View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4142_high_33 (Length: 249)
Name: NF4142_high_33
Description: NF4142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4142_high_33 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 58 - 249
Target Start/End: Original strand, 17108724 - 17108919
Alignment:
| Q |
58 |
acacaatagtcaaagactacatccactcatggacatcagtgagatttatccaattatttcatcaaataggaaaagtattccataaatgctcaaaaaccat |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||| | |
|
|
| T |
17108724 |
acacaatagtcaaagactacatccactcatggacatcggtgagatttatccaattatttaatcaaataggaaatgtatttcataaatgctcaaaaacatt |
17108823 |
T |
|
| Q |
158 |
ctctcacccaccctatttcactaacaatttaaagagaaaaatgta----atatttcnnnnnnnaataaagaaaaatgtattctttaaccaagcttc |
249 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
17108824 |
ctctcacccaccctatttcactaacaagttaaagagaaaaatgtattttttttttgttttttgaataaagaaaaatgtattctttaaccaagcttc |
17108919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 40
Target Start/End: Original strand, 17108700 - 17108730
Alignment:
| Q |
10 |
gcagagataagggaggagaatattacacaat |
40 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
17108700 |
gcagagataagggaggagaatattacacaat |
17108730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University