View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4140_low_8 (Length: 335)
Name: NF4140_low_8
Description: NF4140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4140_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 53557739 - 53558048
Alignment:
| Q |
18 |
acaatgacataaaaaactattggaacacaagattgaagaagaaattactcggaaagcgaaaacagtcaaatatcaacaacagcttgatgaaccaaaagga |
117 |
Q |
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| T |
53557739 |
acaatgacataaaaaactattggaacacaagattgaagaagaaattactcggaaagcgaaaacagtcgaatataaacaactgcttgatgaaccaaaagga |
53557838 |
T |
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| Q |
118 |
cacaaatggaatagatgagaattcttattcaaattcattaagtagctcagctcttgagagacttcaacttcatatgcaacttcaaagccttcaaaaccct |
217 |
Q |
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| T |
53557839 |
cacaaatggaatagatgagaattcttattcaaattcattaagtagctcagctcttgagagacttcaacttcatatgcaacttcaaagccttcaaaaccct |
53557938 |
T |
|
| Q |
218 |
ttgtctttttacagtaataaccctgctgcactagtttggccaaagttgcatccttctcaagaaaaaatgatccaaattagccttcaaaactctaataaca |
317 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53557939 |
ttgtctttttacaataataaccctgctgcactagtttggccaaagttgcatccttctcaagaaaaaatgatccaaattagccttcaaaactctaataaca |
53558038 |
T |
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| Q |
318 |
accctatgat |
327 |
Q |
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|||||||||| |
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| T |
53558039 |
accctatgat |
53558048 |
T |
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