View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4142_high_18 (Length: 303)
Name: NF4142_high_18
Description: NF4142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4142_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 42980268 - 42979978
Alignment:
| Q |
1 |
cttttgaagaattattagcacaagagaagaaggattcgttttggttagttttataccctttgttttttataaagcttgtaaatgtatggaagcctcatct |
100 |
Q |
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| T |
42980268 |
cttttgaagaattattagcacaagagaagaaggattcgttttggttagttttataccctttgttttttataaagcttgtaaatgtatggaagcctcatct |
42980169 |
T |
|
| Q |
101 |
tccctattttggttttggaggggaagggttgatttgtaattcaccaataaccacttttctgtatttgtacaggcnnnnnnntggcaaatcaagagtgtgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
42980168 |
tccctattttggttttggaggggaagggttgatttgtaattcaccaataaccacttttctgtatttgtacaggcaaaaaaatggaaaatcaagagtgtgc |
42980069 |
T |
|
| Q |
201 |
tcaagctaatttataagagtactactaactgttagtttagtgtgtacatctaatatatctatagtgtactgtcacaggaatgttctttttg |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42980068 |
tcaagctaatttataagagtactactaactgttagtttagtgtgtacatctaatatatctatagtgtactgtcacatgaatgttctttttg |
42979978 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 5467151 - 5467200
Alignment:
| Q |
1 |
cttttgaagaattattagcacaagagaagaaggattcgttttggttagtt |
50 |
Q |
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||||||||||||||||| ||||||| ||||||||||| ||||||| |||| |
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| T |
5467151 |
cttttgaagaattattaacacaagaaaagaaggattcattttggtaagtt |
5467200 |
T |
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