View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4141_low_2 (Length: 559)

Name: NF4141_low_2
Description: NF4141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4141_low_2
NF4141_low_2
[»] chr7 (1 HSPs)
chr7 (3-543)||(2310931-2311471)
[»] chr4 (10 HSPs)
chr4 (21-89)||(30271279-30271347)
chr4 (21-89)||(30280842-30280910)
chr4 (21-89)||(30304346-30304414)
chr4 (25-89)||(30220274-30220338)
chr4 (25-92)||(30264389-30264456)
chr4 (25-92)||(30287732-30287799)
chr4 (25-97)||(30032341-30032413)
chr4 (25-97)||(30048587-30048659)
chr4 (25-97)||(30062928-30063000)
chr4 (25-97)||(30228726-30228798)
[»] scaffold0024 (2 HSPs)
scaffold0024 (31-88)||(79567-79624)
scaffold0024 (34-88)||(72506-72560)


Alignment Details
Target: chr7 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 3 - 543
Target Start/End: Complemental strand, 2311471 - 2310931
Alignment:
Q  3 gagatgga-catcatcacgttgtagacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaatattattgtgcctaa 101  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2311471 gagatggatcatcagcacgttgtagacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaatattattgtgcctaa 2311372  T
Q  102 tgaattttttgtagggtagtttactatgtgaacttcccataatggtttcccttgaggtaatggctcaattgctatggttgacaaataatcttgaaaagat 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2311371 tgaattttttgtagggtagtttactatgtgaacttcccataatggtttcccttgaggtaatggctcaattgctatggttgacaaataatcttgaaaagat 2311272  T
Q  202 ttctcatagaattccacnnnnnnnccttttgcaaatattggttttttcacatggtcttttaagttcacatcaacttgcttccatcttttatcttcatttt 301  Q
    || ||||||||||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2311271 ttgtcatagaattccactttttttccttttgaaaatattggttttttcacatggtcttttaagttcacatcaacttgcttccatcttttatcttcatttt 2311172  T
Q  302 tatcttgtacctgttcacacatatttgaacaattctagtc-aggnnnnnnncaatataaatgatggaatttaatatattttaacaagagtaaaataagat 400  Q
    ||||||||||||||||||||||||||||||||| |||||| ||        | |||||||||||||  ||||||||||||||||||||||||||||||||    
T  2311171 tatcttgtacctgttcacacatatttgaacaatgctagtcaagaaaaaaaaccatataaatgatggtgtttaatatattttaacaagagtaaaataagat 2311072  T
Q  401 gtgatcgatatttaaaaaactaaaccgaatcgaacatttcaactgtttgaagtgtgaaccgaaacggtttgtggttcggtttgagcaatatatttagatt 500  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||  |||||||||||    
T  2311071 gtgatcgatatttaaaaaactaaaccgaatcggacatttcaaccgtttgatgtgtgaaccgaaacggtttgtggttcggtttgagca--atatttagatt 2310974  T
Q  501 tcattttcttctcattcaagtggtttaaagcattatggaaaat 543  Q
    |||||||||| |||||||||||||||||||||||||| |||||    
T  2310973 tcattttcttttcattcaagtggtttaaagcattatgaaaaat 2310931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 30271279 - 30271347
Alignment:
Q  21 ttgtagacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaatat 89  Q
    |||||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||    
T  30271279 ttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatat 30271347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 30280910 - 30280842
Alignment:
Q  21 ttgtagacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaatat 89  Q
    |||||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||    
T  30280910 ttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatat 30280842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 30304346 - 30304414
Alignment:
Q  21 ttgtagacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaatat 89  Q
    |||||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||    
T  30304346 ttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatat 30304414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 30220338 - 30220274
Alignment:
Q  25 agacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaatat 89  Q
    |||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||    
T  30220338 agacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatat 30220274  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 30264389 - 30264456
Alignment:
Q  25 agacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaatattat 92  Q
    |||||||||||||| |||||||| ||||| |||||||| ||||||||||| |||||||||||||||||    
T  30264389 agacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattat 30264456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 30287799 - 30287732
Alignment:
Q  25 agacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaatattat 92  Q
    |||||||||||||| |||||||| ||||| |||||||| ||||||||||| |||||||||||||||||    
T  30287799 agacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattat 30287732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 30032341 - 30032413
Alignment:
Q  25 agacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaatattattgtgc 97  Q
    |||||||||||||| |||||||| ||||| ||||| || ||||||||||| ||||||||||||||||| ||||    
T  30032341 agacaagaaagaagagcacccatgagagagtaaccgtcaccaagtgcatgatgaagtttgaatattatggtgc 30032413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 30048587 - 30048659
Alignment:
Q  25 agacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaatattattgtgc 97  Q
    |||||||||||||| |||||||| ||||| |||||||| |||||| |||| ||||||||||||||||| ||||    
T  30048587 agacaagaaagaagagcacccatgagagagtaaccatcaccaagtccatgatgaagtttgaatattatggtgc 30048659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 30062928 - 30063000
Alignment:
Q  25 agacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaatattattgtgc 97  Q
    |||||||||||||| |||||||| ||||| |||||||| |||||| |||| ||||||||||||||||| ||||    
T  30062928 agacaagaaagaagagcacccatgagagagtaaccatcaccaagtccatgatgaagtttgaatattatggtgc 30063000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 30228726 - 30228798
Alignment:
Q  25 agacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaatattattgtgc 97  Q
    |||||||||||||| |||| ||| ||||| |||||||| ||||||||||| | ||||||||||||||| ||||    
T  30228726 agacaagaaagaagagcactcatgagagagtaaccatcaccaagtgcatgattaagtttgaatattatggtgc 30228798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 79567 - 79624
Alignment:
Q  31 gaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaata 88  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  79567 gaaagaagtgcacccattagagagtaaccatctccaagtgcatgatgaagtttgaata 79624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 72506 - 72560
Alignment:
Q  34 agaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaata 88  Q
    ||||| || ||||||||||| |||||||||||||||||||| |||||||||||||    
T  72506 agaagagctcccattagagagtaaccatctccaagtgcatgatgaagtttgaata 72560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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