View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4142_high_2 (Length: 583)
Name: NF4142_high_2
Description: NF4142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4142_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 472; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 1 - 567
Target Start/End: Original strand, 29317421 - 29317989
Alignment:
| Q |
1 |
acacattttacatatcttctacttactaagataacggataatttccaattttattagaccactttgagagaatgtttaactaagctaatcatttaggaaa |
100 |
Q |
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| T |
29317421 |
acacattttacatatcttctacttactaagataacggataatttccaattttattagaccactttgagagaatgtttaactaagctaatcatttaggaaa |
29317520 |
T |
|
| Q |
101 |
aagtttgatggtacaacaacactacgtaccgatgaaaaacaacgaacagataggaacaatatgaagtgcannnnnnnnnnnnnnc--gaaaaaatcatgt |
198 |
Q |
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| T |
29317521 |
aagtttgatggtacaacaacactacgtaccgatgaaaaacaacgaacagataggaacaatatgaagtgcatttttaattttatttttgaaaaaatcatgt |
29317620 |
T |
|
| Q |
199 |
gcattagtttgcaatttattttgatttttatgtatttataaaatataatatcactaccctatttttagggtgccagtagtgcctatttatatgtatttta |
298 |
Q |
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| T |
29317621 |
gcattagtttgcaatttattttgatttttatgtatttaaaaaatataataccactaccctatttttagggtgccagtagtgcctatttttatgtatttta |
29317720 |
T |
|
| Q |
299 |
gggtaaaataatagatttttattgaattttagtgatgggtttgcaatttggcggttaccacgagttcaagaaggatatcaaaagttttgtcttaaagtag |
398 |
Q |
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| T |
29317721 |
gggtaaaataatagatttttattgaattttagtgatgggtttgcaatttggcggttaccacgagttcaagaaggatatcaaaagttttgtcttaaagtgg |
29317820 |
T |
|
| Q |
399 |
tctagttagctgatatatggtgtatttggaaggagcgtaatattcgtattttcaacaacaaataattatagttagactagttactagatcgtattcaaca |
498 |
Q |
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| T |
29317821 |
tctagttagctgatatatgatgtatttggaaggagcgtaatactcgtattttcaacaacaaagaattatcgttagactagttactagatcgtattcaaca |
29317920 |
T |
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| Q |
499 |
ttattcttgatggtggttggagtcgcacattcctaacttttttacgacttcaactcatggtggtctaat |
567 |
Q |
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| T |
29317921 |
ttattcttggtggtggttggagacgcacattcctaacttttttacgacttcaactcatggtggtctaat |
29317989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 551
Target Start/End: Complemental strand, 24481036 - 24480901
Alignment:
| Q |
416 |
tggtgtatttggaaggagcgtaatattcgtattttcaacaacaaataattatagttagactagttactagatcgtattcaacattattcttgatggtggt |
515 |
Q |
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| T |
24481036 |
tggtgtatttgttaggtgcataatgctcgtattttaaacaacaaa-aattatgattagaccacttactagatcatattaagctttattcttagtggtgtt |
24480938 |
T |
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| Q |
516 |
tggagtcgcacattcctaac-ttttttacgacttcaa |
551 |
Q |
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| T |
24480937 |
taaagttgcacattcctaacattttttacgacttcaa |
24480901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 567
Target Start/End: Original strand, 14750416 - 14750565
Alignment:
| Q |
416 |
tggtgtatttggaaggagcgtaatattcgtattttcaacaacaaataattatagttagactagttactagatcgtattcaacattattcttgatggtggt |
515 |
Q |
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||||||||||| |||||||||||| |||||| |||| |||||| |||||| ||||||| | ||||||||||| | | | | ||| |||||||||| |
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| T |
14750416 |
tggtgtatttgtaaggagcgtaatgctcgtatcttcagcaacaatgaattatcgttagaccaattactagatcgcactaagtttcatttctgatggtggt |
14750515 |
T |
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| Q |
516 |
tggagtcgcacattcctaactttt-ttacgacttcaactcatggtggtctaat |
567 |
Q |
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| T |
14750516 |
t---gtcgcaatttcctaacttttattacgacttcaatccatggtggtttaat |
14750565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 5002275 - 5002219
Alignment:
| Q |
200 |
cattagtttgcaatttattttgatttttatgtatttataaaatataatatcactacc |
256 |
Q |
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|||||| ||| |||||||||||| ||| ||||||| ||||||||||||||||||| |
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| T |
5002275 |
cattagattgtaatttattttgactttcatgtattctgaaaatataatatcactacc |
5002219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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