctaagtttt 2107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 151
Target Start/End: Complemental strand, 1992 - 1935
Alignment:
Q  94 tttagttaagaactatacaaaaagtacttacataattgtacctaaattttgtcctttt 151  Q
    ||||||||||||| |||||||||| || || | |||| |||||||||||| |||||||    
T  1992 tttagttaagaaccatacaaaaagcacctaaacaattatacctaaattttctcctttt 1935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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