View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4141_low_1 (Length: 649)
Name: NF4141_low_1
Description: NF4141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4141_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 18)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 20 - 640
Target Start/End: Complemental strand, 3144394 - 3143771
Alignment:
| Q |
20 |
aagtagtataaaacataaaaggcagttccctgctttgttaaacaacaactgctagtgttccttttcaataatggaattttaagaagcaacatcggaatat |
119 |
Q |
| |
|
|||||| ||||||| |||||||||| || ||||||||||||||| | |||||||||||||||||||||||| ||||||||| || || || | ||||| |
|
|
| T |
3144394 |
aagtagaataaaac-taaaaggcagatctctgctttgttaaacaccggctgctagtgttccttttcaataatagaattttaaaaaacagcaatgaaatat |
3144296 |
T |
|
| Q |
120 |
atctcaatgcaaaatggcaaattatcaccaagttatttagttacctttacaaatgatactagctcaacctgataatacaaggttgaattaggaggaacca |
219 |
Q |
| |
|
|| ||||||| ||| || |||||||| ||||||||||| |||||||||| || |||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
3144295 |
gtcacaatgcacaattgctaattatcatcaagttatttatttacctttacgaacgatactagctcaacctcataatacacggttgaattaggaggaacca |
3144196 |
T |
|
| Q |
220 |
ctgccaattccagccgagactctgatgaaccaaaagcatattgtggcggaatagtcaacaaagctacctcacccttcttcatggtcattacagctatatt |
319 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||| ||||||| ||| |
|
|
| T |
3144195 |
ctgccaattcctgctgagactctgatgaaccaaaagcatattcaggcgtaatagtcaacaaagctacctcacctttcttcatggtcagtacagctttatc |
3144096 |
T |
|
| Q |
320 |
aagcacatcaatcacttgctctgttcaatacaacaaacactcactttagttgatgtaaaaacaaattatggtgagaaggtgaaacaatgggaaaattaaa |
419 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||| || || |||||||| ||||| ||||||||||| ||||||||| ||||||||| ||||||||||||| |
|
|
| T |
3144095 |
aagcccatcaatcacttgctctgctcaatacaaaaagcattcactttatttgatttaaaaacaaatgatggtgagagggtgaaacattgggaaaattaaa |
3143996 |
T |
|
| Q |
420 |
attaccctcgtctgttttaaattcaaacagatccagttcatcatcatcaccatcactatagcccttgttcaaaagtacagtgccatcttgcagcttacca |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3143995 |
attaccctcgtctgttttaaattcaaacagatccgcttcatcatcatcaccatcattatatcccttgttcaaaaatacagtgccatcttgcagcttacca |
3143896 |
T |
|
| Q |
520 |
attagttttactacaaaaatgcaaaatgaggagacaacacatcagaaacga--cactaaatccatt--nnnnnnngagccatcatttcataatatattag |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
3143895 |
attagttttactacaaaaatgcaaaatgaggagataacacatcagaaccgatgcactaaatccattaaaaaaaaagagccatcatatcataatatattag |
3143796 |
T |
|
| Q |
616 |
caatcaatcaatgatgaatgatgat |
640 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
3143795 |
caatcaatcaatgatgaatgatgat |
3143771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 20 - 640
Target Start/End: Original strand, 2890871 - 2891491
Alignment:
| Q |
20 |
aagtagtataaaacataaaaggcagttccctgctttgttaaacaacaactgctagtgttccttttcaataatggaattttaagaagcaacatcggaatat |
119 |
Q |
| |
|
|||||| ||||||| |||||||||| || ||||||||||||||| | |||||||||||||||||||||||| ||||||||| || || || | ||||| |
|
|
| T |
2890871 |
aagtagaataaaac-taaaaggcagatctctgctttgttaaacaccggctgctagtgttccttttcaataatagaattttaaaaaacagcaatgaaatat |
2890969 |
T |
|
| Q |
120 |
atctcaatgcaaaatggcaaattatcaccaagttatttagttacctttacaaatgatactagctcaacctgataatacaaggttgaattaggaggaacca |
219 |
Q |
| |
|
|| ||||||| ||| || |||||||| ||||||||||| |||||||||| || |||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
2890970 |
gtcacaatgcacaattgctaattatcatcaagttatttatttacctttacgaacgatactagctcaacctcataatac--ggttgaattaggaggaacca |
2891067 |
T |
|
| Q |
220 |
ctgccaattccagccgagactctgatgaaccaaaagcatattgtggcggaatagtcaacaaagctacctcacccttcttcatggtcattacagctatatt |
319 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
2891068 |
ctgccaattcctgctgagactctgatgaaccaaaagcatattcaggcgtaatagtcaacaaagctacctcacccttcttcatggtcagtacagctttatc |
2891167 |
T |
|
| Q |
320 |
aagcacatcaatcacttgctctgttcaatacaacaaacactcactttagttgatgtaaaaacaaattatggtgagaaggtgaaacaatgggaaaattaaa |
419 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||| || || |||||||| ||||| ||||||||||| ||||||||| ||||||||| ||||||||||||| |
|
|
| T |
2891168 |
aagcccatcaatcacttgctctgctcaatacaaaaagcattcactttatttgatttaaaaacaaatgatggtgagagggtgaaacattgggaaaattaaa |
2891267 |
T |
|
| Q |
420 |
attaccctcgtctgttttaaattcaaacagatccagttcatcatcatcaccatcactatagcccttgttcaaaagtacagtgccatcttgcagcttacca |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2891268 |
attaccctcgtctgttttaaattcaaacagatccgcttcatcatcatcaccatcattatatcccttgttcaaaaatacagtgccatcttgcagcttacca |
2891367 |
T |
|
| Q |
520 |
attagttttactacaaaaatgcaaaatgaggagacaacacatcagaaacga--cactaaatccatt-nnnnnnngagccatcatttcataatatattagc |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
2891368 |
attagttttactacaaaaatgcaaaatgaggagataacacatcagaaccgatgcactaaatccattaaaaaagagagccatcatatcataatatattagc |
2891467 |
T |
|
| Q |
617 |
aatcaatcaatgatgaatgatgat |
640 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
2891468 |
aatcaatcaatgatgaatgatgat |
2891491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 20 - 566
Target Start/End: Original strand, 2876421 - 2876960
Alignment:
| Q |
20 |
aagtagtataaaacataaaaggcagttccctgctttgttaaacaacaactgctagtgttccttttcaataatggaattttaagaagcaacatcggaatat |
119 |
Q |
| |
|
|||||| |||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| || ||||| | ||||| |
|
|
| T |
2876421 |
aagtagaataaaa-ataaaaggcagatccctgctttgttaaacaacatctgctagtgttccttttcaataatagaattttaaaaaacaacaatgaaatat |
2876519 |
T |
|
| Q |
120 |
atctcaatgcaaaatggcaaattatcaccaagttatttagttacctttacaaatgatactagctcaacctgataatacaaggttgaattaggaggaacca |
219 |
Q |
| |
|
|| ||||||| ||| | |||||||| ||||||||||| ||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
2876520 |
gtcacaatgcacaattactaattatcatcaagttatttatatacctttacgaatgatactagctcaacctcataatacacggttgaattaggaggaacca |
2876619 |
T |
|
| Q |
220 |
ctgccaattccagccgagactctgatgaaccaaaagcatattgtggcggaatagtcaacaaagctacctcacccttcttcatggtcattacagctatatt |
319 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||| ||||||| ||| |
|
|
| T |
2876620 |
ctgccaattcctgctgagactctgatgaaccaaaagcatattcaggcgcaatagtcaacaaagctacctcatccttcttcatggtcagtacagctctatc |
2876719 |
T |
|
| Q |
320 |
aagcacatcaatcacttgctctgttcaatacaacaaacactcactttagttgatgtaaaaacaaattatggtgagaaggtgaaacaatgggaaaattaaa |
419 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||| || || |||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
2876720 |
aagcccatcaatcacttgctctgctcaatacaaaaagcattcactttagttgatataaaaacaaattatggtgagagggtgaaacatggggaaaattaaa |
2876819 |
T |
|
| Q |
420 |
attaccctcgtctgttttaaattcaaacagatccagttcatcatcatcaccatcactatagcccttgttcaaaagtacagtgccatcttgcagcttacca |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| | ||||||||||||||||| ||||| || |||| ||||||||||||||||||||||||| |
|
|
| T |
2876820 |
attaccctcgtctgttttaaattcaaacagctcca------cttcatcaccatcactatatcccttcttaaaaaatacagtgccatcttgcagcttacca |
2876913 |
T |
|
| Q |
520 |
attagttttactacaaaaatgcaaaatgaggagacaacacatcagaa |
566 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| | | |||||||||| |
|
|
| T |
2876914 |
attagtttcactacaaaaatgcaaaatgaggatatatcacatcagaa |
2876960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 20 - 583
Target Start/End: Complemental strand, 2795295 - 2794738
Alignment:
| Q |
20 |
aagtagtataaaacataaaaggcagttccctgctttgttaaacaacaactgctagtgttccttttcaataatggaattttaagaagcaacatcggaatat |
119 |
Q |
| |
|
|||||| |||||| ||||||||||| |||||| ||||||||||| || |||||||||||||||||||||||| ||||||||| || ||||| | | ||| |
|
|
| T |
2795295 |
aagtagaataaaa-ataaaaggcagatccctgatttgttaaacaccagctgctagtgttccttttcaataatagaattttaaaaaacaacaatgaagtat |
2795197 |
T |
|
| Q |
120 |
atctcaatgcaaaatggcaaattatcaccaagttatttagttacctttacaaatgatactagctcaacctgataatacaaggttgaattaggaggaacca |
219 |
Q |
| |
|
|| ||||||| ||| || |||||||| ||||||||||| |||||||||| || |||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
2795196 |
gtcacaatgcacaattgctaattatcatcaagttatttatttacctttacgaacgatactagctcaacctcataatacacggttgaattaggaggaacca |
2795097 |
T |
|
| Q |
220 |
ctgccaattccagccgagactctgatgaaccaaaagcatattgtggcggaatagtcaacaaagctacctcacccttcttcatggtcattacagctatatt |
319 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
2795096 |
ctgccaattcctgctgagactctgatgaaccaaaagcatattcaggtgtaatagtcaacaaagctacctcacccttcttcatggtcagtacagctttatc |
2794997 |
T |
|
| Q |
320 |
aagcacatcaatcacttgctctgttcaatacaacaaacactcactttagttgatgtaaaaacaaattatggtgagaaggtgaaacaatgggaaaattaaa |
419 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||| || || |||||||||||||| ||||||||||||||||||||| |||||||| |||| ||||||||| |
|
|
| T |
2794996 |
aagcccatcaatcacttgctctgctcaatacaaaaagcattcactttagttgatataaaaacaaattatggtgagagggtgaaac-atggaaaaattaaa |
2794898 |
T |
|
| Q |
420 |
attaccctcgtctgttttaaattcaaacagatccagttcatcatcatcaccatcactatagcccttgttcaaaagtacagtgccatcttgcagcttacca |
519 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||| | ||||||||||||||||||||||| || |||| ||||||||||||||||||||||||| |
|
|
| T |
2794897 |
attaccctcatctgttttaaattcaaacagctcca------cttcatcaccatcactatagcccttcttaaaaaatacagtgccatcttgcagcttacca |
2794804 |
T |
|
| Q |
520 |
attagttttactacaaaaatgcaaaatgaggagacaacacatcagaaacga--cactaaatccatt |
583 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| | | |||||||||| ||| ||||||||||||| |
|
|
| T |
2794803 |
attagtttcactacaaaaatgcaaaatgaggatatatcacatcagaaccgatgcactaaatccatt |
2794738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 346
Target Start/End: Complemental strand, 3158948 - 3158619
Alignment:
| Q |
17 |
aagaagtagtataaaacataaaaggcagttccctgctttgttaaacaacaactgctagtgttccttttcaataatggaattttaagaagcaacatcggaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3158948 |
aagaagtagtataaaacataaaaggcagttccctgctttgttaaacaacaactgctagtgttccttttcaataatggaattttaataagcaacatcggaa |
3158849 |
T |
|
| Q |
117 |
tatatctcaatgcaaaatggcaaattatcaccaagttatttagttacctttacaaatgatactagctcaacctgataatacaaggttgaattaggaggaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3158848 |
tatatctcaatgcaaaatggcaaattatcaccaagttatttagtaacctttacaaacgatactagctcaacctgataatacaaggttgaattaggaggaa |
3158749 |
T |
|
| Q |
217 |
ccactgccaattccagccgagactctgatgaaccaaaagcatattgtggcggaatagtcaacaaagctacctcacccttcttcatggtcattacagctat |
316 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3158748 |
ccactgccaattcctgccgagactctgatgaaccaaaagcatattgtggcgcaatagtcaacaaagctacctcacccttcttcatggtcattacagctat |
3158649 |
T |
|
| Q |
317 |
attaagcacatcaatcacttgctctgttca |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
3158648 |
attaagcacatcaatcacttgctctgttca |
3158619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 154 - 365
Target Start/End: Original strand, 3495108 - 3495319
Alignment:
| Q |
154 |
atttagttacctttacaaatgatactagctcaacctgataatacaaggttgaattaggaggaaccactgccaattccagccgagactctgatgaaccaaa |
253 |
Q |
| |
|
||||| ||||||||| |||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
3495108 |
atttatttacctttatgaatgatactaactcaacctcataatacaaggttgaattaggagggaccactgccaattcctgccgagactcggatgaaccaaa |
3495207 |
T |
|
| Q |
254 |
agcatattgtggcggaatagtcaacaaagctacctcacccttcttcatggtcattacagctatattaagcacatcaatcacttgctctgttcaatacaac |
353 |
Q |
| |
|
|||||| | || | |||||||||||| ||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||| |||||||||| |
|
|
| T |
3495208 |
agcatactcgggtgcaatagtcaacaatgctacctcacccttcttcatggtcattacagctctatcgagcccatcaatcacttgctctgctcaatacaac |
3495307 |
T |
|
| Q |
354 |
aaacactcactt |
365 |
Q |
| |
|
||||| |||||| |
|
|
| T |
3495308 |
aaacattcactt |
3495319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 118 - 365
Target Start/End: Original strand, 14388666 - 14388913
Alignment:
| Q |
118 |
atatctcaatgcaaaatggcaaattatcaccaagttatttagttacctttacaaatgatactagctcaacctgataatacaaggttgaattaggaggaac |
217 |
Q |
| |
|
|||| |||||||| ||| ||| | ||||| |||||||||| ||||||||| || ||||||| |||||||| |||||||||||||||||||||||| || |
|
|
| T |
14388666 |
atatatcaatgcacaattgcataatatcattaagttatttatttacctttatgaacgatactaactcaacctcataatacaaggttgaattaggagggac |
14388765 |
T |
|
| Q |
218 |
cactgccaattccagccgagactctgatgaaccaaaagcatattgtggcggaatagtcaacaaagctacctcacccttcttcatggtcattacagctata |
317 |
Q |
| |
|
||||||||||||| || ||||||| ||||||||||||||||| | || | |||||||||||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
14388766 |
cactgccaattcctgctgagactcagatgaaccaaaagcatactcgggtgcaatagtcaacaatgctacctcacccttcttcatggtcattacagcttta |
14388865 |
T |
|
| Q |
318 |
ttaagcacatcaatcacttgctctgttcaatacaacaaacactcactt |
365 |
Q |
| |
|
| ||| |||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
14388866 |
tcgagcccatcaatcacttgctctgctcaatacaacaaacattcactt |
14388913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 148 - 281
Target Start/End: Original strand, 2882598 - 2882731
Alignment:
| Q |
148 |
caagttatttagttacctttacaaatgatactagctcaacctgataatacaaggttgaattaggaggaaccactgccaattccagccgagactctgatga |
247 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||| |||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2882598 |
caagttatttatttacctttacaaatgatgctagctcgacctcataacacaaggttgaattaggaggaaccactgccaattcctgccgagactctgatga |
2882697 |
T |
|
| Q |
248 |
accaaaagcatattgtggcggaatagtcaacaaa |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
2882698 |
accaaaagcatattgtggcggaatagtcaacaaa |
2882731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 189 - 446
Target Start/End: Original strand, 3500294 - 3500549
Alignment:
| Q |
189 |
tgataatacaaggttgaattaggaggaaccactgccaattccagccgagactctgatgaaccaaaagcatattgtggcggaatagtcaacaaagctacct |
288 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||| |||| || ||| ||| ||||||||||||||||| | |||||||||||||| ||||||| |
|
|
| T |
3500294 |
tgattatacaaggttgaataaggaggaaccactgccatttcctgcggagtgtctaatgaaccaaaagcatatcgatatggaatagtcaacaacgctacct |
3500393 |
T |
|
| Q |
289 |
cacccttcttcatggtcattacagctatattaagcacatcaatcacttgctctgttcaatacaacaaacactcactttagttgatgtaaaaacaaatt-a |
387 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||| | ||||| | || |||| ||||||||||||||| | |||||||||| | ||||||||||| | |
|
|
| T |
3500394 |
cacccttcttcatggtcattacagctctatcaagcccttcaattattttatctgctcaatacaacaaacaat-actttagttggtacaaaaacaaattaa |
3500492 |
T |
|
| Q |
388 |
tggtgagaaggtgaaacaatgggaaaattaaaattaccctcgtctgttttaaattcaaa |
446 |
Q |
| |
|
| ||||| ||| |||| || |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3500493 |
ttgtgag-aggccaaac-attggaaaattcaaattaccctcgtctgttttaaattcaaa |
3500549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 164 - 371
Target Start/End: Complemental strand, 1791057 - 1790850
Alignment:
| Q |
164 |
ctttacaaatgatactagctcaacctgataatacaaggttgaattaggaggaaccactgccaattccagccgagactctgatgaaccaaaagcatattgt |
263 |
Q |
| |
|
|||||| |||||||||| |||||||| ||||| ||||||||||| | ||||||||||||||||||| | |||||||| |||||||||||| |||| | |
|
|
| T |
1791057 |
ctttacgaatgatactaactcaacctcataatgtaaggttgaatttgcaggaaccactgccaattcctgtcgagactcggatgaaccaaaaccatactta |
1790958 |
T |
|
| Q |
264 |
ggcggaatagtcaacaaagctacctcacccttcttcatggtcattacagctatattaagcacatcaatcacttgctctgttcaatacaacaaacactcac |
363 |
Q |
| |
|
|| | |||||||||| | |||||||||||||||||||| ||||||||||| ||| |||| | | |||||||| ||| |||| |||||| ||| |||| |
|
|
| T |
1790957 |
ggtgcaatagtcaacgatgctacctcacccttcttcatactcattacagctctatcaagccctctagtcacttgcgctgctcaacacaacagacattcac |
1790858 |
T |
|
| Q |
364 |
tttagttg |
371 |
Q |
| |
|
||| |||| |
|
|
| T |
1790857 |
tttcgttg |
1790850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 397 - 551
Target Start/End: Complemental strand, 8627758 - 8627613
Alignment:
| Q |
397 |
ggtgaaacaatgggaaaattaaaattaccctcgtctgttttaaattcaaacagatccagttcatcatcatcaccatcactatagcccttgttcaaaagta |
496 |
Q |
| |
|
||||||||| ||| |||||| |||||||| ||||||||||||||||||||||| || | || ||||||||| | |||||||| || |||| || |
|
|
| T |
8627758 |
ggtgaaacattggaaaaattcaaattaccgtcgtctgttttaaattcaaacagctc-------tgat--tcaccatcattgtagcccttcttaaaaaata |
8627668 |
T |
|
| Q |
497 |
cagtgccatcttgcagcttaccaattagttttactacaaaaatgcaaaatgagga |
551 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
8627667 |
cagtgccatcttgcagcttaccaattagtttcactacgaaaatgcaaaatgagga |
8627613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 480 - 551
Target Start/End: Original strand, 3495433 - 3495504
Alignment:
| Q |
480 |
gcccttgttcaaaagtacagtgccatcttgcagcttaccaattagttttactacaaaaatgcaaaatgagga |
551 |
Q |
| |
|
|||||| ||||||| |||||||||||||||| ||||||||||||||| ||| |||| |||||||||||||| |
|
|
| T |
3495433 |
gcccttcttcaaaaagacagtgccatcttgcaacttaccaattagtttcactgcaaagatgcaaaatgagga |
3495504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 257
Target Start/End: Complemental strand, 4415578 - 4415473
Alignment:
| Q |
152 |
ttatttagttacctttacaaatgatactagctcaacctgataatacaaggttgaattaggaggaaccactgccaattccagccgagactctgatgaacca |
251 |
Q |
| |
|
||||||| ||||||| |||||||||||||||| ||| ||| ||||| |||||||||||||||| ||||| |||| || |||||||| |||||||| |
|
|
| T |
4415578 |
ttatttatttaccttcacaaatgatactagcttgaccctatacatcaagggcgaattaggaggaaccattgccagttcctgctgagactctcatgaacca |
4415479 |
T |
|
| Q |
252 |
aaagca |
257 |
Q |
| |
|
|||||| |
|
|
| T |
4415478 |
aaagca |
4415473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 186
Target Start/End: Original strand, 39188871 - 39189003
Alignment:
| Q |
53 |
tttgttaaacaacaactgctagtgttccttttcaataatggaattttaagaagcaacatcggaatatatctcaatgcaaaatggcaaattatcaccaagt |
152 |
Q |
| |
|
|||| ||| ||||| ||||||| || ||||| |||||| ||||||||| || |||||| | |||||| ||| |||| ||| ||||| ||||| ||||| |
|
|
| T |
39188871 |
tttgataagcaacagctgctagcttttcttttgaataatagaattttaataaccaacattgaaatataa-tcagtgcacaattgcaaagtatcatcaagt |
39188969 |
T |
|
| Q |
153 |
tatttagttacctttacaaatgatactagctcaa |
186 |
Q |
| |
|
||| || |||||||||| |||||||||||||||| |
|
|
| T |
39188970 |
tatgtatttacctttacgaatgatactagctcaa |
39189003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 480 - 551
Target Start/End: Original strand, 14389007 - 14389078
Alignment:
| Q |
480 |
gcccttgttcaaaagtacagtgccatcttgcagcttaccaattagttttactacaaaaatgcaaaatgagga |
551 |
Q |
| |
|
|||||| ||||||| ||||||| ||||||||| ||||||||| ||||| ||| |||| |||||||||||||| |
|
|
| T |
14389007 |
gcccttcttcaaaaatacagtgtcatcttgcaacttaccaataagtttcacttcaaagatgcaaaatgagga |
14389078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 246 - 281
Target Start/End: Complemental strand, 3151787 - 3151752
Alignment:
| Q |
246 |
gaaccaaaagcatattgtggcggaatagtcaacaaa |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
3151787 |
gaaccaaaagcatattgtggcggaatagtcaacaaa |
3151752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 487 - 549
Target Start/End: Original strand, 3500544 - 3500606
Alignment:
| Q |
487 |
ttcaaaagtacagtgccatcttgcagcttaccaattagttttactacaaaaatgcaaaatgag |
549 |
Q |
| |
|
||||||| || || |||| |||||||| ||||||||||||| |||||| |||||||||||||| |
|
|
| T |
3500544 |
ttcaaaaatatagagccaccttgcagcctaccaattagtttcactacacaaatgcaaaatgag |
3500606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 3506149 - 3506205
Alignment:
| Q |
149 |
aagttatttagttacctttacaaatgatactagctcaacctgataatacaaggttga |
205 |
Q |
| |
|
|||||||||| ||||||| | ||||||||| |||||||||||||||||| |||||| |
|
|
| T |
3506149 |
aagttatttatttaccttcaagaatgatactcgctcaacctgataatacatggttga |
3506205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 172 - 345
Target Start/End: Original strand, 18847662 - 18847832
Alignment:
| Q |
172 |
atgatactagctcaacctgataatacaaggttgaattaggaggaaccactgccaattccagccgagactctgatgaaccaaaagcatattgtggcggaat |
271 |
Q |
| |
|
|||| ||||||||||| | |||||||| |||||||||||||||||| ||||| ||| || | |||| ||||||| |||| ||||| | || | ||| |
|
|
| T |
18847662 |
atgacactagctcaacttcataatacacggttgaattaggaggaaca---gccaactcctgctgggactgtgatgaatcaaatgcatactcgggagcaat |
18847758 |
T |
|
| Q |
272 |
agtcaacaaagctacctcacccttcttcatggtcattacagctatattaagcacatcaatcacttgctctgttc |
345 |
Q |
| |
|
| |||| || |||||||||||||||||||| |||| ||||||| ||| |||| ||||||| ||||| ||||||| |
|
|
| T |
18847759 |
aatcaataatgctacctcacccttcttcatagtcaatacagctttatcaagcccatcaatgacttgttctgttc |
18847832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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