View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4142_high_23 (Length: 277)
Name: NF4142_high_23
Description: NF4142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4142_high_23 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 37541209 - 37540954
Alignment:
| Q |
19 |
aaagtaacccttcaaagcggtaatatatctctttggtgtatatgtaaaagttgattttgtaatattgattctgatcaaaagttatgtttttaatcttgaa |
118 |
Q |
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| T |
37541209 |
aaagtaacccttcaaagcggtaatatatctctttcgtgtatatgtaaaagttgattttgtaatattgactatgatcaaaagttatgtttttaatcttgaa |
37541110 |
T |
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| Q |
119 |
cgataaatttgaggctaaaaaacatttgtagaagctaaaactttaaattcttgcttcgagttagaattaattatggtggtaaaattaattcaaacacttc |
218 |
Q |
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| T |
37541109 |
cgataaatttgaggctaaaaaacatttgtagaagctaaaactttaaattctagcttcgagttagaattaattatggtggtaaaattaattcaaacacttc |
37541010 |
T |
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| Q |
219 |
ttgaatcaactttgc----atactccaaaagtggaaccaaacatacactctctgtg |
270 |
Q |
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| T |
37541009 |
ttgaatcaactttgcatatatactccagaagtggaaccaaacatacactctctgtg |
37540954 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 1227699 - 1227759
Alignment:
| Q |
121 |
ataaatttgaggctaaaaaacatttgtagaagctaaaactttaaattcttgcttcgagtta |
181 |
Q |
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| T |
1227699 |
ataaatttgatgctaaaaatcaattgtagaagcaaaaactttaaattttgtcttcgagtta |
1227759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 3845255 - 3845305
Alignment:
| Q |
212 |
acacttcttgaatcaactttgcatactccaaaagtggaaccaaacatacac |
262 |
Q |
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| T |
3845255 |
acacctctagaatcaattttggttactccaaaagtggaaccaaacatacac |
3845305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 10400839 - 10400890
Alignment:
| Q |
212 |
acacttcttgaatcaactttgcatactccaaaagtggaaccaaacatacact |
263 |
Q |
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| T |
10400839 |
acacctctagaatcaattttgcatcctccaagagtggaaccaaacatacact |
10400890 |
T |
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Target: scaffold0036 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 192
Target Start/End: Original strand, 962 - 1037
Alignment:
| Q |
114 |
ttgaacgataaatttgaggctaaaaaacatttgtagaagctaaaactttaaattcttgcttcgagttagaattaattat |
192 |
Q |
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| T |
962 |
ttgaacaataaattagaggctaaaaaa---ttgtagaggtaaaaacttcaaattctagcttctagttagaatcaattat |
1037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 226
Target Start/End: Complemental strand, 5268276 - 5268181
Alignment:
| Q |
130 |
aggctaaaaaacatttgtagaagctaaaactttaaattcttgcttcgagttagaattaattatggtggtaaaattaattcaaacacttcttgaatca |
226 |
Q |
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| T |
5268276 |
aggctaagaaccaattgtagaagcccaaagtacaaattctagcttcgagttagaatcaattttggaggcaaaattaattc-tacacttctagaatca |
5268181 |
T |
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