View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4141_low_4 (Length: 435)
Name: NF4141_low_4
Description: NF4141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4141_low_4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 17 - 435
Target Start/End: Original strand, 33995271 - 33995690
Alignment:
| Q |
17 |
aactatcttagcgagtttagcaggatagttatgagaacaatttatatcttatatataaaaacagtttaaccgcattctacctatgattataaaacaactt |
116 |
Q |
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| T |
33995271 |
aactatcttagcgagtttagcaggatagttatgagaacaatttatatcttatatataaaaacagtttaaccgcattctacctatgattataaaacaactt |
33995370 |
T |
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| Q |
117 |
atagataagtgtttatgataaacctatagtcaataagcaattaattaagctgattactcatacacaccctaaaaaagtgaattgagctaacttgcaaact |
216 |
Q |
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| T |
33995371 |
atagataagtgtttatgataaacctatagtcaataagcaattaattaagctgattactcatacacaccctaaaaaagtgaattgagctaacttgcaaact |
33995470 |
T |
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| Q |
217 |
tgttttttctgtaattggaaggttatatgatcaagtaatcagaacatg-ttttatgtatatataccgttgcatttagtacagatgcttctcttttagcaa |
315 |
Q |
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| T |
33995471 |
tgttttttctgtaattggaaggttatatgatcaagtaatcagaacatgtttttatgtatatataccgttgcattcagtacagatgcttctcttttagcaa |
33995570 |
T |
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| Q |
316 |
tggaaggtccaacaagtacctcaagtaatatgaatccgaagctataaatatgatcctctagctttttcatttgcctgaaatcaccctgaaatctgaaatg |
415 |
Q |
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| T |
33995571 |
tggaaggtccaacaagtacctcaagtaatatgaatccgaagctataaatatcatcctctagctttttcatttgcctgaaatcaccttaaaatctgaaatg |
33995670 |
T |
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| Q |
416 |
tttcaatgtgttttggaggt |
435 |
Q |
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| T |
33995671 |
tttcaatgtgttttggaggt |
33995690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 182 - 399
Target Start/End: Original strand, 34001737 - 34001955
Alignment:
| Q |
182 |
accctaaaaaagtga--attgagctaacttgcaaacttgttttttctgtaattggaaggttatatg-atcaagtaatcagaacatgttttatgtatatat |
278 |
Q |
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| T |
34001737 |
acccttaaaaagtgataattgtgctaacttgcgaaatcatttttt-tgtaattggaagattatatgtatcaagtaatctgaacatgttttatg----cat |
34001831 |
T |
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| Q |
279 |
accgttgcatttagtacagatgcttctcttttagca---atggaaggtccaacaagtacctcaagtaatatgaatccgaagctataaatatgatcctcta |
375 |
Q |
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||| |||||||||| |||| |||||||||||||||| || ||||||||||||||| ||||||||| ||||||||| ||||||||||||| |||||||| |
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| T |
34001832 |
accattgcatttagcacagctgcttctcttttagcaaacattgaaggtccaacaagtgcctcaagtattatgaatccaaagctataaatatcatcctcta |
34001931 |
T |
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| Q |
376 |
gctttttcatttgcctgaaatcac |
399 |
Q |
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| T |
34001932 |
gctttttcatttgcctgaaatcac |
34001955 |
T |
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