View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4142_high_34 (Length: 248)
Name: NF4142_high_34
Description: NF4142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4142_high_34 |
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| [»] chr7 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 4826012 - 4826259
Alignment:
| Q |
7 |
tcttgttgccttcacaaatggctactcacctag----gtgtgaactggtttttgaggggcagcaggggttctgtttggttccctgattttctgagctctt |
102 |
Q |
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| T |
4826012 |
tcttgttgccttcacaaatggctactcacctagtgaggtgtaaactggtttttgaggggcagcaggggttctgtttggttccctgattttctgagctctt |
4826111 |
T |
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| Q |
103 |
acttagtactcttgtcatgttacaacacaaaccaatgtgattttggtacaagtcaggaaaatggttatgtagttttgtaaacacaaagtcagagacaggg |
202 |
Q |
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| T |
4826112 |
acttagtactcttgtcatgttacaacacaaaccaatgtgattttggtacaagtcaggaaaatggttatgtagttttgtaaacacaaagtcagagacaggg |
4826211 |
T |
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| Q |
203 |
ctcatcaagatga--agaagcccaaatgaatccattctgttaacatca |
248 |
Q |
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| T |
4826212 |
ctcatcaagatgaatagaagcccaaatgaatccattctgttaacatca |
4826259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 7708703 - 7708614
Alignment:
| Q |
7 |
tcttgttgccttcacaaatggctactcacctag----gtgtgaactggtttttgaggggcagcaggggttctgtttggttccctgatttt |
92 |
Q |
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| T |
7708703 |
tcttgttgccttcacaaatggcttctcacctagtgaggtgtgaactggtttttgaggggcagcaggggttctgtttggttccctgatttt |
7708614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 22013601 - 22013524
Alignment:
| Q |
13 |
tgccttcacaaatggctactcacctag----gtgtgaactggtttttgaggggcagcaggggttctgtttggttccct |
86 |
Q |
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| T |
22013601 |
tgccttcacaaatagctacacacctagtgaggtgcgaactggtttttgaggggcatcaggggttctatttggttccct |
22013524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 98 - 248
Target Start/End: Original strand, 38727695 - 38727847
Alignment:
| Q |
98 |
ctcttacttagtactcttgtcatgttacaacacaaaccaatgtgattttggtacaagtcaggaaaatggttatgtagttttgtaaacacaaagtcagaga |
197 |
Q |
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| T |
38727695 |
ctcttacttagtactcttgtgatgttacaacaaaaaccaatgtgattttggtacaagtcaggaaaatggttatgtagttttgtacacacaaagtcagaga |
38727794 |
T |
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| Q |
198 |
cagggctcatcaagatga--agaagcccaaatgaatccattctgttaacatca |
248 |
Q |
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| T |
38727795 |
cagggctcatcaagatgaatagaagcccaaatgaatccattctgttaacatca |
38727847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 33879480 - 33879551
Alignment:
| Q |
9 |
ttgttgccttcacaaatggctactcacctag----gtgtgaactggtttttgaggggcagcaggggttctgt |
76 |
Q |
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| T |
33879480 |
ttgttgccttcacaaatggctactcacttagtgaggtgtgaactggtttttgaggggccgtaggggttctgt |
33879551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 33880277 - 33880354
Alignment:
| Q |
13 |
tgccttcacaaatggctactcacctag----gtgtgaactggtttttgaggggcagcaggggttctgtttggttccct |
86 |
Q |
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| T |
33880277 |
tgccttcacaaatagctactcacctagtgaggtgcgaactggtttttgatgggcatcaggggttctatttggttccct |
33880354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 14910 - 14833
Alignment:
| Q |
13 |
tgccttcacaaatggctactcacctag----gtgtgaactggtttttgaggggcagcaggggttctgtttggttccct |
86 |
Q |
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| T |
14910 |
tgccttcacaaatagctacacacctagtgaggtgcgaactggtttttgaggggcatcaggggttctatttggttccct |
14833 |
T |
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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 16241839 - 16241762
Alignment:
| Q |
13 |
tgccttcacaaatggctactcacctag----gtgtgaactggtttttgaggggcagcaggggttctgtttggttccct |
86 |
Q |
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| T |
16241839 |
tgccttcacaaatagctacacacctagtgaggtgcgaactggtttttgaggggcatcaggggttctatttggttccct |
16241762 |
T |
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