View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4142_high_13 (Length: 333)

Name: NF4142_high_13
Description: NF4142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4142_high_13
NF4142_high_13
[»] chr8 (2 HSPs)
chr8 (146-325)||(5655014-5655192)
chr8 (7-147)||(5655343-5655485)
[»] chr3 (1 HSPs)
chr3 (209-299)||(43606680-43606770)
[»] chr2 (1 HSPs)
chr2 (188-295)||(40704818-40704924)
[»] chr5 (2 HSPs)
chr5 (194-259)||(10901057-10901121)
chr5 (145-249)||(40137561-40137664)
[»] chr4 (1 HSPs)
chr4 (204-249)||(33094665-33094710)
[»] chr1 (1 HSPs)
chr1 (222-282)||(2897332-2897392)


Alignment Details
Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 146 - 325
Target Start/End: Complemental strand, 5655192 - 5655014
Alignment:
Q  146 aaaattttctgttactaaaagtcatgtcttttgtagtggggttggggaatcaacagttagaaaaaattgaaataaggggaccaaaaaactgaattttgaa 245  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||    
T  5655192 aaaattttctgttactaaaagtcaagtcttttgtagtggggttggggaatcaatagttagaaaaa-ttgaaataaggggaccaaaaaactgaatttttaa 5655094  T
Q  246 ataggggtaccaaacttcagaaaaatgaaaataggggcaaccaaagtgcatttaggccaaatataaaattgttgcctttg 325  Q
    ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5655093 ataagggtaccaaacttcagaaaaatgaaaatagggggaaccaaagtgcatttaggccaaatataaaattgttgcctttg 5655014  T

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Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 5655485 - 5655343
Alignment:
Q  7 ggtatgaaggagtttatttggatggtttgaggatttgaaaatatttagagagtttcagannnnnnnnatt--atgaaaaaagcgagtttggttttaccta 104  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||         ||  ||||||||||||||||||||||||||||    
T  5655485 ggtatgaaggagtttatttggatggtttgaggatttgaaaacatttagagagtttcagattttttttttttaatgaaaaaagcgagtttggttttaccta 5655386  T
Q  105 cggatttgatccgtagtgatagagctgaatcagaacttacgaa 147  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  5655385 cggatttgatccgtagtgatagagctgaatcagaacttacgaa 5655343  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 299
Target Start/End: Complemental strand, 43606770 - 43606680
Alignment:
Q  209 aaattgaaataaggggaccaaaaaactgaattttgaaataggggtacc-aaacttcagaaaaatgaaaataggggcaaccaaagtgcattta 299  Q
    |||||||||||||||| |||||||  |||||||  ||||||| ||| | ||||||||||| |||||||||||||| | | ||||||||||||    
T  43606770 aaattgaaataagggg-ccaaaaagttgaatttaaaaataggtgtaacgaaacttcagaagaatgaaaataggggtatcaaaagtgcattta 43606680  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 295
Target Start/End: Complemental strand, 40704924 - 40704818
Alignment:
Q  188 tggggaatcaacagttagaaaaaattgaaataaggggaccaaaaaactgaattttgaaataggggtacc-aaacttcagaaaaatgaaaataggggcaac 286  Q
    ||||| ||||| ||||||||||| | |||||| |||||  ||||| ||||||||| ||||||||||||| |||||||| | |||| ||||| |||||| |    
T  40704924 tgggggatcaaaagttagaaaaact-gaaatagggggatgaaaaa-ctgaattttaaaataggggtaccaaaacttcaaataaataaaaatgggggcacc 40704827  T
Q  287 caaagtgca 295  Q
     ||||||||    
T  40704826 aaaagtgca 40704818  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 10901057 - 10901121
Alignment:
Q  194 atcaacagttagaaaaaattgaaataaggggaccaaaaaactgaattttgaaataggggtaccaaa 259  Q
    ||||| ||||||||||||||||||| ||||| |||| |||||||||||  ||||| ||||| ||||    
T  10901057 atcaaaagttagaaaaaattgaaat-agggggccaagaaactgaatttaaaaatatgggtatcaaa 10901121  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 249
Target Start/End: Original strand, 40137561 - 40137664
Alignment:
Q  145 gaaaattttctgttactaaaagtcatgtcttttgtagtggggttggggaatcaacagttagaaaaaattgaaataaggggaccaaaaaactgaattttga 244  Q
    |||||||| |||| ||||||| ||| || |||||||  ||||  || ||||||| |||||||||||||| ||||||  ||| |||||| | ||||||| |    
T  40137561 gaaaatttactgtcactaaaattcaagttttttgtaacggggc-ggtgaatcaaaagttagaaaaaattaaaataaatggatcaaaaagcagaattttaa 40137659  T
Q  245 aatag 249  Q
    |||||    
T  40137660 aatag 40137664  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 33094665 - 33094710
Alignment:
Q  204 agaaaaaattgaaataaggggaccaaaaaactgaattttgaaatag 249  Q
    ||||||||||||| |||| |||||||| ||||||||||| ||||||    
T  33094665 agaaaaaattgaattaagtggaccaaagaactgaattttaaaatag 33094710  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 282
Target Start/End: Original strand, 2897332 - 2897392
Alignment:
Q  222 gggaccaaaaaactgaattttgaaataggggtaccaaacttcagaaaaatgaaaatagggg 282  Q
    |||||||||||||| |||||  ||||||||| || |||||||| |||||| ||| ||||||    
T  2897332 gggaccaaaaaactaaatttcaaaataggggaacaaaacttcataaaaataaaagtagggg 2897392  T

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