View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4142_high_16 (Length: 319)

Name: NF4142_high_16
Description: NF4142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4142_high_16
NF4142_high_16
[»] chr1 (2 HSPs)
chr1 (19-141)||(7742956-7743078)
chr1 (134-253)||(7742611-7742727)
[»] chr3 (1 HSPs)
chr3 (19-249)||(40864400-40864618)


Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 7743078 - 7742956
Alignment:
Q  19 ctttgggtctctaacagatggcaaaagtgattgttgttctacatctgtagtttcttcatcatattcttcagccaaccgctgctttccatatctctcatgt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7743078 ctttgggtctctaacagatggcaaaagtgattgttgttctacatctgtagtttcttcatcatattcttcagccaaccgctgctttccatatctctcatgt 7742979  T
Q  119 atccttctttccatctcttcaag 141  Q
    |||||||||||||||||||||||    
T  7742978 atccttctttccatctcttcaag 7742956  T

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Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 134 - 253
Target Start/End: Complemental strand, 7742727 - 7742611
Alignment:
Q  134 tcttcaaggtcttcatgatcttcttggtgtggtggctggtgatggtgatgtgctctccctctattagtattatcatcttcgtcttgcacatcaggaccga 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||   |||||    
T  7742727 tcttcaaggtcttcatgatcttcttggtgtggtggctggtgatggtgatgcgctctccctctattagtattatcatcttcgtcttgcacatc---accga 7742631  T
Q  234 taatgaagcctgcatgcatg 253  Q
    ||||||||||||||||||||    
T  7742630 taatgaagcctgcatgcatg 7742611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 40864618 - 40864400
Alignment:
Q  19 ctttgggtctctaacagatggcaaaagtgattgttgttctacatctgtagtttcttcatcatattcttcagccaaccgctgctttccatatctctcatgt 118  Q
    |||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||| ||||||   |||||||||||||||||||||||||| |||    
T  40864618 ctttgggtctctcacagatggcaaaagtgcttgctgttctacatctgtagtttcttcatcgtattct---gccaaccgctgctttccatatctctcttgt 40864522  T
Q  119 atccttctttccatctcttcaaggtcttcatgatcttcttggtgtggtggctggtgatggtgatgtgctctccctctattagtattatcatcttcgtctt 218  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||   ||   |||| |||  || ||||      ||||||||||||||||||    
T  40864521 atccttcttgccatctcttcaaggtcttcatgatcttcttggtggggtggc---tgtctgtgacgtggccttcctc------tattatcatcttcgtctt 40864431  T
Q  219 gcacatcaggaccgataatgaagcctgcatg 249  Q
    |||||||||| || | |||||||||||||||    
T  40864430 gcacatcaggcccaacaatgaagcctgcatg 40864400  T

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