View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4141_low_9 (Length: 230)
Name: NF4141_low_9
Description: NF4141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4141_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 53430788 - 53430986
Alignment:
| Q |
16 |
tagggcaattgaaattatcagggacagtttttgaaataaccttaatagttgttgtgttatatcctatgtaacacaagaagttcaagtagtcaatggtgct |
115 |
Q |
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| T |
53430788 |
tagggcagttgaaattatcagggacagtttttgaaataaccttaatagttgttgtgttatatcctatgtaacacaagaagttcaagtagtcaatggtgct |
53430887 |
T |
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| Q |
116 |
ggtttcataaacaagacctggtcggtatgattcagttggtgttatttcacctgctccatagtcataaggtgtggcaatcgaccctaaatctgttgtaat |
214 |
Q |
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| T |
53430888 |
ggtttcataaacaagacctggtcggtatgattcagttggtgttatttcacctgctccatagtcataaggtgtggcaatcgaccctaaatctgttgtaat |
53430986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 48375026 - 48374830
Alignment:
| Q |
18 |
gggcaattgaaattatcagggacagtttttgaaataaccttaatagttgttgtgttatatcctatgtaacacaagaagttcaagtagtcaatggtgctgg |
117 |
Q |
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| T |
48375026 |
gggcagttgaaagtatcagggacagtttttgaaataaccttaatagtggttgtgttgtatcctatgtaacacaagtaattcaagtagtcaatggtgctag |
48374927 |
T |
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| Q |
118 |
tttcataaacaagacctggtcggtatgattcagttggtgttatttcacctgctccatagtcataaggtgtggcaatcgaccctaaatctgttgtaat |
214 |
Q |
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| T |
48374926 |
tttcataaacgagacctggttggaatgattcaattgttgttatgtcccctgctccatagtcataaggtgtggcaactgaccctaaatctgtagtaat |
48374830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 26095175 - 26095369
Alignment:
| Q |
16 |
tagggcaattgaaattatcagggacagtttttgaaataaccttaatagttgttgtgttatatcctatgtaacacaagaagttcaagtagtcaatggtgct |
115 |
Q |
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| T |
26095175 |
tagggcagttgaaactatcagggacagtttttgaaataaccttaatggtggttgtgttatatcctatataacacaagaagttcaagtagtcaatggtgct |
26095274 |
T |
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| Q |
116 |
ggtttcataaacaagacctggtcggtatgattcagttggtgttatttcacctgctccatagtcataaggtgtggcaatcgaccctaaatctgttg |
210 |
Q |
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| T |
26095275 |
ggtttcataaacgagccctggttggagtggttcagttgttgttatccccccagctccatagtcataaggtgtggcaattaaccctaaatctgttg |
26095369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 53422825 - 53423024
Alignment:
| Q |
16 |
tagggcaattgaaattatcagggacagtttttgaaataaccttaatagttg-ttgtgttatatcctatgtaacacaagaagttcaagtagtcaatggtgc |
114 |
Q |
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|||||||| ||||| || ||||||| |||||||| ||| ||||||| || | |||| || ||||||| |||||||||| ||||||||||||||||||||| |
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| T |
53422825 |
tagggcaactgaaactaccagggacggtttttgagatagccttaattgtgggttgtattgtatcctaggtaacacaagtagttcaagtagtcaatggtgc |
53422924 |
T |
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| Q |
115 |
tggtttcataaacaagacctggtcggtatgattcagttggtgttatttcacctgctccatagtcataaggtgtggcaatcgaccctaaatctgttgtaat |
214 |
Q |
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||||||||||||| || |||||| || ||||||||| | ||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
53422925 |
tggtttcataaactagccctggttggaatgattcagatattgtaatttcccctgctccatagtcataaggtgtggcaattgaccctaaatccgttgtaat |
53423024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 53307630 - 53307816
Alignment:
| Q |
18 |
gggcaattgaaattatcagggacagtttttgaaataaccttaatagttgttgtgttatatcctatgtaacacaagaagttcaagtagtcaatggtgctgg |
117 |
Q |
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||||| |||||| |||||||| | ||||| || |||| ||| | || ||||| || ||||||||||||||||| |||| | ||||||||||||||| | |
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| T |
53307630 |
gggcagttgaaactatcaggggcggttttagagataatcttcaccgtggttgtattcaatcctatgtaacacaagtagtttaggtagtcaatggtgctag |
53307729 |
T |
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| Q |
118 |
tttcataaacaagacctggtcggtatgattcagttggtgttatttcacctgctccatagtcataaggtgtggcaatcgaccctaaat |
204 |
Q |
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|||||||||| || || ||| || ||| |||||||| ||||||||| ||||||||||||||||||||||||||||| ||||| |||| |
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| T |
53307730 |
tttcataaactagcccgggttggaatggttcagttgttgttatttctcctgctccatagtcataaggtgtggcaattgaccccaaat |
53307816 |
T |
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