View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4142_high_28 (Length: 262)
Name: NF4142_high_28
Description: NF4142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4142_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 2215078 - 2215314
Alignment:
| Q |
18 |
atcttggtccaccagcagttagtctaagtaatagcggaatgtgtggaaagaaataagttaacataattgttagttgttacgcaattcaagtaagaaaaat |
117 |
Q |
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| T |
2215078 |
atcttggtccaccggcagttagtctaagtaatagcggaatgtgtggaaagaaataagttaacataattgttagttgttacgcaattcaagtaagaaaaat |
2215177 |
T |
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| Q |
118 |
aaggatgatatcaggtcaatggaaactaatgtattgtttgaatagttgacttgggtcaatttttgtagatacatatgcattagaagttatttttctaaac |
217 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2215178 |
aaggatgatatcaggtcaatggaaactaatgcattgtttgaatagttgacttgggtcaatttttgtagatacatatgcattagaagttatttttctaaac |
2215277 |
T |
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| Q |
218 |
ctcattacaagtatggctagcagaaattaatgtctct |
254 |
Q |
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| T |
2215278 |
ctcattacaagtatggctagcagaaattaatgtctct |
2215314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 32 - 254
Target Start/End: Original strand, 2202502 - 2202717
Alignment:
| Q |
32 |
gcagttagtctaagtaatagcggaatgtgtggaaagaaataagttaacataattgttagttgttacgcaattcaagtaagaaaaataaggatgatatcag |
131 |
Q |
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|||||||| ||||||| ||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
2202502 |
gcagttagcctaagtactagtggaatgtgtggaaagaaataagttaacatacttgttat-------gcaattcaagtaagaaaaataaggatgatatcag |
2202594 |
T |
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| Q |
132 |
gtcaatggaaactaatgtattgtttgaatagttgacttgggtcaatttttgtagatacatatgcattagaagttatttttctaaacctcattacaagtat |
231 |
Q |
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||||||||||||| ||| |||| ||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2202595 |
gtcaatggaaacttatgcattgattggttagttgacttgggtcaatttttatagatacatatgcattaaaagttatttttctaaacctcattacaagtat |
2202694 |
T |
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| Q |
232 |
ggctagcagaaattaatgtctct |
254 |
Q |
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|||| |||||||||||||||||| |
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| T |
2202695 |
ggcttgcagaaattaatgtctct |
2202717 |
T |
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